Wall clock time and date at job start Mon Mar 30 2020 05:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.05842 * 2 1 4 4 C 1.54367 * 110.04481 * 238.52507 * 2 1 3 5 5 C 1.54890 * 104.19685 * 217.09159 * 4 2 1 6 6 C 1.54884 * 102.74835 * 37.96697 * 5 4 2 7 7 H 1.09010 * 110.59730 * 80.79406 * 6 5 4 8 8 N 1.46897 * 110.48775 * 203.37802 * 6 5 4 9 9 C 1.46905 * 111.00338 * 269.77712 * 8 6 5 10 10 C 1.52998 * 109.47063 * 180.02562 * 9 8 6 11 11 O 1.42896 * 109.47538 * 65.00123 * 10 9 8 12 12 C 1.42901 * 114.00378 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47159 * 180.02562 * 12 11 10 14 14 H 1.07998 * 120.00048 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99769 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00345 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99943 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46644 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.46798 * 120.00009 * 17 15 13 20 20 H 1.48498 * 109.46861 * 239.99861 * 17 15 13 21 21 C 1.53876 * 110.03131 * 121.41369 * 2 1 3 22 22 H 1.09002 * 110.03428 * 359.97438 * 21 2 1 23 23 C 1.53001 * 110.03202 * 238.61878 * 21 2 1 24 24 H 1.09000 * 109.47073 * 298.58765 * 1 2 3 25 25 H 1.08995 * 109.47259 * 58.58072 * 1 2 3 26 26 H 1.08993 * 109.47201 * 178.58767 * 1 2 3 27 27 H 1.09002 * 110.46302 * 98.42487 * 4 2 1 28 28 H 1.09000 * 110.51365 * 335.78312 * 4 2 1 29 29 H 1.09007 * 110.75694 * 279.65389 * 5 4 2 30 30 H 1.08998 * 110.91634 * 156.35721 * 5 4 2 31 31 H 1.00896 * 111.00328 * 33.73217 * 8 6 5 32 32 H 1.09000 * 109.46881 * 300.00043 * 9 8 6 33 33 H 1.08995 * 109.46805 * 60.00057 * 9 8 6 34 34 H 1.09000 * 109.46898 * 185.00153 * 10 9 8 35 35 H 1.08999 * 109.47516 * 304.99942 * 10 9 8 36 36 H 1.08997 * 109.47011 * 300.00522 * 12 11 10 37 37 H 1.09006 * 109.46541 * 60.00243 * 12 11 10 38 38 H 0.97003 * 120.00482 * 179.97438 * 16 15 13 39 39 H 1.09004 * 109.47072 * 302.08915 * 23 21 2 40 40 H 1.08996 * 109.47221 * 62.09133 * 23 21 2 41 41 H 1.09004 * 109.46893 * 182.09700 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0591 -0.7572 -1.2368 5 6 3.3145 -1.5015 -0.7182 6 6 2.8881 -1.9405 0.7046 7 1 2.2789 -2.8434 0.6609 8 7 4.0689 -2.1592 1.5507 9 6 4.5278 -3.5520 1.4645 10 6 5.7558 -3.7406 2.3575 11 8 5.3850 -3.5487 3.7241 12 6 6.4651 -3.7039 4.6468 13 6 5.9628 -3.4815 6.0501 14 1 4.9229 -3.2449 6.2204 15 6 6.8312 -3.5790 7.1166 16 7 8.0976 -3.8667 6.9094 17 14 6.2088 -3.3027 8.8562 18 1 4.7565 -2.9949 8.8191 19 1 6.4351 -4.5284 9.6634 20 1 6.9401 -2.1646 9.4685 21 6 2.0571 -0.7535 1.2338 22 1 1.2229 -1.1188 1.8328 23 6 2.9398 0.1708 2.0748 24 1 -0.3633 0.4917 0.9024 25 1 -0.3633 0.5357 -0.8769 26 1 -0.3633 -1.0273 -0.0253 27 1 2.3303 -0.0557 -2.0258 28 1 1.3154 -1.4683 -1.5964 29 1 4.1716 -0.8294 -0.6744 30 1 3.5371 -2.3688 -1.3396 31 1 4.8103 -1.5187 1.3095 32 1 3.7316 -4.2181 1.7968 33 1 4.7895 -3.7851 0.4324 34 1 6.1493 -4.7485 2.2259 35 1 6.5199 -3.0135 2.0829 36 1 6.8730 -4.7111 4.5626 37 1 7.2442 -2.9761 4.4197 38 1 8.7086 -3.9349 7.6596 39 1 3.7636 0.5409 1.4644 40 1 2.3469 1.0121 2.4335 41 1 3.3380 -0.3822 2.9256 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385384545.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:40 Heat of formation + Delta-G solvation = -72.822124 kcal Electronic energy + Delta-G solvation = -17643.392506 eV Core-core repulsion = 14943.127876 eV Total energy + Delta-G solvation = -2700.264630 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.35651 -36.81983 -34.65069 -32.62263 -30.98151 -30.68834 -28.11021 -26.57681 -24.82878 -23.78047 -22.25597 -21.49411 -20.59331 -18.96463 -16.43776 -15.96693 -15.79511 -15.47009 -14.74818 -14.43017 -13.90990 -13.79517 -13.56563 -13.14027 -13.08718 -12.82126 -12.46241 -12.13610 -12.00142 -11.80766 -11.50487 -11.18156 -10.84682 -10.80971 -10.74868 -10.73039 -10.57864 -10.39567 -10.38019 -10.20987 -9.88402 -9.01327 -8.75006 -8.09163 -8.00200 -6.05228 -4.05899 3.33227 3.39467 3.46850 4.25456 4.40783 4.54561 4.59021 4.80989 4.95310 5.16525 5.25873 5.31393 5.35603 5.40309 5.47527 5.55028 5.58396 5.68670 5.71783 5.74118 5.80637 5.81742 5.98844 6.01567 6.05906 6.14936 6.16188 6.24524 6.30034 6.37605 6.51795 6.74844 7.17051 7.33703 7.50136 7.66101 7.87311 8.23423 8.68766 9.09589 9.58944 11.06562 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.033360 B = 0.004356 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.136372 B = 6425.706370 C = 7020.526169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.071 0.929 4 C -0.116 4.116 5 C -0.155 4.155 6 C 0.088 3.912 7 H 0.078 0.922 8 N -0.665 5.665 9 C 0.065 3.935 10 C 0.065 3.935 11 O -0.380 6.380 12 C 0.193 3.807 13 C -0.509 4.509 14 H 0.067 0.933 15 C 0.055 3.945 16 N -0.901 5.901 17 Si 0.906 3.094 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.081 4.081 22 H 0.071 0.929 23 C -0.136 4.136 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.340 0.660 32 H 0.076 0.924 33 H 0.031 0.969 34 H 0.038 0.962 35 H 0.033 0.967 36 H 0.002 0.998 37 H 0.003 0.997 38 H 0.262 0.738 39 H 0.044 0.956 40 H 0.041 0.959 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.029 5.998 -16.401 20.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 H 0.089 0.911 4 C -0.154 4.154 5 C -0.194 4.194 6 C -0.023 4.023 7 H 0.096 0.904 8 N -0.295 5.295 9 C -0.064 4.064 10 C -0.013 4.013 11 O -0.299 6.299 12 C 0.119 3.881 13 C -0.547 4.547 14 H 0.086 0.914 15 C -0.146 4.146 16 N -0.541 5.541 17 Si 0.734 3.266 18 H -0.194 1.194 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.100 4.100 22 H 0.089 0.911 23 C -0.194 4.194 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.159 0.841 32 H 0.094 0.906 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.019 0.981 37 H 0.021 0.979 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.406 5.893 -15.642 20.236 hybrid contribution 0.621 0.009 -0.122 0.633 sum -10.784 5.902 -15.764 19.991 Atomic orbital electron populations 1.21871 0.95306 1.01609 1.01302 1.21901 0.95373 0.99464 0.94759 0.91074 1.22351 0.97113 0.98800 0.97134 1.23232 0.98142 0.99869 0.98205 1.22447 0.92775 0.97935 0.89101 0.90364 1.60407 1.08467 1.04527 1.56126 1.22002 0.97998 0.90454 0.95993 1.22229 0.94904 0.98340 0.85839 1.87955 1.37039 1.91974 1.12943 1.20184 0.85349 0.94936 0.87664 1.21114 0.96491 1.47290 0.89805 0.91449 1.24949 0.94726 0.95313 0.99615 1.69978 1.03345 1.49185 1.31556 0.86301 0.79132 0.77722 0.83476 1.19442 1.20925 1.20901 1.21776 0.97781 0.95027 0.95407 0.91052 1.21695 0.98579 0.98215 1.00897 0.92702 0.93138 0.92712 0.92137 0.91706 0.91452 0.92028 0.84103 0.90557 0.95050 0.94359 0.94906 0.98065 0.97928 0.92824 0.93693 0.93980 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.85 37.16 0.33 -0.90 16 2 C -0.10 -0.92 3.16 -89.45 -0.28 -1.21 16 3 H 0.07 0.69 7.67 -51.93 -0.40 0.29 16 4 C -0.12 -1.04 6.36 -25.02 -0.16 -1.20 16 5 C -0.16 -1.56 6.46 -24.74 -0.16 -1.72 16 6 C 0.09 1.06 3.05 -66.06 -0.20 0.86 16 7 H 0.08 0.96 7.82 -51.92 -0.41 0.56 16 8 N -0.67 -9.74 4.74 -104.98 -0.50 -10.24 16 9 C 0.06 0.98 5.93 -3.82 -0.02 0.96 16 10 C 0.07 1.23 6.22 37.16 0.23 1.46 16 11 O -0.38 -9.42 10.27 -35.23 -0.36 -9.78 16 12 C 0.19 5.44 5.69 36.01 0.20 5.64 16 13 C -0.51 -15.35 9.43 -34.44 -0.32 -15.67 16 14 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 17 Si 0.91 22.26 29.54 -169.99 -5.02 17.24 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 21 C -0.08 -0.94 3.13 -89.50 -0.28 -1.22 16 22 H 0.07 0.88 7.67 -51.93 -0.40 0.48 16 23 C -0.14 -1.74 8.02 37.16 0.30 -1.45 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.46 8.12 -51.93 -0.42 0.04 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.55 7.84 -51.93 -0.41 0.15 16 29 H 0.07 0.69 7.79 -51.93 -0.40 0.28 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.34 4.78 7.75 -39.29 -0.30 4.48 16 32 H 0.08 1.21 8.08 -51.93 -0.42 0.79 16 33 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 37 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.04 0.54 8.00 -51.93 -0.42 0.13 16 40 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 1.28 7.41 -51.93 -0.39 0.89 16 LS Contribution 326.63 15.07 4.92 4.92 Total: -1.00 -31.17 326.63 -8.42 -39.60 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -7.73 Total: -2.09 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -0.47 Total: -12.95 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.24 Total: -36.94 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -0.36 Total: -9.78 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.17 -8.42 -39.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385384545.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.227 kcal (2) G-P(sol) polarization free energy of solvation -31.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds