Wall clock time and date at job start Mon Mar 30 2020 05:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 110.01845 * 2 1 4 4 C 1.54272 * 110.03026 * 121.38604 * 2 1 3 5 5 C 1.54892 * 104.19455 * 142.94287 * 4 2 1 6 6 C 1.54882 * 102.74915 * 322.05893 * 5 4 2 7 7 H 1.08995 * 110.48799 * 279.25983 * 6 5 4 8 8 C 1.53000 * 110.48718 * 156.75258 * 6 5 4 9 9 C 1.53872 * 110.03341 * 238.60342 * 2 1 3 10 10 N 1.46905 * 110.03017 * 121.38505 * 9 2 1 11 11 C 1.46900 * 110.99876 * 283.49166 * 10 9 2 12 12 C 1.52997 * 109.47117 * 174.85128 * 11 10 9 13 13 O 1.42908 * 109.46861 * 65.00209 * 12 11 10 14 14 C 1.42902 * 113.99735 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47009 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00119 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99903 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99808 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99967 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47472 * 89.99746 * 19 17 15 21 21 H 1.48501 * 109.46933 * 209.99437 * 19 17 15 22 22 H 1.48498 * 109.47248 * 329.99296 * 19 17 15 23 23 H 1.09004 * 109.47070 * 300.70750 * 1 2 3 24 24 H 1.08994 * 109.46662 * 60.70447 * 1 2 3 25 25 H 1.08997 * 109.47381 * 180.70318 * 1 2 3 26 26 H 1.09004 * 110.48772 * 261.62199 * 4 2 1 27 27 H 1.09001 * 110.48902 * 24.13371 * 4 2 1 28 28 H 1.09009 * 110.75413 * 80.37353 * 5 4 2 29 29 H 1.09002 * 110.75525 * 203.74259 * 5 4 2 30 30 H 1.08999 * 109.47366 * 66.24539 * 8 6 5 31 31 H 1.08998 * 109.47171 * 186.25006 * 8 6 5 32 32 H 1.09006 * 109.47067 * 306.25293 * 8 6 5 33 33 H 1.08990 * 110.03243 * 359.95138 * 9 2 1 34 34 H 1.00900 * 110.99789 * 159.54397 * 10 9 2 35 35 H 1.09001 * 109.47179 * 294.85523 * 11 10 9 36 36 H 1.08998 * 109.47006 * 54.85036 * 11 10 9 37 37 H 1.08998 * 109.46993 * 184.99914 * 12 11 10 38 38 H 1.08999 * 109.47408 * 305.00588 * 12 11 10 39 39 H 1.08996 * 109.47145 * 300.00152 * 14 13 12 40 40 H 1.09010 * 109.46778 * 60.00078 * 14 13 12 41 41 H 0.96995 * 119.99377 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0584 -0.7549 1.2373 5 6 3.3144 -1.4994 0.7203 6 6 2.8891 -1.9399 -0.7024 7 1 2.2794 -2.8422 -0.6561 8 6 4.1197 -2.1713 -1.5816 9 6 2.0571 -0.7531 -1.2340 10 7 2.9048 0.1346 -2.0411 11 6 2.0896 1.0796 -2.8160 12 6 3.0053 2.0673 -3.5417 13 8 3.7920 1.3664 -4.5072 14 6 4.6862 2.2017 -5.2452 15 6 5.4613 1.3628 -6.2283 16 1 5.2880 0.2983 -6.2842 17 6 6.3909 1.9544 -7.0571 18 7 7.0669 1.2223 -7.9154 19 14 6.6901 3.7957 -6.9608 20 1 7.7629 4.0720 -5.9720 21 1 7.1045 4.3003 -8.2946 22 1 5.4407 4.4789 -6.5395 23 1 -0.3633 0.5248 0.8836 24 1 -0.3632 0.5028 -0.8962 25 1 -0.3634 -1.0275 0.0126 26 1 2.3289 -0.0526 2.0259 27 1 1.3136 -1.4641 1.5984 28 1 4.1713 -0.8271 0.6765 29 1 3.5335 -2.3663 1.3437 30 1 4.6823 -3.0243 -1.2020 31 1 3.8026 -2.3716 -2.6050 32 1 4.7510 -1.2829 -1.5640 33 1 1.2230 -1.1193 -1.8323 34 1 3.5136 -0.3973 -2.6448 35 1 1.4944 0.5318 -3.5466 36 1 1.4275 1.6248 -2.1434 37 1 2.4002 2.8216 -4.0445 38 1 3.6629 2.5511 -2.8195 39 1 4.1157 2.9586 -5.7834 40 1 5.3786 2.6888 -4.5584 41 1 7.7211 1.6385 -8.4981 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378859165.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:37:37 Heat of formation + Delta-G solvation = -87.330401 kcal Electronic energy + Delta-G solvation = -17866.700138 eV Core-core repulsion = 15165.806382 eV Total energy + Delta-G solvation = -2700.893756 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.34312 -38.68939 -35.49729 -34.68617 -33.57566 -31.02136 -29.77925 -28.67119 -26.09275 -24.64053 -24.00098 -22.79278 -21.21596 -19.82103 -19.06270 -17.57611 -17.17072 -16.66585 -16.49170 -16.22566 -15.76953 -14.93022 -14.83560 -14.51761 -14.34649 -13.91590 -13.87186 -13.56422 -13.19069 -13.13450 -12.79184 -12.56947 -12.51332 -12.46993 -11.87024 -11.78948 -11.64075 -11.53629 -11.39016 -11.38595 -11.35104 -11.21731 -10.92747 -10.35563 -9.29553 -8.38066 -6.45834 1.33028 1.35808 1.46645 2.28865 2.94784 3.09755 3.24674 3.63239 3.70065 4.01787 4.20470 4.28761 4.36744 4.40377 4.50749 4.53307 4.60928 4.62254 4.67370 4.68168 4.76595 4.86389 4.88699 4.92488 4.97105 5.02923 5.05909 5.18863 5.21469 5.33009 5.34053 5.37468 5.43159 5.48552 5.64105 5.92831 6.21492 6.47729 6.57923 6.74006 7.18782 8.79054 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.035250 B = 0.004693 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.138156 B = 5965.181176 C = 6382.381126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 H 0.069 0.931 4 C -0.112 4.112 5 C -0.112 4.112 6 C -0.092 4.092 7 H 0.084 0.916 8 C -0.149 4.149 9 C 0.084 3.916 10 N -0.690 5.690 11 C 0.071 3.929 12 C 0.053 3.947 13 O -0.406 6.406 14 C 0.181 3.819 15 C -0.545 4.545 16 H 0.030 0.970 17 C 0.014 3.986 18 N -0.942 5.942 19 Si 0.955 3.045 20 H -0.260 1.260 21 H -0.273 1.273 22 H -0.247 1.247 23 H 0.065 0.935 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.054 0.946 33 H 0.035 0.965 34 H 0.345 0.655 35 H 0.025 0.975 36 H 0.102 0.898 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.011 0.989 40 H 0.009 0.991 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.414 -1.302 19.020 22.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 H 0.088 0.912 4 C -0.150 4.150 5 C -0.149 4.149 6 C -0.110 4.110 7 H 0.102 0.898 8 C -0.207 4.207 9 C -0.025 4.025 10 N -0.324 5.324 11 C -0.058 4.058 12 C -0.024 4.024 13 O -0.326 6.326 14 C 0.106 3.894 15 C -0.582 4.582 16 H 0.049 0.951 17 C -0.184 4.184 18 N -0.581 5.581 19 Si 0.776 3.224 20 H -0.184 1.184 21 H -0.198 1.198 22 H -0.170 1.170 23 H 0.084 0.916 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.166 0.834 35 H 0.043 0.957 36 H 0.120 0.880 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.028 0.972 40 H 0.027 0.973 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.191 -1.063 19.349 22.894 hybrid contribution 0.165 0.109 -1.315 1.330 sum -12.026 -0.953 18.034 21.697 Atomic orbital electron populations 1.21873 0.94239 1.02002 1.01810 1.21805 0.95608 0.99624 0.93666 0.91220 1.22376 0.97071 0.98942 0.96581 1.22480 0.97930 0.99876 0.94656 1.22076 0.96082 0.97014 0.95867 0.89811 1.21754 0.98212 1.01906 0.98806 1.22342 0.93636 0.92196 0.94359 1.60758 1.21528 1.21564 1.28591 1.21918 0.94275 0.94651 0.94938 1.22693 0.93874 0.95186 0.90674 1.87818 1.55219 1.36754 1.52761 1.20284 0.88255 0.90724 0.90164 1.21154 1.21859 0.95459 1.19771 0.95121 1.25818 0.94352 1.04426 0.93772 1.70031 1.25978 1.38630 1.23498 0.85614 0.80078 0.78067 0.78615 1.18445 1.19760 1.17017 0.91568 0.93329 0.92293 0.91290 0.90569 0.92360 0.90660 0.91544 0.94098 0.92669 0.94700 0.83378 0.95681 0.88001 0.92609 0.93035 0.97157 0.97348 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.84 71.98 0.64 -1.63 16 2 C -0.09 -1.71 2.72 -10.07 -0.03 -1.74 16 3 H 0.07 1.55 7.57 -2.39 -0.02 1.53 16 4 C -0.11 -1.87 6.36 31.67 0.20 -1.67 16 5 C -0.11 -2.12 6.33 31.88 0.20 -1.92 16 6 C -0.09 -1.98 3.42 -9.68 -0.03 -2.01 16 7 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 8 C -0.15 -3.77 7.90 71.98 0.57 -3.20 16 9 C 0.08 1.99 2.80 45.68 0.13 2.12 16 10 N -0.69 -20.29 5.69 -487.65 -2.77 -23.06 16 11 C 0.07 2.08 5.90 86.30 0.51 2.59 16 12 C 0.05 1.84 6.28 71.98 0.45 2.29 16 13 O -0.41 -19.05 9.94 -148.98 -1.48 -20.53 16 14 C 0.18 9.27 4.76 71.24 0.34 9.61 16 15 C -0.54 -33.55 9.99 25.60 0.26 -33.29 16 16 H 0.03 2.12 8.06 -2.91 -0.02 2.09 16 17 C 0.01 0.85 5.47 84.65 0.46 1.32 16 18 N -0.94 -59.69 13.96 21.45 0.30 -59.39 16 19 Si 0.96 43.83 27.47 68.60 1.88 45.72 16 20 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.25 -10.47 6.54 99.48 0.65 -9.82 16 23 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 24 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.08 1.07 7.84 -2.39 -0.02 1.05 16 28 H 0.06 1.28 8.03 -2.38 -0.02 1.27 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.04 1.12 7.74 -2.39 -0.02 1.11 16 32 H 0.05 1.59 7.06 -2.38 -0.02 1.58 16 33 H 0.04 0.85 7.56 -2.39 -0.02 0.83 16 34 H 0.34 11.79 5.58 -89.69 -0.50 11.29 16 35 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.10 2.41 7.39 -2.39 -0.02 2.39 16 37 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.01 0.52 7.20 -2.39 -0.02 0.51 16 40 H 0.01 0.43 7.57 -2.38 -0.02 0.41 16 41 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -67.46 319.88 2.04 -65.42 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: 0.41 Total: 19.39 kcal Atomic # 6 Polarization: -31.24 SS G_CDS: 3.70 Total: -27.55 kcal Atomic # 7 Polarization: -79.98 SS G_CDS: -2.48 Total: -82.45 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -1.48 Total: -20.53 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.88 Total: 45.72 kcal Total: -67.46 2.04 -65.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378859165.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.912 kcal (2) G-P(sol) polarization free energy of solvation -67.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds