Wall clock time and date at job start Mon Mar 30 2020 05:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.05605 * 2 1 4 4 C 1.54264 * 110.03459 * 238.58019 * 2 1 3 5 5 C 1.54891 * 104.19914 * 264.32816 * 4 2 1 6 6 C 1.54887 * 102.74610 * 322.05789 * 5 4 2 7 7 C 1.53876 * 110.02719 * 121.41698 * 2 1 3 8 8 O 1.42891 * 110.07617 * 359.97438 * 7 2 1 9 9 C 1.53006 * 110.03052 * 238.56781 * 7 2 1 10 10 N 1.46898 * 109.47215 * 186.37878 * 9 7 2 11 11 C 1.46895 * 110.99994 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46985 * 180.02562 * 11 10 9 13 13 C 1.52999 * 109.46749 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.46831 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00148 * 359.97438 * 14 13 12 16 16 C 1.37882 * 120.00029 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99799 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00140 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47230 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47435 * 119.99271 * 18 16 14 21 21 H 1.48490 * 109.47335 * 239.99945 * 18 16 14 22 22 H 1.08992 * 109.47474 * 298.58673 * 1 2 3 23 23 H 1.09007 * 109.46738 * 58.58307 * 1 2 3 24 24 H 1.08997 * 109.46859 * 178.57783 * 1 2 3 25 25 H 1.08998 * 110.48383 * 145.64543 * 4 2 1 26 26 H 1.09002 * 110.48235 * 23.00969 * 4 2 1 27 27 H 1.08998 * 110.75336 * 203.74159 * 5 4 2 28 28 H 1.08996 * 110.75369 * 80.37418 * 5 4 2 29 29 H 1.09005 * 110.48774 * 279.26461 * 6 5 4 30 30 H 1.09000 * 110.48681 * 156.62216 * 6 5 4 31 31 H 0.96700 * 114.00040 * 179.28577 * 8 7 2 32 32 H 1.09000 * 109.47225 * 306.38603 * 9 7 2 33 33 H 1.09005 * 109.46733 * 66.38004 * 9 7 2 34 34 H 1.00907 * 110.99781 * 56.05173 * 10 9 7 35 35 H 1.09000 * 109.47555 * 300.00442 * 11 10 9 36 36 H 1.09004 * 109.47007 * 60.00435 * 11 10 9 37 37 H 1.08996 * 109.47259 * 299.99927 * 12 11 10 38 38 H 1.08991 * 109.47312 * 60.00477 * 12 11 10 39 39 H 1.09004 * 109.47291 * 299.99305 * 13 12 11 40 40 H 1.08994 * 109.47631 * 59.99968 * 13 12 11 41 41 H 0.97004 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0585 -0.7555 -1.2368 5 6 2.3281 -2.1902 -0.7191 6 6 2.8874 -1.9407 0.7036 7 6 2.0570 -0.7536 1.2338 8 8 0.9641 -1.2329 2.0196 9 6 2.9408 0.1703 2.0742 10 7 3.5589 -0.5995 3.1620 11 6 4.4170 0.2569 3.9914 12 6 5.0421 -0.5785 5.1105 13 6 5.9354 0.3137 5.9747 14 6 6.5515 -0.5092 7.0767 15 1 6.3280 -1.5631 7.1532 16 6 7.3999 0.0835 7.9878 17 7 7.6717 1.3669 7.8949 18 14 8.1631 -0.9364 9.3541 19 1 7.7004 -2.3429 9.2394 20 1 9.6429 -0.8908 9.2384 21 1 7.7523 -0.3866 10.6708 22 1 -0.3634 0.4917 0.9023 23 1 -0.3633 0.5357 -0.8771 24 1 -0.3633 -1.0273 -0.0255 25 1 2.9811 -0.3001 -1.5965 26 1 1.3062 -0.7696 -2.0254 27 1 3.0676 -2.6931 -1.3422 28 1 1.4031 -2.7652 -0.6752 29 1 3.9440 -1.6767 0.6572 30 1 2.7401 -2.8197 1.3310 31 1 1.2322 -1.7265 2.8067 32 1 3.7201 0.5995 1.4445 33 1 2.3324 0.9706 2.4956 34 1 4.0762 -1.3864 2.7995 35 1 5.2066 0.6864 3.3747 36 1 3.8192 1.0581 4.4262 37 1 4.2528 -1.0082 5.7274 38 1 5.6399 -1.3793 4.6756 39 1 6.7248 0.7437 5.3582 40 1 5.3373 1.1144 6.4098 41 1 8.2682 1.7839 8.5362 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328013821.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:54 Heat of formation + Delta-G solvation = -106.717872 kcal Electronic energy + Delta-G solvation = -17555.164957 eV Core-core repulsion = 14853.430497 eV Total energy + Delta-G solvation = -2701.734460 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.68248 -37.48598 -35.84448 -35.30103 -33.15637 -31.95920 -29.90831 -27.70104 -26.70445 -24.65558 -23.59736 -21.96897 -21.51944 -20.25635 -18.50739 -17.46854 -16.91131 -16.65526 -16.57244 -16.33174 -15.28084 -15.26531 -14.64048 -14.38177 -13.94593 -13.89364 -13.63667 -13.48819 -13.30114 -13.21328 -12.83084 -12.54708 -12.45777 -12.29485 -12.14660 -11.82774 -11.59798 -11.53414 -11.50031 -11.39308 -11.30131 -11.01662 -10.62584 -10.56818 -9.45126 -8.21068 -6.32182 1.39948 1.40450 1.54001 2.40578 3.09203 3.12215 3.33647 3.58607 3.80397 3.89629 4.18060 4.24049 4.36188 4.41001 4.42650 4.47188 4.64305 4.67676 4.69183 4.70448 4.90580 4.96761 4.99717 5.03817 5.06362 5.08669 5.17323 5.23247 5.26835 5.36472 5.43600 5.51166 5.58618 5.73374 5.84785 5.95717 6.25328 6.42223 6.85119 6.94862 7.37291 8.91137 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.053270 B = 0.003546 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.493407 B = 7893.350178 C = 7997.476836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.089 4.089 3 H 0.076 0.924 4 C -0.118 4.118 5 C -0.118 4.118 6 C -0.150 4.150 7 C 0.140 3.860 8 O -0.561 6.561 9 C 0.036 3.964 10 N -0.686 5.686 11 C 0.072 3.928 12 C -0.091 4.091 13 C 0.024 3.976 14 C -0.542 4.542 15 H 0.060 0.940 16 C -0.003 4.003 17 N -0.935 5.935 18 Si 0.967 3.033 19 H -0.261 1.261 20 H -0.277 1.277 21 H -0.278 1.278 22 H 0.043 0.957 23 H 0.060 0.940 24 H 0.052 0.948 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.384 0.616 32 H 0.039 0.961 33 H 0.066 0.934 34 H 0.345 0.655 35 H 0.022 0.978 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.052 0.948 39 H -0.010 1.010 40 H -0.010 1.010 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.790 -5.669 -18.609 22.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.108 4.108 3 H 0.095 0.905 4 C -0.155 4.155 5 C -0.155 4.155 6 C -0.188 4.188 7 C 0.099 3.901 8 O -0.368 6.368 9 C -0.093 4.093 10 N -0.318 5.318 11 C -0.057 4.057 12 C -0.129 4.129 13 C -0.014 4.014 14 C -0.580 4.580 15 H 0.079 0.921 16 C -0.200 4.200 17 N -0.575 5.575 18 Si 0.791 3.209 19 H -0.185 1.185 20 H -0.203 1.203 21 H -0.204 1.204 22 H 0.063 0.937 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.234 0.766 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.164 0.836 35 H 0.041 0.959 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.009 0.991 40 H 0.009 0.991 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.595 -5.180 -18.582 23.038 hybrid contribution 1.748 -0.050 0.911 1.972 sum -10.847 -5.230 -17.671 21.384 Atomic orbital electron populations 1.21445 0.93923 1.01714 1.00828 1.21832 0.97244 0.98948 0.92803 0.90518 1.22458 1.01361 0.95200 0.96525 1.22425 1.00986 0.96946 0.95182 1.23048 0.99459 0.98280 0.98044 1.21816 0.85735 0.92469 0.90078 1.86456 1.33510 1.75546 1.41312 1.22740 0.97413 0.96834 0.92350 1.60431 1.37209 1.11303 1.22899 1.21822 0.93999 0.95548 0.94294 1.21365 0.97861 0.97871 0.95832 1.18986 0.93711 0.94721 0.93988 1.21735 1.27423 0.96127 1.12723 0.92128 1.26018 0.97143 0.96169 1.00710 1.70111 1.37362 1.12069 1.37964 0.85369 0.78038 0.79086 0.78374 1.18501 1.20298 1.20391 0.93741 0.92144 0.92882 0.90970 0.90293 0.90544 0.91529 0.91165 0.90642 0.76636 0.94271 0.91599 0.83645 0.95929 0.92310 0.92720 0.92941 0.99114 0.99149 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.25 8.08 71.98 0.58 -1.67 16 2 C -0.09 -1.62 3.16 -10.07 -0.03 -1.66 16 3 H 0.08 1.38 7.67 -2.39 -0.02 1.36 16 4 C -0.12 -1.74 6.37 31.67 0.20 -1.53 16 5 C -0.12 -1.79 6.91 31.88 0.22 -1.57 16 6 C -0.15 -2.67 5.00 31.67 0.16 -2.51 16 7 C 0.14 2.86 1.10 -10.07 -0.01 2.85 16 8 O -0.56 -12.81 11.13 -148.98 -1.66 -14.47 16 9 C 0.04 0.86 4.56 86.31 0.39 1.26 16 10 N -0.69 -18.58 6.09 -513.88 -3.13 -21.71 16 11 C 0.07 2.49 5.68 86.30 0.49 2.98 16 12 C -0.09 -3.78 5.41 30.59 0.17 -3.61 16 13 C 0.02 1.26 4.97 29.85 0.15 1.41 16 14 C -0.54 -31.32 9.11 25.60 0.23 -31.09 16 15 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 16 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 17 N -0.93 -57.57 13.29 21.45 0.28 -57.28 16 18 Si 0.97 44.63 29.54 68.60 2.03 46.65 16 19 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 22 H 0.04 0.94 7.87 -2.39 -0.02 0.92 16 23 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 24 H 0.05 1.04 7.87 -2.39 -0.02 1.02 16 25 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.08 1.01 7.84 -2.39 -0.02 0.99 16 27 H 0.08 0.99 8.14 -2.39 -0.02 0.98 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 29 H 0.07 1.24 7.49 -2.38 -0.02 1.22 16 30 H 0.07 1.34 8.05 -2.39 -0.02 1.32 16 31 H 0.38 8.03 8.69 -74.06 -0.64 7.39 16 32 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.34 8.51 7.28 -89.69 -0.65 7.86 16 35 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 39 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 40 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 41 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -63.87 323.69 0.22 -63.65 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -0.31 Total: 18.01 kcal Atomic # 6 Polarization: -37.85 SS G_CDS: 3.01 Total: -34.84 kcal Atomic # 7 Polarization: -76.15 SS G_CDS: -2.85 Total: -79.00 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: -1.66 Total: -14.47 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -63.87 0.22 -63.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328013821.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.069 kcal (2) G-P(sol) polarization free energy of solvation -63.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds