Wall clock time and date at job start Mon Mar 30 2020 05:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.01115 * 2 1 4 4 C 1.54262 * 110.03760 * 238.55526 * 2 1 3 5 5 C 1.54890 * 104.19881 * 217.10568 * 4 2 1 6 6 C 1.54892 * 102.74353 * 37.94194 * 5 4 2 7 7 C 1.53877 * 110.03068 * 121.38731 * 2 1 3 8 8 H 1.08998 * 110.03456 * 238.62231 * 7 2 1 9 9 C 1.53000 * 110.03253 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47141 * 185.00255 * 9 7 2 11 11 C 1.46904 * 111.00032 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47219 * 179.97438 * 11 10 9 13 13 O 1.42901 * 109.47091 * 64.99734 * 12 11 10 14 14 C 1.42905 * 113.99785 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.46972 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99819 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00046 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00192 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99979 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47297 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47261 * 60.00310 * 19 17 15 22 22 H 1.48500 * 109.47454 * 300.00304 * 19 17 15 23 23 H 1.08992 * 109.47438 * 298.61329 * 1 2 3 24 24 H 1.09008 * 109.46813 * 58.61509 * 1 2 3 25 25 H 1.08999 * 109.46951 * 178.60580 * 1 2 3 26 26 H 1.09004 * 110.48591 * 335.78387 * 4 2 1 27 27 H 1.09005 * 110.48592 * 98.29067 * 4 2 1 28 28 H 1.08994 * 110.75301 * 156.25759 * 5 4 2 29 29 H 1.09001 * 110.75588 * 279.62735 * 5 4 2 30 30 H 1.08999 * 110.48363 * 203.37827 * 6 5 4 31 31 H 1.08994 * 110.48795 * 80.73877 * 6 5 4 32 32 H 1.08998 * 109.47259 * 64.99179 * 9 7 2 33 33 H 1.09005 * 109.46840 * 305.00122 * 9 7 2 34 34 H 1.00896 * 111.00179 * 56.04210 * 10 9 7 35 35 H 1.09002 * 109.46932 * 59.99333 * 11 10 9 36 36 H 1.08994 * 109.46819 * 299.99957 * 11 10 9 37 37 H 1.09003 * 109.47090 * 304.99634 * 12 11 10 38 38 H 1.09002 * 109.47184 * 185.00003 * 12 11 10 39 39 H 1.09001 * 109.47112 * 60.00541 * 14 13 12 40 40 H 1.08993 * 109.47057 * 299.99974 * 14 13 12 41 41 H 0.97001 * 119.99934 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0586 -0.7560 -1.2364 5 6 3.3138 -1.5010 -0.7183 6 6 2.8874 -1.9402 0.7046 7 6 2.0571 -0.7529 1.2341 8 1 2.6859 -0.0942 1.8330 9 6 0.8861 -1.2664 2.0745 10 7 1.3993 -1.8774 3.3078 11 6 0.3005 -2.3823 4.1419 12 6 0.8730 -3.0105 5.4141 13 8 1.5102 -2.0005 6.1989 14 6 2.0812 -2.4844 7.4163 15 6 2.7232 -1.3412 8.1592 16 1 2.6973 -0.3447 7.7435 17 6 3.3426 -1.5672 9.3701 18 7 3.3737 -2.7805 9.8765 19 14 4.1378 -0.1500 10.2913 20 1 4.7313 -0.6528 11.5564 21 1 3.1113 0.8779 10.5999 22 1 5.2034 0.4516 9.4500 23 1 -0.3634 0.4921 0.9021 24 1 -0.3633 0.5352 -0.8774 25 1 -0.3633 -1.0274 -0.0250 26 1 1.3144 -1.4668 -1.5959 27 1 2.3276 -0.0546 -2.0263 28 1 3.5326 -2.3684 -1.3410 29 1 4.1711 -0.8293 -0.6746 30 1 3.7636 -2.1030 1.3321 31 1 2.2772 -2.8422 0.6586 32 1 0.3288 -2.0101 1.5050 33 1 0.2283 -0.4348 2.3274 34 1 1.9736 -1.2264 3.8221 35 1 -0.2612 -3.1337 3.5870 36 1 -0.3610 -1.5582 4.4091 37 1 1.6016 -3.7754 5.1454 38 1 0.0663 -3.4635 5.9904 39 1 2.8348 -3.2386 7.1895 40 1 1.2993 -2.9261 8.0339 41 1 2.9605 -3.5164 9.3983 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385353667.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:28 Heat of formation + Delta-G solvation = -80.202559 kcal Electronic energy + Delta-G solvation = -17413.885477 eV Core-core repulsion = 14713.300807 eV Total energy + Delta-G solvation = -2700.584670 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 4.50 seconds Orbital eigenvalues (eV) -39.22970 -37.18241 -35.11861 -32.95083 -31.55459 -30.41410 -27.79111 -26.16080 -25.11053 -23.45610 -22.52106 -21.41468 -20.80423 -18.71181 -17.00448 -16.38216 -15.86880 -15.39990 -15.16313 -14.63654 -14.20167 -13.89544 -13.73725 -13.65726 -13.10155 -12.72323 -12.41636 -12.35623 -11.89777 -11.60240 -11.32842 -11.23419 -11.05736 -10.87990 -10.80027 -10.70471 -10.65884 -10.58586 -10.29645 -10.14611 -10.07259 -8.85422 -8.63069 -8.24157 -8.16269 -6.46341 -4.14987 3.42956 3.45773 3.64588 4.25556 4.44646 4.48664 4.55529 4.71382 4.83171 5.13347 5.18822 5.28117 5.31794 5.36225 5.43212 5.47799 5.50759 5.55320 5.67084 5.70355 5.75141 5.80392 5.83633 5.91791 5.98328 6.04859 6.08996 6.16053 6.25084 6.29179 6.31131 6.43850 6.77839 7.14018 7.24477 7.65710 7.89053 8.18191 8.63167 8.81044 9.55770 10.93989 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031656 B = 0.003929 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.305037 B = 7124.693556 C = 7412.252789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 H 0.069 0.931 4 C -0.119 4.119 5 C -0.129 4.129 6 C -0.105 4.105 7 C -0.088 4.088 8 H 0.071 0.929 9 C 0.064 3.936 10 N -0.689 5.689 11 C 0.067 3.933 12 C 0.060 3.940 13 O -0.391 6.391 14 C 0.188 3.812 15 C -0.597 4.597 16 H 0.059 0.941 17 C 0.017 3.983 18 N -0.911 5.911 19 Si 1.079 2.921 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.286 1.286 23 H 0.057 0.943 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.030 0.970 34 H 0.354 0.646 35 H 0.074 0.926 36 H 0.033 0.967 37 H 0.046 0.954 38 H 0.039 0.961 39 H -0.004 1.004 40 H -0.006 1.006 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.731 2.924 -20.732 21.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 H 0.088 0.912 4 C -0.156 4.156 5 C -0.167 4.167 6 C -0.143 4.143 7 C -0.107 4.107 8 H 0.089 0.911 9 C -0.065 4.065 10 N -0.321 5.321 11 C -0.062 4.062 12 C -0.018 4.018 13 O -0.310 6.310 14 C 0.114 3.886 15 C -0.635 4.635 16 H 0.078 0.922 17 C -0.186 4.186 18 N -0.547 5.547 19 Si 0.906 3.094 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.212 1.212 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.048 0.952 34 H 0.173 0.827 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.014 0.986 40 H 0.011 0.989 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.773 2.890 -19.682 20.248 hybrid contribution -1.335 0.052 -0.972 1.652 sum -5.108 2.942 -20.654 21.479 Atomic orbital electron populations 1.21985 0.95349 1.01851 1.01395 1.21757 0.95613 0.99182 0.94568 0.91234 1.22436 0.97499 0.98795 0.96908 1.22539 0.97483 0.99654 0.97018 1.22273 0.99611 0.97561 0.94849 1.21795 0.96477 0.96928 0.95458 0.91054 1.22219 0.95857 0.96973 0.91460 1.60468 1.21459 1.43113 1.07077 1.21906 0.92812 0.98849 0.92646 1.22348 0.96191 0.92034 0.91250 1.87817 1.74183 1.33744 1.35270 1.20257 0.91495 0.96097 0.80783 1.21899 1.39101 0.95504 1.07003 0.92234 1.25936 0.95730 1.01816 0.95154 1.70797 1.42845 1.00158 1.40892 0.83405 0.76206 0.73803 0.75977 1.20614 1.21254 1.21193 0.92362 0.93186 0.92354 0.91722 0.92142 0.91901 0.91769 0.91477 0.91456 0.91299 0.95236 0.82707 0.90782 0.94920 0.93565 0.94261 0.98614 0.98866 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 7.88 37.16 0.29 -1.01 16 2 C -0.09 -0.87 3.50 -89.50 -0.31 -1.18 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.12 -1.02 6.36 -25.07 -0.16 -1.18 16 5 C -0.13 -1.20 6.91 -24.74 -0.17 -1.37 16 6 C -0.11 -1.17 6.19 -25.07 -0.16 -1.32 16 7 C -0.09 -0.98 3.09 -89.50 -0.28 -1.26 16 8 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 9 C 0.06 0.78 3.79 -3.83 -0.01 0.77 16 10 N -0.69 -10.46 6.32 -113.78 -0.72 -11.18 16 11 C 0.07 1.05 6.10 -3.82 -0.02 1.02 16 12 C 0.06 1.14 6.28 37.16 0.23 1.37 16 13 O -0.39 -9.56 9.85 -35.23 -0.35 -9.91 16 14 C 0.19 5.23 5.00 36.00 0.18 5.41 16 15 C -0.60 -18.00 9.43 -34.44 -0.32 -18.32 16 16 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 17 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 18 N -0.91 -28.27 13.65 55.43 0.76 -27.51 16 19 Si 1.08 25.67 29.90 -169.99 -5.08 20.58 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 23 H 0.06 0.53 6.62 -51.93 -0.34 0.19 16 24 H 0.05 0.39 8.14 -51.92 -0.42 -0.04 16 25 H 0.06 0.51 6.85 -51.93 -0.36 0.15 16 26 H 0.06 0.54 7.84 -51.93 -0.41 0.13 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.78 7.76 -51.93 -0.40 0.37 16 32 H 0.07 0.80 6.91 -51.93 -0.36 0.44 16 33 H 0.03 0.36 6.42 -51.93 -0.33 0.03 16 34 H 0.35 6.05 8.29 -39.29 -0.33 5.72 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.00 -0.11 8.01 -51.93 -0.42 -0.52 16 40 H -0.01 -0.18 8.01 -51.93 -0.42 -0.59 16 41 H 0.27 8.25 7.22 -40.82 -0.29 7.95 16 LS Contribution 322.33 15.07 4.86 4.86 Total: -1.00 -31.29 322.33 -8.87 -40.16 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -7.51 Total: -0.34 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -0.83 Total: -16.66 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.04 Total: -38.69 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -0.35 Total: -9.91 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -5.08 Total: 20.58 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.29 -8.87 -40.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385353667.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.041 kcal (2) G-P(sol) polarization free energy of solvation -31.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.50 seconds