Wall clock time and date at job start Mon Mar 30 2020 04:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47011 * 2 1 4 4 H 1.08996 * 109.47323 * 305.00571 * 3 2 1 5 5 O 1.42901 * 109.46980 * 65.00715 * 3 2 1 6 6 C 1.53007 * 109.46910 * 185.00000 * 3 2 1 7 7 H 1.08996 * 109.46849 * 55.00502 * 6 3 2 8 8 C 1.52999 * 109.47118 * 295.00062 * 6 3 2 9 9 C 1.53005 * 109.46774 * 174.74996 * 8 6 3 10 10 N 1.46906 * 109.46726 * 175.00223 * 6 3 2 11 11 C 1.46897 * 110.99838 * 226.60617 * 10 6 3 12 12 C 1.52998 * 109.47050 * 84.63174 * 11 10 6 13 13 C 1.50702 * 115.56135 * 39.40062 * 12 11 10 14 14 H 1.08003 * 119.99854 * 260.58227 * 13 12 11 15 15 C 1.37876 * 120.00100 * 80.58628 * 13 12 11 16 16 N 1.31520 * 119.99840 * 2.48455 * 15 13 12 17 17 Si 1.86800 * 120.00028 * 182.48967 * 15 13 12 18 18 H 1.48502 * 109.47320 * 59.99891 * 17 15 13 19 19 H 1.48507 * 109.47047 * 179.97438 * 17 15 13 20 20 H 1.48491 * 109.47042 * 299.99442 * 17 15 13 21 21 C 1.53006 * 117.50085 * 185.08770 * 12 11 10 22 22 C 1.53005 * 60.02930 * 107.48125 * 21 12 11 23 23 H 1.09000 * 109.47202 * 59.99324 * 1 2 3 24 24 H 1.08997 * 109.47276 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.47116 * 299.99462 * 1 2 3 26 26 H 1.09000 * 109.47431 * 240.00786 * 2 1 3 27 27 H 1.08994 * 109.47678 * 120.00196 * 2 1 3 28 28 H 0.96700 * 114.00024 * 59.99473 * 5 3 2 29 29 H 1.08995 * 109.47313 * 294.75123 * 8 6 3 30 30 H 1.09002 * 109.46931 * 54.75371 * 8 6 3 31 31 H 1.09000 * 109.46940 * 301.23378 * 9 8 6 32 32 H 1.08995 * 109.47092 * 61.23314 * 9 8 6 33 33 H 1.09001 * 109.47134 * 181.23750 * 9 8 6 34 34 H 1.00896 * 110.99933 * 350.56444 * 10 6 3 35 35 H 1.09000 * 109.47049 * 324.63861 * 11 10 6 36 36 H 1.08996 * 109.47311 * 204.63375 * 11 10 6 37 37 H 0.97000 * 119.99850 * 180.02562 * 16 15 13 38 38 H 1.08997 * 117.50143 * 214.97798 * 21 12 11 39 39 H 1.08993 * 117.49782 * 359.97438 * 21 12 11 40 40 H 1.09000 * 117.49804 * 107.50907 * 22 21 12 41 41 H 1.09000 * 117.49857 * 252.51833 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 8 1.6620 2.0814 1.2211 6 6 3.5648 1.4444 -0.1257 7 1 3.8570 0.8802 -1.0113 8 6 4.1798 0.7976 1.1170 9 6 5.6944 0.6806 0.9344 10 7 4.0445 2.8277 -0.2461 11 6 5.0219 2.9530 -1.3355 12 6 4.2850 3.1535 -2.6613 13 6 3.0728 4.0470 -2.6027 14 1 2.0849 3.6139 -2.5473 15 6 3.2248 5.4172 -2.6200 16 7 4.4241 5.9443 -2.7368 17 14 1.7275 6.5250 -2.4773 18 1 1.0342 6.2572 -1.1917 19 1 2.1571 7.9459 -2.5209 20 1 0.8011 6.2527 -3.6054 21 6 5.1259 3.1866 -3.9391 22 6 4.2464 1.9723 -3.6341 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.0142 1.6541 2.0139 29 1 3.9656 1.4131 1.9907 30 1 3.7531 -0.1954 1.2587 31 1 5.9084 0.0832 0.0482 32 1 6.1238 1.6752 0.8146 33 1 6.1299 0.1999 1.8104 34 1 3.2750 3.4673 -0.3753 35 1 5.6250 2.0466 -1.3886 36 1 5.6690 3.8094 -1.1464 37 1 4.5311 6.9083 -2.7486 38 1 4.8023 3.8545 -4.7374 39 1 6.2041 3.0659 -3.8352 40 1 3.3443 1.8413 -4.2318 41 1 4.7460 1.0528 -3.3293 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313199207.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:14 Heat of formation + Delta-G solvation = -50.176675 kcal Electronic energy + Delta-G solvation = -18892.960313 eV Core-core repulsion = 16193.677664 eV Total energy + Delta-G solvation = -2699.282650 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.73065 -36.72520 -34.29140 -32.47269 -31.95983 -31.25435 -27.80807 -25.55454 -24.27143 -23.04586 -21.45867 -21.08837 -19.67625 -19.07154 -16.23597 -15.99610 -15.37261 -14.94067 -14.77280 -14.58591 -13.91352 -13.47642 -13.04092 -12.84525 -12.49196 -12.32507 -11.91650 -11.79060 -11.64317 -11.40190 -11.25605 -10.95404 -10.91867 -10.85055 -10.56307 -10.45628 -10.39036 -10.19686 -9.88176 -9.74761 -9.28348 -8.91050 -8.47112 -7.99739 -7.21109 -6.04848 -4.13183 3.32104 3.36587 3.40664 4.39825 4.68928 5.00532 5.15253 5.25058 5.28377 5.32847 5.36410 5.51362 5.59007 5.75391 5.92931 5.97478 6.00938 6.09010 6.12044 6.21935 6.26135 6.27746 6.33896 6.39377 6.54598 6.57239 6.65272 6.71774 6.75592 6.78032 7.12021 7.27593 7.44610 7.55776 7.84206 8.01900 8.15771 8.46211 8.66979 8.90175 9.54191 11.03237 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.018694 B = 0.009283 C = 0.007710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.482226 B = 3015.415784 C = 3630.734890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.154 4.154 3 C 0.097 3.903 4 H 0.104 0.896 5 O -0.553 6.553 6 C 0.059 3.941 7 H 0.057 0.943 8 C -0.115 4.115 9 C -0.143 4.143 10 N -0.670 5.670 11 C 0.101 3.899 12 C 0.018 3.982 13 C -0.500 4.500 14 H 0.055 0.945 15 C 0.078 3.922 16 N -0.870 5.870 17 Si 0.886 3.114 18 H -0.272 1.272 19 H -0.287 1.287 20 H -0.279 1.279 21 C -0.159 4.159 22 C -0.217 4.217 23 H 0.053 0.947 24 H 0.047 0.953 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.364 0.636 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.043 0.957 32 H 0.067 0.933 33 H 0.040 0.960 34 H 0.362 0.638 35 H 0.035 0.965 36 H 0.068 0.932 37 H 0.261 0.739 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.970 -10.324 6.024 12.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.193 4.193 3 C 0.037 3.963 4 H 0.122 0.878 5 O -0.357 6.357 6 C -0.052 4.052 7 H 0.075 0.925 8 C -0.154 4.154 9 C -0.200 4.200 10 N -0.304 5.304 11 C -0.028 4.028 12 C 0.016 3.984 13 C -0.538 4.538 14 H 0.073 0.927 15 C -0.127 4.127 16 N -0.505 5.505 17 Si 0.713 3.287 18 H -0.197 1.197 19 H -0.213 1.213 20 H -0.205 1.205 21 C -0.197 4.197 22 C -0.254 4.254 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.211 0.789 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.186 0.814 35 H 0.054 0.946 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.699 -9.776 6.100 11.648 hybrid contribution -0.944 0.157 -0.673 1.170 sum -2.643 -9.619 5.427 11.356 Atomic orbital electron populations 1.21698 0.95627 1.00751 1.02405 1.22264 0.96643 0.98087 1.02258 1.22405 0.94041 0.92017 0.87841 0.87781 1.86610 1.76458 1.57337 1.15345 1.22156 0.93004 0.92970 0.97089 0.92510 1.21605 0.96220 0.98646 0.98903 1.21667 0.96210 1.02265 0.99869 1.60888 1.20288 1.03789 1.45438 1.21604 0.93460 0.98523 0.89256 1.19764 0.96701 0.93642 0.88288 1.20246 0.90875 0.90034 1.52657 0.92687 1.24949 0.95541 0.98004 0.94159 1.69996 1.21303 1.11503 1.47734 0.86759 0.83301 0.79696 0.78936 1.19705 1.21308 1.20461 1.22457 0.94631 0.99077 1.03581 1.23017 1.01739 0.92156 1.08472 0.92739 0.93429 0.92260 0.91401 0.91859 0.78892 0.91773 0.93077 0.93802 0.91418 0.94056 0.81351 0.94624 0.91344 0.92945 0.90346 0.92177 0.91003 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.81 37.15 0.36 -1.45 16 2 C -0.15 -1.99 5.25 -26.73 -0.14 -2.13 16 3 C 0.10 1.54 2.49 -26.72 -0.07 1.47 16 4 H 0.10 1.96 8.11 -51.93 -0.42 1.54 16 5 O -0.55 -8.85 12.69 -35.23 -0.45 -9.30 16 6 C 0.06 0.98 1.87 -67.71 -0.13 0.86 16 7 H 0.06 1.02 7.26 -51.93 -0.38 0.64 16 8 C -0.12 -1.61 4.89 -26.73 -0.13 -1.74 16 9 C -0.14 -2.01 8.98 37.16 0.33 -1.67 16 10 N -0.67 -13.52 6.08 -106.72 -0.65 -14.17 16 11 C 0.10 2.22 5.28 -3.83 -0.02 2.20 16 12 C 0.02 0.42 1.59 -155.62 -0.25 0.17 16 13 C -0.50 -12.99 7.03 -34.44 -0.24 -13.23 16 14 H 0.06 1.44 7.81 -52.48 -0.41 1.03 16 15 C 0.08 2.09 5.44 -17.82 -0.10 1.99 16 16 N -0.87 -24.19 12.91 55.43 0.72 -23.47 16 17 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C -0.16 -3.74 9.49 -26.73 -0.25 -4.00 16 22 C -0.22 -4.68 9.74 -26.69 -0.26 -4.94 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.74 7.82 -51.93 -0.41 0.33 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.72 6.70 -51.93 -0.35 0.37 16 28 H 0.36 4.60 7.32 45.56 0.33 4.93 16 29 H 0.06 0.89 7.01 -51.93 -0.36 0.52 16 30 H 0.05 0.61 6.44 -51.93 -0.33 0.28 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.08 7.14 -51.93 -0.37 0.71 16 33 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.36 8.30 6.19 -39.29 -0.24 8.06 16 35 H 0.04 0.72 6.60 -51.93 -0.34 0.38 16 36 H 0.07 1.68 8.14 -51.93 -0.42 1.25 16 37 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 LS Contribution 322.48 15.07 4.86 4.86 Total: -1.00 -26.98 322.48 -8.07 -35.05 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -6.64 Total: 13.52 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: -0.89 Total: -22.47 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 0.07 Total: -37.64 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -0.45 Total: -9.30 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -26.98 -8.07 -35.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313199207.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.123 kcal (2) G-P(sol) polarization free energy of solvation -26.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds