Wall clock time and date at job start Mon Mar 30 2020 05:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 110.05458 * 2 1 4 4 C 1.54271 * 110.02850 * 121.41216 * 2 1 3 5 5 C 1.54886 * 104.19166 * 142.89576 * 4 2 1 6 6 C 1.54889 * 102.75121 * 322.05339 * 5 4 2 7 7 C 1.53870 * 110.03195 * 238.57776 * 2 1 3 8 8 H 1.08998 * 110.03223 * 121.38517 * 7 2 1 9 9 C 1.53000 * 110.03428 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47338 * 174.99777 * 9 7 2 11 11 C 1.46896 * 110.99948 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47035 * 180.02562 * 11 10 9 13 13 O 1.42905 * 109.47079 * 64.99813 * 12 11 10 14 14 C 1.42899 * 113.99778 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.47163 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00089 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00281 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99721 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00202 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46881 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46827 * 119.99902 * 19 17 15 22 22 H 1.48498 * 109.47252 * 240.00324 * 19 17 15 23 23 H 1.08999 * 109.47395 * 181.42112 * 1 2 3 24 24 H 1.09001 * 109.47037 * 301.42183 * 1 2 3 25 25 H 1.09000 * 109.46965 * 61.41949 * 1 2 3 26 26 H 1.08996 * 110.48402 * 261.57092 * 4 2 1 27 27 H 1.08994 * 110.48714 * 24.08600 * 4 2 1 28 28 H 1.09003 * 110.75627 * 80.37158 * 5 4 2 29 29 H 1.09004 * 110.75655 * 203.55814 * 5 4 2 30 30 H 1.08992 * 110.49003 * 279.26460 * 6 5 4 31 31 H 1.08999 * 110.48383 * 156.61763 * 6 5 4 32 32 H 1.09004 * 109.47457 * 54.99874 * 9 7 2 33 33 H 1.09001 * 109.47125 * 295.00072 * 9 7 2 34 34 H 1.00899 * 110.99761 * 56.04899 * 10 9 7 35 35 H 1.08997 * 109.47137 * 60.00445 * 11 10 9 36 36 H 1.09005 * 109.47283 * 299.99974 * 11 10 9 37 37 H 1.09004 * 109.46930 * 305.00039 * 12 11 10 38 38 H 1.09000 * 109.47312 * 184.99983 * 12 11 10 39 39 H 1.08997 * 109.47442 * 300.00036 * 14 13 12 40 40 H 1.08997 * 109.47171 * 60.00232 * 14 13 12 41 41 H 0.97007 * 119.99648 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0584 -0.7554 1.2370 5 6 3.3136 -1.5007 0.7193 6 6 2.8874 -1.9408 -0.7033 7 6 2.0571 -0.7537 -1.2336 8 1 2.6861 -0.0953 -1.8328 9 6 0.8862 -1.2665 -2.0743 10 7 1.3996 -1.8783 -3.3073 11 6 0.3009 -2.3837 -4.1412 12 6 0.8736 -3.0127 -5.4129 13 8 1.6471 -4.1638 -5.0683 14 6 2.2307 -4.8291 -6.1904 15 6 3.0188 -6.0216 -5.7132 16 1 3.0688 -6.2490 -4.6586 17 6 3.6753 -6.8230 -6.6230 18 7 3.6141 -6.5464 -7.9073 19 14 4.6529 -8.3008 -6.0314 20 1 4.5647 -8.3925 -4.5519 21 1 4.0967 -9.5370 -6.6376 22 1 6.0740 -8.1478 -6.4345 23 1 -0.3634 -1.0273 0.0255 24 1 -0.3633 0.5358 0.8770 25 1 -0.3633 0.4916 -0.9024 26 1 2.3297 -0.0535 2.0255 27 1 1.3133 -1.4642 1.5981 28 1 4.1710 -0.8290 0.6753 29 1 3.5344 -2.3660 1.3444 30 1 2.2772 -2.8426 -0.6569 31 1 3.7637 -2.1038 -1.3307 32 1 0.2290 -0.4347 -2.3279 33 1 0.3282 -2.0099 -1.5049 34 1 2.0615 -2.6108 -3.0991 35 1 -0.3606 -1.5599 -4.4090 36 1 -0.2608 -3.1350 -3.5859 37 1 1.5082 -2.2878 -5.9228 38 1 0.0570 -3.3077 -6.0719 39 1 1.4425 -5.1617 -6.8658 40 1 2.8935 -4.1417 -6.7159 41 1 4.0757 -7.1104 -8.5474 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385353665.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:15 Heat of formation + Delta-G solvation = -96.577691 kcal Electronic energy + Delta-G solvation = -17475.322699 eV Core-core repulsion = 14774.027950 eV Total energy + Delta-G solvation = -2701.294749 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 3.24 seconds Orbital eigenvalues (eV) -40.12089 -38.76877 -36.34007 -34.86266 -32.38380 -31.57667 -29.56401 -28.16247 -25.89353 -24.58773 -24.45946 -22.76066 -21.53459 -19.46087 -18.63634 -17.67575 -17.21845 -16.91632 -16.38383 -16.22483 -15.74058 -15.28773 -15.06101 -14.52458 -14.23150 -14.13012 -13.65665 -13.25365 -13.22222 -13.02556 -12.94299 -12.69335 -12.53096 -12.32558 -11.92208 -11.88274 -11.63157 -11.52889 -11.43072 -11.29315 -11.26938 -11.13663 -10.88412 -10.24694 -9.33077 -8.33163 -6.45726 1.39445 1.41026 1.55573 2.33983 3.00790 3.18709 3.23768 3.67342 3.74737 3.86316 4.17285 4.31935 4.40089 4.43797 4.45647 4.54279 4.58682 4.62673 4.71311 4.73977 4.77695 4.84035 4.89425 4.94149 4.97212 5.04466 5.10708 5.14978 5.16914 5.27443 5.37286 5.42674 5.50679 5.53822 5.60611 5.94531 6.14477 6.41178 6.51987 6.80416 7.26371 8.79547 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028031 B = 0.004360 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.650773 B = 6420.415432 C = 7223.157866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 H 0.078 0.922 4 C -0.117 4.117 5 C -0.123 4.123 6 C -0.126 4.126 7 C -0.085 4.085 8 H 0.070 0.930 9 C 0.067 3.933 10 N -0.700 5.700 11 C 0.075 3.925 12 C 0.054 3.946 13 O -0.409 6.409 14 C 0.211 3.789 15 C -0.547 4.547 16 H 0.062 0.938 17 C 0.006 3.994 18 N -0.931 5.931 19 Si 0.984 3.016 20 H -0.264 1.264 21 H -0.271 1.271 22 H -0.271 1.271 23 H 0.051 0.949 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.083 0.917 33 H 0.028 0.972 34 H 0.341 0.659 35 H 0.104 0.896 36 H 0.031 0.969 37 H 0.042 0.958 38 H 0.049 0.951 39 H -0.015 1.015 40 H -0.015 1.015 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.312 12.950 16.534 21.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 H 0.097 0.903 4 C -0.154 4.154 5 C -0.160 4.160 6 C -0.164 4.164 7 C -0.104 4.104 8 H 0.088 0.912 9 C -0.061 4.061 10 N -0.332 5.332 11 C -0.054 4.054 12 C -0.024 4.024 13 O -0.329 6.329 14 C 0.136 3.864 15 C -0.585 4.585 16 H 0.080 0.920 17 C -0.192 4.192 18 N -0.570 5.570 19 Si 0.807 3.193 20 H -0.188 1.188 21 H -0.196 1.196 22 H -0.196 1.196 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.101 0.899 33 H 0.046 0.954 34 H 0.159 0.841 35 H 0.123 0.877 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.003 0.997 40 H 0.002 0.998 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.209 13.439 16.206 21.688 hybrid contribution 0.190 -1.471 -0.225 1.500 sum -5.019 11.968 15.982 20.587 Atomic orbital electron populations 1.21965 0.94642 1.01746 1.02070 1.21741 0.96169 0.99252 0.93504 0.90348 1.22446 0.96873 0.98977 0.97130 1.22472 0.98216 1.00120 0.95223 1.22441 0.99259 0.97577 0.97117 1.21790 0.95985 0.96729 0.95856 0.91199 1.22278 0.96696 0.98266 0.88874 1.60576 1.16228 1.37060 1.19352 1.21908 0.93083 0.97861 0.92596 1.22621 0.94453 0.87611 0.97669 1.87752 1.68321 1.42203 1.34663 1.19804 0.91054 0.91063 0.84525 1.21410 1.31670 1.10969 0.94460 0.92012 1.25970 0.97261 1.01325 0.94656 1.70082 1.44087 1.40542 1.02310 0.85125 0.77945 0.77504 0.78757 1.18815 1.19612 1.19625 0.92978 0.91896 0.92165 0.90555 0.91686 0.91145 0.91457 0.92944 0.92747 0.89860 0.95381 0.84133 0.87742 0.95112 0.93929 0.93290 0.99691 0.99768 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 7.88 71.98 0.57 -1.65 16 2 C -0.09 -1.47 3.50 -10.07 -0.04 -1.51 16 3 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 4 C -0.12 -1.86 6.36 31.67 0.20 -1.66 16 5 C -0.12 -2.27 6.91 31.88 0.22 -2.05 16 6 C -0.13 -2.94 5.56 31.67 0.18 -2.77 16 7 C -0.08 -1.84 3.15 -10.07 -0.03 -1.87 16 8 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 9 C 0.07 1.59 3.85 86.30 0.33 1.92 16 10 N -0.70 -21.39 6.50 -513.88 -3.34 -24.73 16 11 C 0.07 2.28 6.11 86.30 0.53 2.80 16 12 C 0.05 2.07 6.28 71.98 0.45 2.52 16 13 O -0.41 -20.39 9.85 -148.98 -1.47 -21.86 16 14 C 0.21 12.13 5.69 71.24 0.41 12.53 16 15 C -0.55 -33.12 9.43 25.60 0.24 -32.88 16 16 H 0.06 3.69 7.81 -2.91 -0.02 3.67 16 17 C 0.01 0.37 5.46 84.65 0.46 0.83 16 18 N -0.93 -56.65 13.29 21.45 0.28 -56.36 16 19 Si 0.98 44.78 29.54 68.60 2.03 46.80 16 20 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 H 0.05 0.85 6.86 -2.39 -0.02 0.84 16 24 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 25 H 0.06 0.89 6.61 -2.39 -0.02 0.87 16 26 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 1.04 7.83 -2.39 -0.02 1.02 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.05 1.33 7.76 -2.39 -0.02 1.31 16 31 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.76 6.42 -2.38 -0.02 1.74 16 33 H 0.03 0.68 6.91 -2.39 -0.02 0.66 16 34 H 0.34 11.95 7.52 -89.69 -0.67 11.28 16 35 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 39 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 40 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 41 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 Total: -1.00 -65.13 322.56 1.32 -63.81 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.30 Total: 16.12 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: 3.52 Total: -23.77 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -3.06 Total: -81.10 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -1.47 Total: -21.86 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -65.13 1.32 -63.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385353665.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.770 kcal (2) G-P(sol) polarization free energy of solvation -65.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.24 seconds