Wall clock time and date at job start Mon Mar 30 2020 05:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 110.05458 * 2 1 4 4 C 1.54271 * 110.02850 * 121.41216 * 2 1 3 5 5 C 1.54886 * 104.19166 * 142.89576 * 4 2 1 6 6 C 1.54889 * 102.75121 * 322.05339 * 5 4 2 7 7 C 1.53870 * 110.03195 * 238.57776 * 2 1 3 8 8 H 1.08998 * 110.03223 * 121.38517 * 7 2 1 9 9 C 1.53000 * 110.03428 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47338 * 174.99777 * 9 7 2 11 11 C 1.46896 * 110.99948 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47035 * 180.02562 * 11 10 9 13 13 O 1.42905 * 109.47079 * 64.99813 * 12 11 10 14 14 C 1.42899 * 113.99778 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47163 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00089 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00281 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99721 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00202 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46881 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46827 * 119.99902 * 19 17 15 22 22 H 1.48498 * 109.47252 * 240.00324 * 19 17 15 23 23 H 1.08999 * 109.47395 * 181.42112 * 1 2 3 24 24 H 1.09001 * 109.47037 * 301.42183 * 1 2 3 25 25 H 1.09000 * 109.46965 * 61.41949 * 1 2 3 26 26 H 1.08996 * 110.48402 * 261.57092 * 4 2 1 27 27 H 1.08994 * 110.48714 * 24.08600 * 4 2 1 28 28 H 1.09003 * 110.75627 * 80.37158 * 5 4 2 29 29 H 1.09004 * 110.75655 * 203.55814 * 5 4 2 30 30 H 1.08992 * 110.49003 * 279.26460 * 6 5 4 31 31 H 1.08999 * 110.48383 * 156.61763 * 6 5 4 32 32 H 1.09004 * 109.47457 * 54.99874 * 9 7 2 33 33 H 1.09001 * 109.47125 * 295.00072 * 9 7 2 34 34 H 1.00899 * 110.99761 * 56.04899 * 10 9 7 35 35 H 1.08997 * 109.47137 * 60.00445 * 11 10 9 36 36 H 1.09005 * 109.47283 * 299.99974 * 11 10 9 37 37 H 1.09004 * 109.46930 * 305.00039 * 12 11 10 38 38 H 1.09000 * 109.47312 * 184.99983 * 12 11 10 39 39 H 1.08997 * 109.47442 * 300.00036 * 14 13 12 40 40 H 1.08997 * 109.47171 * 60.00232 * 14 13 12 41 41 H 0.97007 * 119.99648 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7554 1.2370 5 6 3.3136 -1.5007 0.7193 6 6 2.8874 -1.9408 -0.7033 7 6 2.0571 -0.7537 -1.2336 8 1 2.6861 -0.0953 -1.8328 9 6 0.8862 -1.2665 -2.0743 10 7 1.3996 -1.8783 -3.3073 11 6 0.3009 -2.3837 -4.1412 12 6 0.8736 -3.0127 -5.4129 13 8 1.6471 -4.1638 -5.0683 14 6 2.2307 -4.8291 -6.1904 15 6 3.0188 -6.0216 -5.7132 16 1 3.0688 -6.2490 -4.6586 17 6 3.6753 -6.8230 -6.6230 18 7 3.6141 -6.5464 -7.9073 19 14 4.6529 -8.3008 -6.0314 20 1 4.5647 -8.3925 -4.5519 21 1 4.0967 -9.5370 -6.6376 22 1 6.0740 -8.1478 -6.4345 23 1 -0.3634 -1.0273 0.0255 24 1 -0.3633 0.5358 0.8770 25 1 -0.3633 0.4916 -0.9024 26 1 2.3297 -0.0535 2.0255 27 1 1.3133 -1.4642 1.5981 28 1 4.1710 -0.8290 0.6753 29 1 3.5344 -2.3660 1.3444 30 1 2.2772 -2.8426 -0.6569 31 1 3.7637 -2.1038 -1.3307 32 1 0.2290 -0.4347 -2.3279 33 1 0.3282 -2.0099 -1.5049 34 1 2.0615 -2.6108 -3.0991 35 1 -0.3606 -1.5599 -4.4090 36 1 -0.2608 -3.1350 -3.5859 37 1 1.5082 -2.2878 -5.9228 38 1 0.0570 -3.3077 -6.0719 39 1 1.4425 -5.1617 -6.8658 40 1 2.8935 -4.1417 -6.7159 41 1 4.0757 -7.1104 -8.5474 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385353665.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:18 Heat of formation + Delta-G solvation = -77.392298 kcal Electronic energy + Delta-G solvation = -17474.490758 eV Core-core repulsion = 14774.027950 eV Total energy + Delta-G solvation = -2700.462808 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -39.23106 -37.02523 -34.98879 -32.69023 -31.55220 -30.39020 -27.86448 -26.50661 -25.10975 -23.47774 -22.34261 -21.36568 -20.69001 -18.58168 -16.54878 -16.37370 -15.75777 -15.34087 -15.07310 -14.72108 -14.37194 -14.00488 -13.70098 -13.40001 -13.05346 -12.78682 -12.40341 -12.25358 -11.86726 -11.56988 -11.29253 -11.07729 -10.85677 -10.84662 -10.77437 -10.74185 -10.68044 -10.52851 -10.36702 -10.26502 -9.96200 -9.07892 -8.81325 -8.15575 -8.12128 -6.09988 -4.11627 3.29542 3.35926 3.42165 4.31938 4.35997 4.49328 4.57874 4.75160 4.97396 5.18601 5.26597 5.26772 5.29041 5.37005 5.42488 5.52249 5.55901 5.59860 5.70642 5.76042 5.78120 5.83912 5.88004 5.96261 6.06577 6.11492 6.13817 6.22349 6.29875 6.31694 6.38095 6.46097 7.13327 7.31160 7.45775 7.73389 7.80351 8.16754 8.59596 9.01979 9.53291 11.01630 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028031 B = 0.004360 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.650773 B = 6420.415432 C = 7223.157866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 H 0.069 0.931 4 C -0.120 4.120 5 C -0.125 4.125 6 C -0.123 4.123 7 C -0.087 4.087 8 H 0.079 0.921 9 C 0.064 3.936 10 N -0.690 5.690 11 C 0.066 3.934 12 C 0.062 3.938 13 O -0.399 6.399 14 C 0.196 3.804 15 C -0.514 4.514 16 H 0.066 0.934 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.907 3.093 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.282 1.282 23 H 0.057 0.943 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.028 0.972 34 H 0.354 0.646 35 H 0.073 0.927 36 H 0.032 0.968 37 H 0.046 0.954 38 H 0.040 0.960 39 H 0.004 0.996 40 H 0.006 0.994 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.167 12.718 15.078 20.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 H 0.088 0.912 4 C -0.158 4.158 5 C -0.162 4.162 6 C -0.161 4.161 7 C -0.106 4.106 8 H 0.098 0.902 9 C -0.066 4.066 10 N -0.323 5.323 11 C -0.063 4.063 12 C -0.016 4.016 13 O -0.319 6.319 14 C 0.122 3.878 15 C -0.552 4.552 16 H 0.084 0.916 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.734 3.266 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.208 1.208 23 H 0.077 0.923 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.174 0.826 35 H 0.091 0.909 36 H 0.050 0.950 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.022 0.978 40 H 0.024 0.976 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.041 13.177 14.743 20.406 hybrid contribution 0.185 -1.476 0.261 1.510 sum -4.856 11.701 15.004 19.637 Atomic orbital electron populations 1.21986 0.95373 1.01913 1.01322 1.21749 0.95588 0.99151 0.94521 0.91203 1.22452 0.97505 0.98840 0.96982 1.22473 0.97482 0.99738 0.96552 1.22457 0.99969 0.97734 0.95907 1.21811 0.96555 0.96997 0.95205 0.90216 1.22211 0.96149 0.98197 0.89997 1.60512 1.16331 1.37704 1.17752 1.21931 0.93014 0.97111 0.94290 1.22302 0.94811 0.89268 0.95229 1.87785 1.67737 1.40549 1.35872 1.20178 0.92031 0.91490 0.84078 1.21094 1.30155 1.09601 0.94336 0.91589 1.24948 0.96643 0.98223 0.94695 1.69978 1.43587 1.39185 1.01009 0.86297 0.79487 0.81797 0.79005 1.19515 1.20869 1.20812 0.92349 0.93229 0.92320 0.92110 0.91704 0.91658 0.91784 0.91704 0.91099 0.91203 0.95394 0.82585 0.90853 0.94976 0.93584 0.94236 0.97846 0.97608 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 7.88 37.16 0.29 -1.00 16 2 C -0.09 -0.85 3.50 -89.50 -0.31 -1.17 16 3 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 4 C -0.12 -1.08 6.36 -25.07 -0.16 -1.24 16 5 C -0.12 -1.22 6.91 -24.74 -0.17 -1.39 16 6 C -0.12 -1.43 5.56 -25.07 -0.14 -1.57 16 7 C -0.09 -0.98 3.15 -89.50 -0.28 -1.26 16 8 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 9 C 0.06 0.79 3.85 -3.82 -0.01 0.77 16 10 N -0.69 -10.65 6.50 -113.78 -0.74 -11.39 16 11 C 0.07 1.04 6.11 -3.82 -0.02 1.01 16 12 C 0.06 1.19 6.28 37.16 0.23 1.42 16 13 O -0.40 -9.71 9.85 -35.23 -0.35 -10.06 16 14 C 0.20 5.47 5.69 36.00 0.20 5.68 16 15 C -0.51 -15.25 9.43 -34.44 -0.32 -15.57 16 16 H 0.07 1.94 7.81 -52.48 -0.41 1.53 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 19 Si 0.91 21.95 29.54 -169.99 -5.02 16.93 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H 0.06 0.53 6.86 -51.93 -0.36 0.18 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.50 6.61 -51.93 -0.34 0.16 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.58 7.83 -51.93 -0.41 0.18 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.81 7.76 -51.93 -0.40 0.40 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.81 6.42 -51.93 -0.33 0.48 16 33 H 0.03 0.35 6.91 -51.93 -0.36 -0.01 16 34 H 0.35 6.09 7.52 -39.29 -0.30 5.79 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 40 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 322.56 15.07 4.86 4.86 Total: -1.00 -30.40 322.56 -8.84 -39.24 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -7.54 Total: -0.41 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -0.79 Total: -12.79 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.00 Total: -37.78 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -0.35 Total: -10.06 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.40 -8.84 -39.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385353665.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.148 kcal (2) G-P(sol) polarization free energy of solvation -30.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds