Wall clock time and date at job start Mon Mar 30 2020 04:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46932 * 2 1 4 4 N 1.46500 * 109.47172 * 120.00521 * 2 1 3 5 5 C 1.36931 * 119.99995 * 118.13445 * 4 2 1 6 6 H 1.08001 * 120.00145 * 150.81323 * 5 4 2 7 7 C 1.38816 * 120.00185 * 330.80956 * 5 4 2 8 8 N 1.31620 * 119.99634 * 341.39328 * 7 5 4 9 9 Si 1.86794 * 119.99928 * 161.38567 * 7 5 4 10 10 H 1.48497 * 109.47477 * 90.00525 * 9 7 5 11 11 H 1.48510 * 109.47034 * 210.00449 * 9 7 5 12 12 H 1.48497 * 109.47569 * 329.99951 * 9 7 5 13 13 C 1.46502 * 119.99584 * 298.13115 * 4 2 1 14 14 C 1.53001 * 109.47057 * 90.00679 * 13 4 2 15 15 H 1.09003 * 109.46934 * 304.99320 * 14 13 4 16 16 C 1.52994 * 109.47424 * 64.99618 * 14 13 4 17 17 C 1.53001 * 109.47154 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.46691 * 299.99591 * 17 16 14 19 19 C 1.52994 * 109.46987 * 60.00307 * 18 17 16 20 20 C 1.53000 * 109.47016 * 185.00022 * 14 13 4 21 21 H 1.09003 * 109.46695 * 299.99444 * 20 14 13 22 22 O 1.42896 * 109.47592 * 59.99224 * 20 14 13 23 23 H 1.09008 * 109.46847 * 299.99867 * 1 2 3 24 24 H 1.08997 * 109.47487 * 59.99383 * 1 2 3 25 25 H 1.08995 * 109.47136 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46838 * 240.00388 * 2 1 3 27 27 H 1.09002 * 109.46789 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47185 * 300.00175 * 3 2 1 29 29 H 1.09000 * 109.47042 * 60.00513 * 3 2 1 30 30 H 0.96998 * 119.99760 * 180.02562 * 8 7 5 31 31 H 1.08997 * 109.47602 * 329.99934 * 13 4 2 32 32 H 1.09000 * 109.46578 * 210.00030 * 13 4 2 33 33 H 1.09000 * 109.47087 * 299.99884 * 16 14 13 34 34 H 1.08994 * 109.47439 * 60.00102 * 16 14 13 35 35 H 1.09001 * 109.47235 * 180.02562 * 17 16 14 36 36 H 1.09003 * 109.47463 * 59.99543 * 17 16 14 37 37 H 1.08994 * 109.47203 * 299.99952 * 18 17 16 38 38 H 1.09000 * 109.46738 * 180.02562 * 18 17 16 39 39 H 1.09003 * 109.47309 * 59.99961 * 19 18 17 40 40 H 1.09000 * 109.47087 * 180.02562 * 19 18 17 41 41 H 0.96705 * 114.00023 * 180.02562 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.7738 -1.8259 1.0707 6 1 3.5052 -2.0740 1.8257 7 6 2.5996 -2.6579 -0.0267 8 7 1.4983 -2.5800 -0.7433 9 14 3.9282 -3.8878 -0.4866 10 1 3.6773 -5.1727 0.2142 11 1 3.9082 -4.1123 -1.9545 12 1 5.2554 -3.3561 -0.0853 13 6 1.6985 -0.1668 2.5263 14 6 0.3879 -0.7856 3.0165 15 1 -0.3955 -0.6083 2.2797 16 6 0.5756 -2.2917 3.2091 17 6 -0.7352 -2.9105 3.6987 18 6 -1.1344 -2.2720 5.0306 19 6 -1.3220 -0.7658 4.8381 20 6 -0.0108 -0.1469 4.3485 21 1 0.7727 -0.3242 5.0853 22 8 -0.1860 1.2598 4.1687 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.3764 -3.1616 -1.5100 31 1 1.5917 0.9167 2.4741 32 1 2.5012 -0.4198 3.2190 33 1 0.8595 -2.7467 2.2601 34 1 1.3589 -2.4690 3.9458 35 1 -0.6014 -3.9835 3.8363 36 1 -1.5185 -2.7332 2.9616 37 1 -0.3513 -2.4493 5.7677 38 1 -2.0680 -2.7131 5.3796 39 1 -2.1052 -0.5885 4.1010 40 1 -1.6059 -0.3109 5.7870 41 1 -0.4397 1.7307 4.9744 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328528205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:33 Heat of formation + Delta-G solvation = -55.590168 kcal Electronic energy + Delta-G solvation = -19304.416925 eV Core-core repulsion = 16604.899529 eV Total energy + Delta-G solvation = -2699.517396 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.83770 -36.28255 -35.01764 -31.81715 -31.54313 -29.20690 -28.84241 -25.91564 -25.19876 -22.84226 -21.96544 -20.64916 -19.28791 -18.75271 -16.81077 -16.61745 -14.94066 -14.59891 -14.18540 -13.97242 -13.71682 -13.34828 -13.08596 -12.48371 -12.35884 -12.21613 -11.96862 -11.55698 -11.33192 -11.12218 -11.03699 -10.87081 -10.83096 -10.65918 -10.38305 -10.25220 -10.00036 -9.84042 -9.71523 -9.58327 -9.32051 -9.18347 -9.04507 -8.28677 -6.51662 -5.69955 -3.11312 3.40800 3.49005 3.51625 4.56711 4.63736 5.09388 5.13199 5.36446 5.45642 5.58232 5.67129 5.77487 5.87524 5.99482 6.03193 6.15712 6.25596 6.32755 6.43405 6.48917 6.50520 6.56080 6.63005 6.69253 6.84418 6.85776 6.92471 6.99607 7.02462 7.13791 7.21260 7.41386 7.53622 7.79779 7.83792 7.96939 8.03809 8.59129 9.34551 9.98928 10.53877 11.35979 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022685 B = 0.009459 C = 0.007658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.981048 B = 2959.369272 C = 3655.313744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.182 3.818 3 C -0.165 4.165 4 N -0.583 5.583 5 C -0.243 4.243 6 H 0.061 0.939 7 C 0.004 3.996 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.289 1.289 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.155 3.845 14 C -0.098 4.098 15 H 0.078 0.922 16 C -0.105 4.105 17 C -0.121 4.121 18 C -0.114 4.114 19 C -0.147 4.147 20 C 0.106 3.894 21 H 0.045 0.955 22 O -0.563 6.563 23 H 0.030 0.970 24 H 0.022 0.978 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.043 0.957 28 H 0.036 0.964 29 H 0.040 0.960 30 H 0.251 0.749 31 H 0.046 0.954 32 H 0.033 0.967 33 H 0.106 0.894 34 H 0.044 0.956 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.052 0.948 41 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.500 3.636 8.835 10.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.075 3.925 3 C -0.224 4.224 4 N -0.303 5.303 5 C -0.373 4.373 6 H 0.078 0.922 7 C -0.195 4.195 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.216 1.216 11 H -0.218 1.218 12 H -0.207 1.207 13 C 0.029 3.971 14 C -0.119 4.119 15 H 0.096 0.904 16 C -0.142 4.142 17 C -0.159 4.159 18 C -0.152 4.152 19 C -0.185 4.185 20 C 0.047 3.953 21 H 0.063 0.937 22 O -0.367 6.367 23 H 0.049 0.951 24 H 0.041 0.959 25 H 0.088 0.912 26 H 0.113 0.887 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.124 0.876 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -4.351 3.380 8.049 9.753 hybrid contribution 0.313 -0.641 0.415 0.825 sum -4.038 2.739 8.464 9.769 Atomic orbital electron populations 1.22210 0.98985 1.01747 0.97458 1.20230 0.91514 0.88563 0.92149 1.22371 1.00415 1.00269 0.99315 1.43984 1.59953 1.27361 0.98998 1.19073 1.11840 0.98941 1.07484 0.92160 1.24959 0.96366 0.97487 1.00656 1.70030 1.23462 1.40148 1.20103 0.86470 0.82379 0.81478 0.77477 1.21643 1.21779 1.20725 1.20805 0.92568 0.96110 0.87651 1.21976 1.01483 0.94928 0.93501 0.90384 1.21524 0.94635 0.94685 1.03343 1.21605 0.99313 0.99007 0.95928 1.21479 1.00484 0.94788 0.98428 1.22245 0.99331 0.96518 1.00425 1.22046 0.94387 0.79957 0.98902 0.93730 1.86615 1.92172 1.20259 1.37666 0.95054 0.95880 0.91170 0.88699 0.93818 0.94491 0.94101 0.93891 0.93542 0.94846 0.87605 0.93747 0.92770 0.92414 0.92454 0.92805 0.91568 0.92957 0.79127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 8.00 37.16 0.30 -2.97 16 2 C 0.18 4.31 2.39 -67.93 -0.16 4.15 16 3 C -0.16 -3.41 9.14 37.16 0.34 -3.07 16 4 N -0.58 -14.12 2.29 -165.66 -0.38 -14.50 16 5 C -0.24 -6.39 7.51 -15.06 -0.11 -6.50 16 6 H 0.06 1.60 7.90 -52.49 -0.41 1.18 16 7 C 0.00 0.10 4.85 -17.43 -0.08 0.02 16 8 N -0.89 -24.57 10.39 55.49 0.58 -23.99 16 9 Si 0.89 21.37 29.59 -169.99 -5.03 16.34 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.16 3.34 4.56 -4.04 -0.02 3.32 16 14 C -0.10 -1.90 1.90 -90.62 -0.17 -2.07 16 15 H 0.08 1.69 5.35 -51.93 -0.28 1.41 16 16 C -0.10 -2.04 4.76 -26.73 -0.13 -2.17 16 17 C -0.12 -2.00 5.92 -26.73 -0.16 -2.16 16 18 C -0.11 -1.58 5.92 -26.73 -0.16 -1.73 16 19 C -0.15 -2.04 5.55 -26.71 -0.15 -2.19 16 20 C 0.11 1.69 2.90 -26.71 -0.08 1.62 16 21 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 22 O -0.56 -8.76 12.56 -35.23 -0.44 -9.21 16 23 H 0.03 0.68 6.20 -51.92 -0.32 0.35 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 1.75 7.40 -51.93 -0.38 1.37 16 26 H 0.10 2.55 5.84 -51.93 -0.30 2.24 16 27 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.04 0.82 6.60 -51.93 -0.34 0.47 16 30 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 31 H 0.05 1.00 5.72 -51.93 -0.30 0.70 16 32 H 0.03 0.72 8.04 -51.93 -0.42 0.30 16 33 H 0.11 2.53 6.35 -51.93 -0.33 2.20 16 34 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.36 3.85 9.08 45.56 0.41 4.26 16 LS Contribution 305.90 15.07 4.61 4.61 Total: -1.00 -27.61 305.90 -7.71 -35.32 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.46 Total: 5.19 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -0.58 Total: -13.76 kcal Atomic # 7 Polarization: -38.68 SS G_CDS: 0.20 Total: -38.49 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.44 Total: -9.21 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.61 -7.71 -35.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328528205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.272 kcal (2) G-P(sol) polarization free energy of solvation -27.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds