Wall clock time and date at job start Mon Mar 30 2020 04:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46932 * 2 1 4 4 N 1.46500 * 109.47172 * 120.00521 * 2 1 3 5 5 C 1.36931 * 119.99995 * 118.13445 * 4 2 1 6 6 H 1.08001 * 120.00145 * 150.81323 * 5 4 2 7 7 C 1.38816 * 120.00185 * 330.80956 * 5 4 2 8 8 N 1.31620 * 119.99634 * 341.39328 * 7 5 4 9 9 Si 1.86794 * 119.99928 * 161.38567 * 7 5 4 10 10 H 1.48497 * 109.47477 * 90.00525 * 9 7 5 11 11 H 1.48510 * 109.47034 * 210.00449 * 9 7 5 12 12 H 1.48497 * 109.47569 * 329.99951 * 9 7 5 13 13 C 1.46502 * 119.99584 * 298.13115 * 4 2 1 14 14 C 1.53001 * 109.47057 * 90.00679 * 13 4 2 15 15 H 1.09003 * 109.46934 * 304.99320 * 14 13 4 16 16 C 1.52994 * 109.47424 * 64.99618 * 14 13 4 17 17 C 1.53001 * 109.47154 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.46691 * 299.99591 * 17 16 14 19 19 C 1.52994 * 109.46987 * 60.00307 * 18 17 16 20 20 C 1.53000 * 109.47016 * 185.00022 * 14 13 4 21 21 H 1.09003 * 109.46695 * 299.99444 * 20 14 13 22 22 O 1.42896 * 109.47592 * 59.99224 * 20 14 13 23 23 H 1.09008 * 109.46847 * 299.99867 * 1 2 3 24 24 H 1.08997 * 109.47487 * 59.99383 * 1 2 3 25 25 H 1.08995 * 109.47136 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46838 * 240.00388 * 2 1 3 27 27 H 1.09002 * 109.46789 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47185 * 300.00175 * 3 2 1 29 29 H 1.09000 * 109.47042 * 60.00513 * 3 2 1 30 30 H 0.96998 * 119.99760 * 180.02562 * 8 7 5 31 31 H 1.08997 * 109.47602 * 329.99934 * 13 4 2 32 32 H 1.09000 * 109.46578 * 210.00030 * 13 4 2 33 33 H 1.09000 * 109.47087 * 299.99884 * 16 14 13 34 34 H 1.08994 * 109.47439 * 60.00102 * 16 14 13 35 35 H 1.09001 * 109.47235 * 180.02562 * 17 16 14 36 36 H 1.09003 * 109.47463 * 59.99543 * 17 16 14 37 37 H 1.08994 * 109.47203 * 299.99952 * 18 17 16 38 38 H 1.09000 * 109.46738 * 180.02562 * 18 17 16 39 39 H 1.09003 * 109.47309 * 59.99961 * 19 18 17 40 40 H 1.09000 * 109.47087 * 180.02562 * 19 18 17 41 41 H 0.96705 * 114.00023 * 180.02562 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.7738 -1.8259 1.0707 6 1 3.5052 -2.0740 1.8257 7 6 2.5996 -2.6579 -0.0267 8 7 1.4983 -2.5800 -0.7433 9 14 3.9282 -3.8878 -0.4866 10 1 3.6773 -5.1727 0.2142 11 1 3.9082 -4.1123 -1.9545 12 1 5.2554 -3.3561 -0.0853 13 6 1.6985 -0.1668 2.5263 14 6 0.3879 -0.7856 3.0165 15 1 -0.3955 -0.6083 2.2797 16 6 0.5756 -2.2917 3.2091 17 6 -0.7352 -2.9105 3.6987 18 6 -1.1344 -2.2720 5.0306 19 6 -1.3220 -0.7658 4.8381 20 6 -0.0108 -0.1469 4.3485 21 1 0.7727 -0.3242 5.0853 22 8 -0.1860 1.2598 4.1687 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.3764 -3.1616 -1.5100 31 1 1.5917 0.9167 2.4741 32 1 2.5012 -0.4198 3.2190 33 1 0.8595 -2.7467 2.2601 34 1 1.3589 -2.4690 3.9458 35 1 -0.6014 -3.9835 3.8363 36 1 -1.5185 -2.7332 2.9616 37 1 -0.3513 -2.4493 5.7677 38 1 -2.0680 -2.7131 5.3796 39 1 -2.1052 -0.5885 4.1010 40 1 -1.6059 -0.3109 5.7870 41 1 -0.4397 1.7307 4.9744 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328528205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:32 Heat of formation + Delta-G solvation = -72.188033 kcal Electronic energy + Delta-G solvation = -19305.136663 eV Core-core repulsion = 16604.899529 eV Total energy + Delta-G solvation = -2700.237134 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.24639 -38.01586 -36.28620 -33.79314 -33.15304 -30.77482 -30.35041 -27.69550 -26.94421 -24.65976 -23.30319 -22.10258 -20.79620 -20.51193 -18.55925 -18.01638 -16.67222 -16.19933 -15.94776 -15.49009 -15.24379 -14.71107 -14.57155 -14.16652 -14.13377 -13.61753 -13.45979 -13.30176 -13.02197 -12.91142 -12.71980 -12.66090 -12.34515 -12.18802 -12.06216 -11.81300 -11.71316 -11.48597 -11.42718 -11.23289 -10.96807 -10.68827 -10.52584 -10.29938 -8.47826 -7.73942 -5.16371 1.46775 1.50559 1.57750 2.58137 3.38307 3.47267 3.70454 3.92653 3.99508 4.22176 4.33337 4.42349 4.54294 4.58199 4.67589 4.70140 4.74298 4.84204 4.91159 4.95698 5.01343 5.06119 5.09376 5.16332 5.20668 5.26408 5.29591 5.36524 5.41976 5.48139 5.55412 5.71713 5.78345 5.86566 5.88783 6.05716 6.55063 7.07962 7.31481 8.04174 8.53446 9.29705 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022685 B = 0.009459 C = 0.007658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.981048 B = 2959.369272 C = 3655.313744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.178 3.822 3 C -0.152 4.152 4 N -0.594 5.594 5 C -0.243 4.243 6 H 0.054 0.946 7 C -0.039 4.039 8 N -0.914 5.914 9 Si 0.946 3.054 10 H -0.289 1.289 11 H -0.297 1.297 12 H -0.278 1.278 13 C 0.157 3.843 14 C -0.092 4.092 15 H 0.053 0.947 16 C -0.097 4.097 17 C -0.118 4.118 18 C -0.108 4.108 19 C -0.141 4.141 20 C 0.113 3.887 21 H 0.055 0.945 22 O -0.580 6.580 23 H 0.037 0.963 24 H 0.037 0.963 25 H 0.038 0.962 26 H 0.061 0.939 27 H 0.038 0.962 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.244 0.756 31 H 0.048 0.952 32 H 0.030 0.970 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.059 0.941 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.087 0.913 41 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.990 4.486 10.773 12.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.071 3.929 3 C -0.211 4.211 4 N -0.315 5.315 5 C -0.374 4.374 6 H 0.072 0.928 7 C -0.235 4.235 8 N -0.559 5.559 9 Si 0.776 3.224 10 H -0.216 1.216 11 H -0.223 1.223 12 H -0.204 1.204 13 C 0.032 3.968 14 C -0.113 4.113 15 H 0.071 0.929 16 C -0.135 4.135 17 C -0.155 4.155 18 C -0.145 4.145 19 C -0.179 4.179 20 C 0.054 3.946 21 H 0.073 0.927 22 O -0.388 6.388 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -4.844 4.252 10.019 11.913 hybrid contribution 0.474 -0.859 -0.169 0.996 sum -4.370 3.393 9.850 11.297 Atomic orbital electron populations 1.21985 0.98274 0.99933 0.98357 1.20195 0.92039 0.89896 0.90741 1.22197 1.00038 0.98177 1.00664 1.44124 1.60112 1.26988 1.00261 1.19171 1.11626 0.99409 1.07163 0.92839 1.25488 0.97830 0.99147 1.01040 1.70171 1.24643 1.40881 1.20247 0.85616 0.80488 0.79727 0.76601 1.21638 1.22325 1.20366 1.20835 0.93562 0.96114 0.86326 1.21745 0.99318 0.94974 0.95244 0.92908 1.21325 0.96439 0.94886 1.00863 1.21548 0.97057 0.99481 0.97459 1.21447 1.01981 0.94619 0.96502 1.22192 0.97527 0.96484 1.01687 1.21826 0.95964 0.80368 0.96443 0.92719 1.86545 1.92400 1.20007 1.39810 0.94451 0.94408 0.94327 0.92078 0.94245 0.92425 0.93355 0.94630 0.93390 0.95205 0.92638 0.93506 0.92240 0.93856 0.91234 0.90484 0.92749 0.89476 0.76302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.77 8.00 71.98 0.58 -5.19 16 2 C 0.18 8.52 2.39 44.99 0.11 8.62 16 3 C -0.15 -6.13 9.14 71.98 0.66 -5.47 16 4 N -0.59 -29.28 2.29 -678.02 -1.55 -30.83 16 5 C -0.24 -13.05 7.51 84.04 0.63 -12.42 16 6 H 0.05 2.90 7.90 -2.91 -0.02 2.88 16 7 C -0.04 -2.12 4.85 84.86 0.41 -1.71 16 8 N -0.91 -52.07 10.39 21.65 0.23 -51.85 16 9 Si 0.95 44.93 29.59 68.60 2.03 46.96 16 10 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 11 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 13 C 0.16 6.75 4.56 86.38 0.39 7.14 16 14 C -0.09 -3.54 1.90 -10.80 -0.02 -3.56 16 15 H 0.05 2.31 5.35 -2.39 -0.01 2.29 16 16 C -0.10 -3.84 4.76 30.59 0.15 -3.70 16 17 C -0.12 -3.81 5.92 30.60 0.18 -3.62 16 18 C -0.11 -2.64 5.92 30.59 0.18 -2.46 16 19 C -0.14 -3.44 5.55 30.61 0.17 -3.27 16 20 C 0.11 3.33 2.90 30.61 0.09 3.42 16 21 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 22 O -0.58 -16.42 12.56 -148.98 -1.87 -18.29 16 23 H 0.04 1.62 6.20 -2.38 -0.01 1.60 16 24 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 25 H 0.04 1.98 7.40 -2.39 -0.02 1.96 16 26 H 0.06 3.37 5.84 -2.39 -0.01 3.35 16 27 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.05 1.86 6.60 -2.39 -0.02 1.84 16 30 H 0.24 13.75 8.31 -92.71 -0.77 12.98 16 31 H 0.05 2.02 5.72 -2.39 -0.01 2.01 16 32 H 0.03 1.28 8.04 -2.39 -0.02 1.26 16 33 H 0.05 2.76 6.35 -2.39 -0.02 2.74 16 34 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.39 6.76 9.08 -74.05 -0.67 6.09 16 Total: -1.00 -60.77 305.90 2.67 -58.10 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.32 Total: 18.13 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: 3.52 Total: -22.22 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -1.33 Total: -82.68 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -1.87 Total: -18.29 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -60.77 2.67 -58.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328528205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.090 kcal (2) G-P(sol) polarization free energy of solvation -60.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds