Wall clock time and date at job start Mon Mar 30 2020 04:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47350 * 2 1 4 4 N 1.46497 * 109.46993 * 119.99578 * 2 1 3 5 5 C 1.36940 * 120.00534 * 294.96652 * 4 2 1 6 6 H 1.08004 * 119.99624 * 37.45727 * 5 4 2 7 7 C 1.38813 * 120.00026 * 217.46210 * 5 4 2 8 8 N 1.31609 * 120.00107 * 20.89098 * 7 5 4 9 9 Si 1.86800 * 119.99720 * 200.88540 * 7 5 4 10 10 H 1.48503 * 109.47127 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46790 * 120.00067 * 9 7 5 12 12 H 1.48499 * 109.47269 * 240.00126 * 9 7 5 13 13 C 1.46503 * 119.99939 * 114.96540 * 4 2 1 14 14 C 1.52998 * 109.47498 * 270.00152 * 13 4 2 15 15 H 1.09003 * 109.46621 * 54.99621 * 14 13 4 16 16 C 1.52997 * 109.46955 * 295.00065 * 14 13 4 17 17 C 1.52999 * 109.47153 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.47038 * 60.00090 * 17 16 14 19 19 C 1.53005 * 109.47116 * 300.00171 * 18 17 16 20 20 C 1.52992 * 109.47598 * 174.99590 * 14 13 4 21 21 H 1.09003 * 109.46613 * 60.00149 * 20 14 13 22 22 O 1.42903 * 109.47309 * 300.00322 * 20 14 13 23 23 H 1.09005 * 109.47546 * 303.38518 * 1 2 3 24 24 H 1.09003 * 109.47230 * 63.38503 * 1 2 3 25 25 H 1.08998 * 109.47087 * 183.38261 * 1 2 3 26 26 H 1.08996 * 109.47680 * 239.99963 * 2 1 3 27 27 H 1.08994 * 109.47564 * 181.56999 * 3 2 1 28 28 H 1.09001 * 109.46931 * 301.57626 * 3 2 1 29 29 H 1.09003 * 109.47050 * 61.56552 * 3 2 1 30 30 H 0.97004 * 119.99839 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.47363 * 149.99980 * 13 4 2 32 32 H 1.09006 * 109.46836 * 30.00523 * 13 4 2 33 33 H 1.09004 * 109.47347 * 59.99810 * 16 14 13 34 34 H 1.09003 * 109.47194 * 299.99813 * 16 14 13 35 35 H 1.08994 * 109.47549 * 300.00243 * 17 16 14 36 36 H 1.09004 * 109.47614 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.46820 * 59.99832 * 18 17 16 38 38 H 1.08995 * 109.47231 * 179.97438 * 18 17 16 39 39 H 1.08991 * 109.47042 * 179.97438 * 19 18 17 40 40 H 1.09005 * 109.46394 * 300.00000 * 19 18 17 41 41 H 0.96697 * 113.99961 * 179.97438 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6905 1.1962 5 6 1.7746 -0.1656 2.4373 6 1 0.8302 0.3159 2.6440 7 6 2.7413 -0.2524 3.4297 8 7 4.0018 -0.4474 3.1051 9 14 2.2532 -0.0924 5.2256 10 1 0.7867 0.1197 5.3230 11 1 2.6226 -1.3342 5.9514 12 1 2.9623 1.0638 5.8302 13 6 2.7673 -1.9427 1.0647 14 6 1.7952 -3.1238 1.0920 15 1 1.0367 -2.9880 0.3210 16 6 1.1208 -3.1977 2.4633 17 6 0.1482 -4.3785 2.4905 18 6 0.9146 -5.6766 2.2284 19 6 1.5890 -5.6027 0.8570 20 6 2.5619 -4.4216 0.8301 21 1 3.3203 -4.5574 1.6011 22 8 3.1917 -4.3526 -0.4508 23 1 -0.3634 0.5655 0.8581 24 1 -0.3634 0.4604 -0.9188 25 1 -0.3633 -1.0259 0.0606 26 1 1.8934 -0.5138 -0.8899 27 1 3.1296 1.4427 -0.0282 28 1 1.6538 1.9644 -0.8755 29 1 1.6998 1.9482 0.9037 30 1 4.6774 -0.5077 3.7986 31 1 3.4721 -2.0331 1.8913 32 1 3.3125 -1.9425 0.1208 33 1 0.5745 -2.2731 2.6499 34 1 1.8793 -3.3335 3.2344 35 1 -0.6101 -4.2424 1.7195 36 1 -0.3319 -4.4314 3.4676 37 1 1.6730 -5.8127 2.9994 38 1 0.2218 -6.5178 2.2482 39 1 2.1353 -6.5272 0.6705 40 1 0.8305 -5.4665 0.0861 41 1 3.6973 -5.1434 -0.6836 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328528263.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:52:36 Heat of formation + Delta-G solvation = -60.295028 kcal Electronic energy + Delta-G solvation = -19224.900992 eV Core-core repulsion = 16525.179578 eV Total energy + Delta-G solvation = -2699.721414 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.74665 -36.23398 -34.98860 -32.42418 -31.26040 -29.18657 -28.52187 -26.07604 -25.31478 -22.93903 -21.91422 -20.45603 -19.46895 -19.06380 -16.74173 -16.12961 -15.00966 -14.70199 -14.27212 -13.98974 -13.69311 -13.37661 -13.15859 -12.67775 -12.30070 -12.25749 -12.07519 -11.51240 -11.28537 -11.20175 -11.11966 -10.86907 -10.77970 -10.65545 -10.39479 -10.26676 -10.15337 -9.92686 -9.80685 -9.61149 -9.35285 -9.31846 -9.10790 -8.33162 -6.39947 -5.65950 -3.22851 3.37828 3.47651 3.49191 4.54583 4.69224 5.09987 5.14627 5.34915 5.45474 5.54276 5.73262 5.75159 5.88847 5.99201 6.03682 6.07966 6.15584 6.24226 6.31962 6.43197 6.48890 6.52327 6.56298 6.60884 6.69188 6.82485 6.86663 6.90305 7.08421 7.14907 7.27215 7.31484 7.40916 7.45806 7.86909 7.96042 8.12306 8.64963 9.33264 9.96920 10.56944 11.32697 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.018061 B = 0.010696 C = 0.008490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.888246 B = 2617.137761 C = 3297.326581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.162 3.838 3 C -0.144 4.144 4 N -0.579 5.579 5 C -0.241 4.241 6 H 0.057 0.943 7 C 0.013 3.987 8 N -0.886 5.886 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.292 1.292 13 C 0.156 3.844 14 C -0.089 4.089 15 H 0.055 0.945 16 C -0.100 4.100 17 C -0.124 4.124 18 C -0.114 4.114 19 C -0.147 4.147 20 C 0.109 3.891 21 H 0.049 0.951 22 O -0.563 6.563 23 H 0.050 0.950 24 H 0.033 0.967 25 H 0.043 0.957 26 H 0.044 0.956 27 H 0.047 0.953 28 H 0.027 0.973 29 H 0.056 0.944 30 H 0.251 0.749 31 H 0.092 0.908 32 H 0.029 0.971 33 H 0.090 0.910 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.261 -8.197 -3.790 9.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.055 3.945 3 C -0.203 4.203 4 N -0.299 5.299 5 C -0.371 4.371 6 H 0.075 0.925 7 C -0.187 4.187 8 N -0.530 5.530 9 Si 0.713 3.287 10 H -0.201 1.201 11 H -0.216 1.216 12 H -0.219 1.219 13 C 0.029 3.971 14 C -0.110 4.110 15 H 0.074 0.926 16 C -0.137 4.137 17 C -0.161 4.161 18 C -0.152 4.152 19 C -0.185 4.185 20 C 0.050 3.950 21 H 0.067 0.933 22 O -0.367 6.367 23 H 0.069 0.931 24 H 0.052 0.948 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.047 0.953 33 H 0.108 0.892 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -4.395 -7.586 -3.689 9.512 hybrid contribution 0.060 -0.624 1.084 1.252 sum -4.335 -8.210 -2.606 9.643 Atomic orbital electron populations 1.22202 0.99093 1.00452 0.99500 1.20383 0.91813 0.92126 0.90153 1.22039 1.00758 0.98012 0.99524 1.43893 1.64254 1.20847 1.00953 1.18869 0.96956 1.33919 0.87332 0.92500 1.25090 0.94551 1.00842 0.98217 1.70007 0.99339 1.52170 1.31438 0.86538 0.78272 0.77319 0.86614 1.20125 1.21553 1.21895 1.20908 0.92762 0.82581 1.00825 1.21746 0.98575 0.94018 0.96667 0.92635 1.21482 0.97856 0.97961 0.96450 1.21663 0.98572 0.95327 1.00581 1.21467 0.99190 0.97885 0.96665 1.22255 0.99801 0.98308 0.98131 1.21969 0.93172 0.95744 0.84163 0.93286 1.86607 1.69924 1.43297 1.36845 0.93093 0.94814 0.93758 0.93727 0.93428 0.95385 0.92477 0.93904 0.89077 0.95271 0.89167 0.92835 0.92653 0.92773 0.92253 0.92802 0.92873 0.91727 0.79119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.19 37.15 0.34 -2.60 16 2 C 0.16 3.51 3.37 -67.94 -0.23 3.28 16 3 C -0.14 -3.04 9.11 37.16 0.34 -2.70 16 4 N -0.58 -14.02 2.24 -165.66 -0.37 -14.39 16 5 C -0.24 -6.25 5.98 -15.06 -0.09 -6.34 16 6 H 0.06 1.51 7.14 -52.48 -0.37 1.14 16 7 C 0.01 0.34 4.97 -17.43 -0.09 0.25 16 8 N -0.89 -25.13 11.43 55.49 0.63 -24.50 16 9 Si 0.88 21.24 29.60 -169.99 -5.03 16.21 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 C 0.16 3.67 4.70 -4.04 -0.02 3.66 16 14 C -0.09 -1.77 2.14 -90.63 -0.19 -1.97 16 15 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 16 C -0.10 -1.95 4.76 -26.73 -0.13 -2.08 16 17 C -0.12 -1.96 5.92 -26.73 -0.16 -2.12 16 18 C -0.11 -1.60 5.92 -26.73 -0.16 -1.75 16 19 C -0.15 -2.08 5.55 -26.71 -0.15 -2.23 16 20 C 0.11 1.86 2.90 -26.72 -0.08 1.78 16 21 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 22 O -0.56 -9.42 12.56 -35.23 -0.44 -9.86 16 23 H 0.05 1.01 7.32 -51.93 -0.38 0.63 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.04 0.95 7.77 -51.93 -0.40 0.55 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 1.27 7.50 -51.93 -0.39 0.88 16 30 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.09 2.43 5.49 -51.93 -0.28 2.15 16 32 H 0.03 0.71 7.28 -51.93 -0.38 0.33 16 33 H 0.09 1.98 6.35 -51.93 -0.33 1.65 16 34 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.36 4.26 9.08 45.56 0.41 4.67 16 LS Contribution 313.75 15.07 4.73 4.73 Total: -1.00 -28.32 313.75 -7.85 -36.17 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -6.76 Total: 4.46 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -0.61 Total: -12.82 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.26 Total: -38.89 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -0.44 Total: -9.86 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.32 -7.85 -36.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328528263.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.124 kcal (2) G-P(sol) polarization free energy of solvation -28.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds