Wall clock time and date at job start Mon Mar 30 2020 04:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47032 * 2 1 4 4 N 1.46500 * 109.47573 * 119.99920 * 2 1 3 5 5 C 1.36940 * 120.00058 * 294.97070 * 4 2 1 6 6 H 1.08002 * 120.00058 * 37.47009 * 5 4 2 7 7 C 1.38815 * 119.99952 * 217.47041 * 5 4 2 8 8 N 1.31618 * 119.99434 * 20.84962 * 7 5 4 9 9 Si 1.86795 * 120.00081 * 200.85011 * 7 5 4 10 10 H 1.48503 * 109.46912 * 59.99623 * 9 7 5 11 11 H 1.48488 * 109.47148 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46994 * 299.99936 * 9 7 5 13 13 C 1.46496 * 120.00090 * 114.96507 * 4 2 1 14 14 C 1.52999 * 109.47167 * 270.00523 * 13 4 2 15 15 H 1.09006 * 109.47270 * 54.99871 * 14 13 4 16 16 C 1.52994 * 109.47327 * 294.99820 * 14 13 4 17 17 C 1.53002 * 109.47517 * 180.02562 * 16 14 13 18 18 C 1.52993 * 109.47184 * 59.99654 * 17 16 14 19 19 C 1.53002 * 109.47525 * 300.00281 * 18 17 16 20 20 H 1.09001 * 109.47259 * 180.02562 * 19 18 17 21 21 O 1.42901 * 109.46882 * 300.00207 * 19 18 17 22 22 C 1.52999 * 109.46929 * 60.00006 * 19 18 17 23 23 H 1.09002 * 109.46712 * 303.37576 * 1 2 3 24 24 H 1.08992 * 109.47493 * 63.38015 * 1 2 3 25 25 H 1.09003 * 109.47198 * 183.38016 * 1 2 3 26 26 H 1.08995 * 109.46974 * 240.00155 * 2 1 3 27 27 H 1.09000 * 109.47280 * 181.57408 * 3 2 1 28 28 H 1.08995 * 109.47463 * 301.57799 * 3 2 1 29 29 H 1.09004 * 109.47162 * 61.57611 * 3 2 1 30 30 H 0.97006 * 119.99139 * 180.02562 * 8 7 5 31 31 H 1.08993 * 109.47392 * 150.00143 * 13 4 2 32 32 H 1.08998 * 109.46995 * 30.00308 * 13 4 2 33 33 H 1.09006 * 109.46987 * 300.00224 * 16 14 13 34 34 H 1.08996 * 109.47320 * 59.99718 * 16 14 13 35 35 H 1.08998 * 109.47151 * 179.97438 * 17 16 14 36 36 H 1.09000 * 109.46483 * 299.99819 * 17 16 14 37 37 H 1.09005 * 109.47286 * 180.02562 * 18 17 16 38 38 H 1.09000 * 109.47275 * 60.00651 * 18 17 16 39 39 H 0.96701 * 113.99967 * 299.99197 * 21 19 18 40 40 H 1.08997 * 109.47566 * 60.00148 * 22 19 18 41 41 H 1.08998 * 109.47484 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.7747 -0.1657 2.4373 6 1 0.8303 0.3155 2.6441 7 6 2.7416 -0.2523 3.4295 8 7 4.0020 -0.4478 3.1048 9 14 2.2539 -0.0914 5.2255 10 1 1.2858 -1.1625 5.5733 11 1 3.4618 -0.2186 6.0797 12 1 1.6262 1.2354 5.4510 13 6 2.7675 -1.9427 1.0645 14 6 1.7954 -3.1238 1.0918 15 1 1.0369 -2.9880 0.3208 16 6 1.1211 -3.1979 2.4631 17 6 0.1494 -4.3794 2.4906 18 6 0.9166 -5.6769 2.2288 19 6 1.5910 -5.6029 0.8574 20 1 2.1372 -6.5275 0.6708 21 8 0.5965 -5.4254 -0.1533 22 6 2.5627 -4.4215 0.8300 23 1 -0.3633 0.5654 0.8582 24 1 -0.3634 0.4604 -0.9186 25 1 -0.3634 -1.0259 0.0606 26 1 1.8933 -0.5138 -0.8900 27 1 3.1296 1.4427 -0.0282 28 1 1.6538 1.9645 -0.8754 29 1 1.6999 1.9481 0.9038 30 1 4.6776 -0.5086 3.7982 31 1 3.4723 -2.0330 1.8910 32 1 3.3126 -1.9424 0.1206 33 1 1.8796 -3.3337 3.2341 34 1 0.5748 -2.2733 2.6498 35 1 -0.3307 -4.4324 3.4678 36 1 -0.6091 -4.2439 1.7196 37 1 0.2243 -6.5186 2.2480 38 1 1.6751 -5.8124 2.9998 39 1 -0.0549 -6.1389 -0.1939 40 1 3.3212 -4.5568 1.6010 41 1 3.0428 -4.3684 -0.1471 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380072243.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:01 Heat of formation + Delta-G solvation = -59.051260 kcal Electronic energy + Delta-G solvation = -19183.522061 eV Core-core repulsion = 16483.854581 eV Total energy + Delta-G solvation = -2699.667480 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.81855 -36.49549 -34.51695 -32.29898 -31.22251 -29.49702 -28.45447 -26.06817 -25.40960 -22.97571 -21.83713 -20.48225 -19.43790 -18.97601 -16.45717 -16.14879 -15.25048 -14.71166 -14.36359 -14.08412 -13.77020 -13.29831 -12.94772 -12.65043 -12.38468 -12.08518 -11.81622 -11.51130 -11.39472 -11.21400 -11.14605 -10.87825 -10.71135 -10.60076 -10.38424 -10.28511 -10.17483 -9.93925 -9.80782 -9.55508 -9.33990 -9.16824 -9.10753 -8.32122 -6.39097 -5.65322 -3.21782 3.40827 3.46779 3.49431 4.55752 4.56728 5.14076 5.16339 5.27099 5.46464 5.52356 5.81031 5.86957 5.93143 6.03047 6.07793 6.19559 6.23396 6.28164 6.34575 6.45370 6.52604 6.54684 6.61239 6.74200 6.82034 6.83425 6.87800 6.92631 7.12301 7.23641 7.29139 7.33175 7.46037 7.51899 7.88565 7.91152 7.96004 8.65766 9.33784 9.97339 10.56961 11.33470 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019535 B = 0.010134 C = 0.007951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.948258 B = 2762.344028 C = 3520.823215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.163 3.837 3 C -0.145 4.145 4 N -0.578 5.578 5 C -0.239 4.239 6 H 0.056 0.944 7 C 0.013 3.987 8 N -0.888 5.888 9 Si 0.884 3.116 10 H -0.282 1.282 11 H -0.292 1.292 12 H -0.283 1.283 13 C 0.150 3.850 14 C -0.093 4.093 15 H 0.059 0.941 16 C -0.098 4.098 17 C -0.116 4.116 18 C -0.149 4.149 19 C 0.108 3.892 20 H 0.042 0.958 21 O -0.560 6.560 22 C -0.106 4.106 23 H 0.049 0.951 24 H 0.032 0.968 25 H 0.045 0.955 26 H 0.043 0.957 27 H 0.046 0.954 28 H 0.027 0.973 29 H 0.056 0.944 30 H 0.252 0.748 31 H 0.093 0.907 32 H 0.017 0.983 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.047 0.953 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.066 0.934 39 H 0.366 0.634 40 H 0.069 0.931 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.912 -8.497 -3.809 10.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.056 3.944 3 C -0.204 4.204 4 N -0.298 5.298 5 C -0.370 4.370 6 H 0.074 0.926 7 C -0.186 4.186 8 N -0.531 5.531 9 Si 0.714 3.286 10 H -0.208 1.208 11 H -0.219 1.219 12 H -0.210 1.210 13 C 0.024 3.976 14 C -0.114 4.114 15 H 0.077 0.923 16 C -0.136 4.136 17 C -0.154 4.154 18 C -0.186 4.186 19 C 0.049 3.951 20 H 0.060 0.940 21 O -0.364 6.364 22 C -0.145 4.145 23 H 0.069 0.931 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.111 0.889 32 H 0.035 0.965 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.211 0.789 40 H 0.088 0.912 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.386 -7.928 -3.811 9.829 hybrid contribution -0.494 -0.564 1.234 1.444 sum -4.880 -8.492 -2.577 10.128 Atomic orbital electron populations 1.22202 0.99018 1.00621 0.99442 1.20374 0.91908 0.92068 0.90021 1.22043 1.00705 0.98051 0.99558 1.43831 1.64222 1.20820 1.00955 1.18770 0.96877 1.33937 0.87367 0.92644 1.25070 0.94541 1.00843 0.98191 1.69984 0.99303 1.52204 1.31651 0.86656 0.77421 0.78251 0.86239 1.20845 1.21850 1.20975 1.21001 0.93173 0.83305 1.00117 1.21657 0.98728 0.94185 0.96849 0.92264 1.21446 0.97717 0.97445 0.96981 1.21519 0.98749 0.94987 1.00112 1.22223 0.99977 0.98366 0.98069 1.21811 0.89051 0.97689 0.86550 0.94025 1.86602 1.42876 1.50169 1.56731 1.21582 0.96761 0.94739 1.01371 0.93140 0.94850 0.93560 0.93873 0.93462 0.95381 0.92456 0.93827 0.88904 0.96467 0.93358 0.89857 0.93383 0.92217 0.93038 0.91517 0.78885 0.91211 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.19 37.16 0.34 -2.63 16 2 C 0.16 3.51 3.37 -67.93 -0.23 3.28 16 3 C -0.14 -3.02 9.11 37.16 0.34 -2.68 16 4 N -0.58 -13.93 2.24 -165.67 -0.37 -14.30 16 5 C -0.24 -6.24 5.98 -15.06 -0.09 -6.33 16 6 H 0.06 1.48 7.14 -52.49 -0.37 1.11 16 7 C 0.01 0.35 4.97 -17.43 -0.09 0.27 16 8 N -0.89 -25.05 11.43 55.49 0.63 -24.42 16 9 Si 0.88 21.37 29.60 -169.99 -5.03 16.34 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.15 3.49 4.78 -4.04 -0.02 3.47 16 14 C -0.09 -1.86 2.25 -90.62 -0.20 -2.07 16 15 H 0.06 1.26 7.68 -51.93 -0.40 0.86 16 16 C -0.10 -1.98 4.76 -26.73 -0.13 -2.11 16 17 C -0.12 -1.92 5.78 -26.73 -0.15 -2.07 16 18 C -0.15 -2.09 5.64 -26.73 -0.15 -2.24 16 19 C 0.11 1.56 3.77 -26.73 -0.10 1.46 16 20 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 21 O -0.56 -8.18 11.97 -35.23 -0.42 -8.60 16 22 C -0.11 -1.83 4.94 -26.73 -0.13 -1.96 16 23 H 0.05 1.01 7.32 -51.93 -0.38 0.63 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.04 0.90 7.77 -51.93 -0.40 0.50 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 1.28 7.50 -51.93 -0.39 0.89 16 30 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.09 2.43 5.48 -51.93 -0.28 2.14 16 32 H 0.02 0.39 7.88 -51.93 -0.41 -0.02 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 1.90 6.35 -51.93 -0.33 1.57 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.99 7.68 -51.93 -0.40 0.59 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.37 3.67 9.08 45.56 0.41 4.08 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 312.87 15.07 4.71 4.71 Total: -1.00 -28.22 312.87 -7.83 -36.05 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.74 Total: 3.83 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -0.61 Total: -13.62 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.26 Total: -38.72 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: -0.42 Total: -8.60 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.22 -7.83 -36.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380072243.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.998 kcal (2) G-P(sol) polarization free energy of solvation -28.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds