Wall clock time and date at job start Mon Mar 30 2020 04:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47340 * 2 1 4 4 H 1.09005 * 109.47260 * 305.92822 * 3 2 1 5 5 N 1.46907 * 109.47085 * 65.92928 * 3 2 1 6 6 C 1.46907 * 110.99628 * 264.74190 * 5 3 2 7 7 C 1.53002 * 109.46983 * 272.65188 * 6 5 3 8 8 C 1.50698 * 115.55272 * 39.61120 * 7 6 5 9 9 H 1.07993 * 120.00282 * 274.14601 * 8 7 6 10 10 C 1.37878 * 119.99530 * 94.14200 * 8 7 6 11 11 N 1.31513 * 120.00027 * 3.88584 * 10 8 7 12 12 Si 1.86800 * 119.99580 * 183.88372 * 10 8 7 13 13 H 1.48502 * 109.46885 * 90.00714 * 12 10 8 14 14 H 1.48502 * 109.46826 * 209.99889 * 12 10 8 15 15 H 1.48497 * 109.47547 * 330.00201 * 12 10 8 16 16 C 1.53008 * 117.49446 * 253.90564 * 7 6 5 17 17 C 1.53000 * 117.49467 * 185.28844 * 7 6 5 18 18 C 1.52995 * 109.47118 * 185.92458 * 3 2 1 19 19 H 1.09000 * 109.47510 * 184.99837 * 18 3 2 20 20 O 1.42897 * 109.47289 * 305.00372 * 18 3 2 21 21 C 1.53001 * 109.46952 * 65.00480 * 18 3 2 22 22 C 1.53004 * 109.47136 * 175.00108 * 21 18 3 23 23 H 1.09006 * 109.47175 * 294.01504 * 1 2 3 24 24 H 1.08999 * 109.47466 * 174.01027 * 1 2 3 25 25 H 1.09004 * 109.47156 * 54.00741 * 1 2 3 26 26 H 1.09003 * 109.46785 * 120.00234 * 2 1 3 27 27 H 1.08997 * 109.46904 * 240.00011 * 2 1 3 28 28 H 1.00899 * 111.00101 * 140.78775 * 5 3 2 29 29 H 1.08997 * 109.47100 * 32.65303 * 6 5 3 30 30 H 1.08997 * 109.46846 * 152.64916 * 6 5 3 31 31 H 0.97003 * 119.99706 * 184.99693 * 11 10 8 32 32 H 1.08998 * 117.50024 * 0.02562 * 16 7 6 33 33 H 1.09000 * 117.49650 * 145.02375 * 16 7 6 34 34 H 1.09002 * 117.49206 * 214.97700 * 17 7 6 35 35 H 1.08994 * 117.50076 * 359.96944 * 17 7 6 36 36 H 0.96694 * 114.00370 * 60.00216 * 20 18 3 37 37 H 1.09004 * 109.47160 * 294.99569 * 21 18 3 38 38 H 1.08994 * 109.47491 * 55.00102 * 21 18 3 39 39 H 1.09000 * 109.46968 * 299.99385 * 22 21 18 40 40 H 1.09004 * 109.47053 * 59.99674 * 22 21 18 41 41 H 1.09002 * 109.46960 * 179.97438 * 22 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5927 1.9860 -0.8322 5 7 1.6707 2.0924 1.2646 6 6 0.4183 2.8470 1.1224 7 6 0.7283 4.2608 0.6262 8 6 1.8111 4.3606 -0.4171 9 1 2.8464 4.4252 -0.1165 10 6 1.4801 4.3694 -1.7555 11 7 0.2165 4.3679 -2.1204 12 14 2.8263 4.3837 -3.0505 13 1 3.1876 2.9874 -3.4041 14 1 2.3399 5.0911 -4.2622 15 1 4.0212 5.0838 -2.5147 16 6 0.6110 5.4051 1.6351 17 6 -0.4371 5.2476 0.5317 18 6 3.5628 1.4449 -0.1489 19 1 3.9349 2.4656 -0.0600 20 8 4.1429 0.6354 0.8758 21 6 3.9420 0.8816 -1.5199 22 6 5.4545 0.9990 -1.7190 23 1 -0.3634 0.4183 0.9388 24 1 -0.3634 -1.0220 -0.1072 25 1 -0.3634 0.6040 -0.8315 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 2.4154 2.6868 1.5967 29 1 -0.2295 2.3439 0.4047 30 1 -0.0838 2.9029 2.0882 31 1 -0.0170 4.3009 -3.0595 32 1 0.3134 5.1507 2.6524 33 1 1.3172 6.2304 1.5444 34 1 -0.4204 5.9693 -0.2850 35 1 -1.4246 4.8895 0.8225 36 1 3.8560 -0.2878 0.8574 37 1 3.6486 -0.1667 -1.5758 38 1 3.4283 1.4448 -2.2990 39 1 5.7480 2.0473 -1.6631 40 1 5.9683 0.4358 -0.9399 41 1 5.7247 0.5973 -2.6955 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313199205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:07 Heat of formation + Delta-G solvation = -62.374993 kcal Electronic energy + Delta-G solvation = -19304.917921 eV Core-core repulsion = 16605.106313 eV Total energy + Delta-G solvation = -2699.811608 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.10451 -38.39354 -35.74518 -34.00605 -33.57139 -32.53238 -29.17470 -27.61020 -25.71806 -24.29752 -22.89109 -22.62884 -21.03726 -20.83884 -17.99822 -17.53261 -16.89445 -16.48238 -16.18439 -15.96281 -15.52263 -14.98422 -14.48453 -14.16277 -14.00028 -13.68507 -13.47019 -13.32397 -13.04443 -12.85424 -12.77093 -12.67334 -12.53246 -12.47087 -12.05192 -11.84733 -11.69038 -11.53013 -11.30758 -11.14199 -10.86967 -10.62953 -10.25816 -9.88384 -8.87257 -8.08440 -6.17687 1.32708 1.38732 1.43562 2.38659 3.18557 3.39737 3.61121 3.83980 3.96867 4.07408 4.21714 4.38442 4.41941 4.47907 4.55429 4.64310 4.77109 4.80831 4.86511 4.88885 4.94365 5.05143 5.06958 5.10356 5.15180 5.21240 5.25680 5.33714 5.35565 5.43726 5.51825 5.63261 5.69621 5.76449 5.82830 6.37206 6.55715 6.80184 6.88819 7.01558 7.47356 8.97340 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017224 B = 0.012491 C = 0.009200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.235271 B = 2241.034873 C = 3042.601064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 C 0.062 3.938 4 H 0.051 0.949 5 N -0.653 5.653 6 C 0.104 3.896 7 C -0.014 4.014 8 C -0.485 4.485 9 H 0.045 0.955 10 C 0.044 3.956 11 N -0.900 5.900 12 Si 0.907 3.093 13 H -0.249 1.249 14 H -0.296 1.296 15 H -0.276 1.276 16 C -0.198 4.198 17 C -0.153 4.153 18 C 0.117 3.883 19 H 0.072 0.928 20 O -0.561 6.561 21 C -0.160 4.160 22 C -0.144 4.144 23 H 0.051 0.949 24 H 0.064 0.936 25 H 0.027 0.973 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.332 0.668 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.256 0.744 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.380 0.620 37 H 0.086 0.914 38 H 0.052 0.948 39 H 0.037 0.963 40 H 0.069 0.931 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.270 -9.280 2.087 10.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 C -0.049 4.049 4 H 0.069 0.931 5 N -0.281 5.281 6 C -0.027 4.027 7 C -0.015 4.015 8 C -0.523 4.523 9 H 0.063 0.937 10 C -0.156 4.156 11 N -0.538 5.538 12 Si 0.734 3.266 13 H -0.173 1.173 14 H -0.223 1.223 15 H -0.201 1.201 16 C -0.235 4.235 17 C -0.191 4.191 18 C 0.057 3.943 19 H 0.090 0.910 20 O -0.369 6.369 21 C -0.198 4.198 22 C -0.201 4.201 23 H 0.070 0.930 24 H 0.083 0.917 25 H 0.046 0.954 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.149 0.851 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.229 0.771 37 H 0.105 0.895 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.088 0.912 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.130 -9.234 2.337 10.382 hybrid contribution 0.282 1.051 -1.798 2.102 sum 4.412 -8.182 0.539 9.312 Atomic orbital electron populations 1.21685 0.96446 1.00825 1.00771 1.21580 0.96059 0.95515 1.01735 1.22171 0.94588 0.95384 0.92739 0.93086 1.60890 1.05607 1.34060 1.27522 1.21603 0.92095 0.91551 0.97406 1.19956 0.96609 0.89378 0.95590 1.20393 0.91503 1.50306 0.90074 0.93655 1.25329 0.96107 0.94674 0.99540 1.70125 1.17070 1.50297 1.16352 0.86396 0.80771 0.79557 0.79865 1.17343 1.22263 1.20146 1.23056 1.03164 1.03164 0.94131 1.22250 0.93004 1.05040 0.98793 1.21910 0.91636 0.94030 0.86679 0.90975 1.86513 1.71181 1.25128 1.54032 1.22350 0.97704 1.02363 0.97397 1.21681 0.95085 1.01208 1.02142 0.93018 0.91729 0.95417 0.90443 0.91376 0.85122 0.93063 0.93145 0.93460 0.89541 0.91532 0.92379 0.91504 0.77106 0.89541 0.92973 0.94409 0.91192 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.33 8.51 71.98 0.61 -3.72 16 2 C -0.11 -3.26 4.88 30.59 0.15 -3.11 16 3 C 0.06 2.23 1.09 44.91 0.05 2.28 16 4 H 0.05 2.29 5.60 -2.38 -0.01 2.28 16 5 N -0.65 -24.89 6.12 -491.55 -3.01 -27.90 16 6 C 0.10 4.35 5.18 86.30 0.45 4.79 16 7 C -0.01 -0.64 1.78 -52.93 -0.09 -0.74 16 8 C -0.48 -24.52 6.15 25.60 0.16 -24.37 16 9 H 0.05 2.35 7.24 -2.91 -0.02 2.33 16 10 C 0.04 2.29 4.55 84.66 0.39 2.67 16 11 N -0.90 -49.29 11.88 21.45 0.25 -49.04 16 12 Si 0.91 41.07 29.25 68.60 2.01 43.08 16 13 H -0.25 -10.41 5.41 99.48 0.54 -9.87 16 14 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 15 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 16 C -0.20 -8.55 9.88 30.60 0.30 -8.25 16 17 C -0.15 -7.26 8.87 30.59 0.27 -6.99 16 18 C 0.12 3.92 2.57 30.59 0.08 4.00 16 19 H 0.07 2.86 7.38 -2.39 -0.02 2.84 16 20 O -0.56 -16.74 12.73 -148.98 -1.90 -18.63 16 21 C -0.16 -4.82 5.25 30.60 0.16 -4.66 16 22 C -0.14 -3.88 9.81 71.98 0.71 -3.18 16 23 H 0.05 1.69 6.75 -2.38 -0.02 1.67 16 24 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.03 0.98 7.80 -2.38 -0.02 0.96 16 26 H 0.08 2.02 7.05 -2.39 -0.02 2.00 16 27 H 0.07 1.78 6.41 -2.39 -0.02 1.76 16 28 H 0.33 13.44 7.59 -89.69 -0.68 12.76 16 29 H 0.05 2.31 5.54 -2.39 -0.01 2.29 16 30 H 0.05 2.00 7.94 -2.39 -0.02 1.98 16 31 H 0.26 13.65 8.32 -92.71 -0.77 12.88 16 32 H 0.09 3.30 8.08 -2.39 -0.02 3.28 16 33 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 34 H 0.06 3.08 7.61 -2.39 -0.02 3.06 16 35 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 36 H 0.38 8.64 7.34 -74.06 -0.54 8.10 16 37 H 0.09 2.16 6.68 -2.38 -0.02 2.14 16 38 H 0.05 1.84 6.09 -2.39 -0.01 1.82 16 39 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 1.72 7.82 -2.39 -0.02 1.70 16 41 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -54.81 310.08 0.20 -54.61 By element: Atomic # 1 Polarization: 39.52 SS G_CDS: -0.38 Total: 39.14 kcal Atomic # 6 Polarization: -44.49 SS G_CDS: 3.23 Total: -41.26 kcal Atomic # 7 Polarization: -74.18 SS G_CDS: -2.75 Total: -76.94 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -1.90 Total: -18.63 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.01 Total: 43.08 kcal Total: -54.81 0.20 -54.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313199205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.764 kcal (2) G-P(sol) polarization free energy of solvation -54.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds