Wall clock time and date at job start Mon Mar 30 2020 04:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47340 * 2 1 4 4 H 1.09005 * 109.47260 * 305.92822 * 3 2 1 5 5 N 1.46907 * 109.47085 * 65.92928 * 3 2 1 6 6 C 1.46907 * 110.99628 * 264.74190 * 5 3 2 7 7 C 1.53002 * 109.46983 * 272.65188 * 6 5 3 8 8 C 1.50698 * 115.55272 * 39.61120 * 7 6 5 9 9 H 1.07993 * 120.00282 * 274.14601 * 8 7 6 10 10 C 1.37878 * 119.99530 * 94.14200 * 8 7 6 11 11 N 1.31513 * 120.00027 * 3.88584 * 10 8 7 12 12 Si 1.86800 * 119.99580 * 183.88372 * 10 8 7 13 13 H 1.48502 * 109.46885 * 90.00714 * 12 10 8 14 14 H 1.48502 * 109.46826 * 209.99889 * 12 10 8 15 15 H 1.48497 * 109.47547 * 330.00201 * 12 10 8 16 16 C 1.53008 * 117.49446 * 253.90564 * 7 6 5 17 17 C 1.53000 * 117.49467 * 185.28844 * 7 6 5 18 18 C 1.52995 * 109.47118 * 185.92458 * 3 2 1 19 19 H 1.09000 * 109.47510 * 184.99837 * 18 3 2 20 20 O 1.42897 * 109.47289 * 305.00372 * 18 3 2 21 21 C 1.53001 * 109.46952 * 65.00480 * 18 3 2 22 22 C 1.53004 * 109.47136 * 175.00108 * 21 18 3 23 23 H 1.09006 * 109.47175 * 294.01504 * 1 2 3 24 24 H 1.08999 * 109.47466 * 174.01027 * 1 2 3 25 25 H 1.09004 * 109.47156 * 54.00741 * 1 2 3 26 26 H 1.09003 * 109.46785 * 120.00234 * 2 1 3 27 27 H 1.08997 * 109.46904 * 240.00011 * 2 1 3 28 28 H 1.00899 * 111.00101 * 140.78775 * 5 3 2 29 29 H 1.08997 * 109.47100 * 32.65303 * 6 5 3 30 30 H 1.08997 * 109.46846 * 152.64916 * 6 5 3 31 31 H 0.97003 * 119.99706 * 184.99693 * 11 10 8 32 32 H 1.08998 * 117.50024 * 0.02562 * 16 7 6 33 33 H 1.09000 * 117.49650 * 145.02375 * 16 7 6 34 34 H 1.09002 * 117.49206 * 214.97700 * 17 7 6 35 35 H 1.08994 * 117.50076 * 359.96944 * 17 7 6 36 36 H 0.96694 * 114.00370 * 60.00216 * 20 18 3 37 37 H 1.09004 * 109.47160 * 294.99569 * 21 18 3 38 38 H 1.08994 * 109.47491 * 55.00102 * 21 18 3 39 39 H 1.09000 * 109.46968 * 299.99385 * 22 21 18 40 40 H 1.09004 * 109.47053 * 59.99674 * 22 21 18 41 41 H 1.09002 * 109.46960 * 179.97438 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5927 1.9860 -0.8322 5 7 1.6707 2.0924 1.2646 6 6 0.4183 2.8470 1.1224 7 6 0.7283 4.2608 0.6262 8 6 1.8111 4.3606 -0.4171 9 1 2.8464 4.4252 -0.1165 10 6 1.4801 4.3694 -1.7555 11 7 0.2165 4.3679 -2.1204 12 14 2.8263 4.3837 -3.0505 13 1 3.1876 2.9874 -3.4041 14 1 2.3399 5.0911 -4.2622 15 1 4.0212 5.0838 -2.5147 16 6 0.6110 5.4051 1.6351 17 6 -0.4371 5.2476 0.5317 18 6 3.5628 1.4449 -0.1489 19 1 3.9349 2.4656 -0.0600 20 8 4.1429 0.6354 0.8758 21 6 3.9420 0.8816 -1.5199 22 6 5.4545 0.9990 -1.7190 23 1 -0.3634 0.4183 0.9388 24 1 -0.3634 -1.0220 -0.1072 25 1 -0.3634 0.6040 -0.8315 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 2.4154 2.6868 1.5967 29 1 -0.2295 2.3439 0.4047 30 1 -0.0838 2.9029 2.0882 31 1 -0.0170 4.3009 -3.0595 32 1 0.3134 5.1507 2.6524 33 1 1.3172 6.2304 1.5444 34 1 -0.4204 5.9693 -0.2850 35 1 -1.4246 4.8895 0.8225 36 1 3.8560 -0.2878 0.8574 37 1 3.6486 -0.1667 -1.5758 38 1 3.4283 1.4448 -2.2990 39 1 5.7480 2.0473 -1.6631 40 1 5.9683 0.4358 -0.9399 41 1 5.7247 0.5973 -2.6955 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313199205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:08 Heat of formation + Delta-G solvation = -45.872438 kcal Electronic energy + Delta-G solvation = -19304.202316 eV Core-core repulsion = 16605.106313 eV Total energy + Delta-G solvation = -2699.096004 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.62917 -36.69760 -34.25824 -32.36354 -31.97054 -31.08160 -27.74914 -25.63825 -24.20511 -22.89170 -21.36871 -20.94231 -19.48015 -19.10531 -16.27955 -15.93726 -15.39003 -14.89530 -14.71885 -14.38686 -13.84436 -13.35996 -12.96871 -12.65704 -12.51873 -12.18107 -11.91287 -11.80910 -11.56565 -11.32628 -11.24028 -11.14722 -10.92312 -10.66114 -10.43890 -10.31462 -10.18238 -9.98799 -9.78168 -9.52459 -9.16326 -8.97333 -8.41889 -8.03643 -7.21919 -6.09639 -4.16207 3.16350 3.27773 3.30307 4.30043 4.82872 5.12620 5.17383 5.32076 5.41518 5.44978 5.52194 5.67400 5.77376 5.88874 6.08574 6.12834 6.18320 6.23892 6.30926 6.38876 6.42992 6.45619 6.56054 6.59823 6.64121 6.68739 6.76323 6.84209 6.87269 7.00964 7.12179 7.22401 7.51178 7.70889 7.76988 8.06494 8.19488 8.38390 8.53036 8.84817 9.46856 10.96384 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017224 B = 0.012491 C = 0.009200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.235271 B = 2241.034873 C = 3042.601064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C 0.059 3.941 4 H 0.090 0.910 5 N -0.664 5.664 6 C 0.091 3.909 7 C 0.003 3.997 8 C -0.488 4.488 9 H 0.055 0.945 10 C 0.076 3.924 11 N -0.873 5.873 12 Si 0.866 3.134 13 H -0.268 1.268 14 H -0.288 1.288 15 H -0.273 1.273 16 C -0.216 4.216 17 C -0.145 4.145 18 C 0.106 3.894 19 H 0.102 0.898 20 O -0.560 6.560 21 C -0.163 4.163 22 C -0.146 4.146 23 H 0.061 0.939 24 H 0.037 0.963 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.339 0.661 29 H 0.065 0.935 30 H 0.040 0.960 31 H 0.259 0.741 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.057 0.943 36 H 0.364 0.636 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.051 0.949 40 H 0.057 0.943 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.338 -7.445 1.469 8.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.155 4.155 3 C -0.051 4.051 4 H 0.108 0.892 5 N -0.293 5.293 6 C -0.038 4.038 7 C 0.001 3.999 8 C -0.526 4.526 9 H 0.073 0.927 10 C -0.127 4.127 11 N -0.510 5.510 12 Si 0.694 3.306 13 H -0.194 1.194 14 H -0.214 1.214 15 H -0.198 1.198 16 C -0.254 4.254 17 C -0.183 4.183 18 C 0.047 3.953 19 H 0.119 0.881 20 O -0.365 6.365 21 C -0.201 4.201 22 C -0.203 4.203 23 H 0.081 0.919 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.156 0.844 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.210 0.790 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.188 -7.377 1.712 8.216 hybrid contribution 0.569 0.470 -1.650 1.807 sum 3.757 -6.907 0.063 7.863 Atomic orbital electron populations 1.21746 0.96112 0.99833 1.02477 1.21608 0.96432 0.97339 1.00073 1.22209 0.93843 0.94280 0.94789 0.89227 1.60803 1.06482 1.34944 1.27039 1.21770 0.91502 0.92962 0.97593 1.19759 0.97097 0.87907 0.95097 1.20324 0.91620 1.51134 0.89501 0.92657 1.24892 0.94896 0.94745 0.98158 1.70027 1.15714 1.48857 1.16405 0.87052 0.82826 0.78727 0.82020 1.19386 1.21373 1.19767 1.23064 1.04591 1.04268 0.93450 1.22384 0.92099 1.05139 0.98679 1.22221 0.92711 0.94909 0.85469 0.88067 1.86534 1.71374 1.23996 1.54567 1.22395 0.96883 1.01491 0.99354 1.21687 0.96195 1.01751 1.00683 0.91948 0.94359 0.92833 0.92271 0.93082 0.84364 0.91615 0.94141 0.93095 0.92037 0.90995 0.89498 0.92471 0.78963 0.91976 0.90511 0.92997 0.92361 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.51 37.16 0.32 -2.03 16 2 C -0.12 -1.85 4.88 -26.73 -0.13 -1.98 16 3 C 0.06 1.10 1.09 -67.71 -0.07 1.03 16 4 H 0.09 2.00 5.60 -51.93 -0.29 1.71 16 5 N -0.66 -12.97 6.12 -106.72 -0.65 -13.62 16 6 C 0.09 1.94 5.18 -3.82 -0.02 1.92 16 7 C 0.00 0.07 1.78 -155.66 -0.28 -0.21 16 8 C -0.49 -12.18 6.15 -34.44 -0.21 -12.39 16 9 H 0.06 1.41 7.24 -52.49 -0.38 1.03 16 10 C 0.08 1.95 4.55 -17.82 -0.08 1.87 16 11 N -0.87 -23.35 11.88 55.43 0.66 -22.70 16 12 Si 0.87 19.79 29.25 -169.99 -4.97 14.81 16 13 H -0.27 -5.79 5.41 56.52 0.31 -5.48 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 16 C -0.22 -4.77 9.88 -26.73 -0.26 -5.03 16 17 C -0.14 -3.42 8.87 -26.73 -0.24 -3.66 16 18 C 0.11 1.85 2.57 -26.73 -0.07 1.78 16 19 H 0.10 2.01 7.38 -51.93 -0.38 1.62 16 20 O -0.56 -9.07 12.73 -35.23 -0.45 -9.52 16 21 C -0.16 -2.63 5.25 -26.73 -0.14 -2.77 16 22 C -0.15 -2.14 9.81 37.16 0.36 -1.78 16 23 H 0.06 1.06 6.75 -51.93 -0.35 0.71 16 24 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.96 7.80 -51.93 -0.40 0.56 16 26 H 0.06 0.88 7.05 -51.93 -0.37 0.51 16 27 H 0.05 0.75 6.41 -51.93 -0.33 0.42 16 28 H 0.34 6.98 7.59 -39.29 -0.30 6.69 16 29 H 0.07 1.47 5.54 -51.93 -0.29 1.18 16 30 H 0.04 0.83 7.94 -51.93 -0.41 0.42 16 31 H 0.26 6.73 8.32 -40.82 -0.34 6.39 16 32 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 33 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 34 H 0.09 2.25 7.61 -51.93 -0.40 1.86 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.36 4.82 7.34 45.56 0.33 5.16 16 37 H 0.06 0.88 6.68 -51.93 -0.35 0.53 16 38 H 0.08 1.41 6.09 -51.93 -0.32 1.09 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.80 7.82 -51.93 -0.41 0.39 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 310.08 15.07 4.67 4.67 Total: -1.00 -25.57 310.08 -7.97 -33.54 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -6.40 Total: 16.06 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: -0.82 Total: -23.25 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.00 Total: -36.32 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.45 Total: -9.52 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.97 Total: 14.81 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -25.57 -7.97 -33.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313199205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.332 kcal (2) G-P(sol) polarization free energy of solvation -25.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds