Wall clock time and date at job start Mon Mar 30 2020 05:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.43771 * 2 1 4 4 C 1.54892 * 110.48592 * 237.45771 * 2 1 3 5 5 C 1.54885 * 102.75046 * 203.24713 * 4 2 1 6 6 C 1.54273 * 104.19251 * 37.94548 * 5 4 2 7 7 H 1.09002 * 110.03192 * 95.67784 * 6 5 4 8 8 N 1.46908 * 110.02897 * 217.10497 * 6 5 4 9 9 C 1.46897 * 110.99731 * 273.54616 * 8 6 5 10 10 C 1.53000 * 109.47200 * 180.02562 * 9 8 6 11 11 O 1.42898 * 109.47093 * 64.99406 * 10 9 8 12 12 C 1.42903 * 113.99817 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46956 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00064 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99913 * 180.02562 * 13 12 11 16 16 N 1.31520 * 120.00061 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00181 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47290 * 59.99489 * 17 15 13 19 19 H 1.48497 * 109.47187 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47131 * 300.00030 * 17 15 13 21 21 C 1.53869 * 106.59806 * 336.38783 * 6 5 4 22 22 H 1.09003 * 110.03349 * 240.71458 * 21 6 5 23 23 C 1.53000 * 110.03346 * 119.29005 * 21 6 5 24 24 H 1.08992 * 109.47134 * 179.29834 * 1 2 3 25 25 H 1.08998 * 109.47101 * 299.30158 * 1 2 3 26 26 H 1.09002 * 109.46834 * 59.29823 * 1 2 3 27 27 H 1.08999 * 110.75198 * 321.56765 * 4 2 1 28 28 H 1.09002 * 110.75241 * 84.93108 * 4 2 1 29 29 H 1.08998 * 110.48617 * 156.61766 * 5 4 2 30 30 H 1.08993 * 110.48686 * 279.26817 * 5 4 2 31 31 H 1.00899 * 111.00039 * 37.49803 * 8 6 5 32 32 H 1.09003 * 109.47343 * 300.00007 * 9 8 6 33 33 H 1.09004 * 109.47531 * 59.99827 * 9 8 6 34 34 H 1.08994 * 109.47420 * 185.00304 * 10 9 8 35 35 H 1.09003 * 109.46380 * 304.99909 * 10 9 8 36 36 H 1.09004 * 109.47416 * 300.00694 * 12 11 10 37 37 H 1.09007 * 109.47009 * 60.00270 * 12 11 10 38 38 H 0.96996 * 119.99918 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.46633 * 301.37725 * 23 21 6 40 40 H 1.08999 * 109.47234 * 61.37413 * 23 21 6 41 41 H 1.09002 * 109.47550 * 181.37854 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7805 -1.2232 5 6 3.4920 -1.1941 -0.7629 6 6 3.3201 -1.5377 0.7313 7 1 3.1749 -2.6111 0.8533 8 7 4.5012 -1.1000 1.4873 9 6 5.5468 -2.1317 1.4741 10 6 6.7577 -1.6410 2.2702 11 8 6.3945 -1.4881 3.6438 12 6 7.4599 -1.0306 4.4792 13 6 6.9677 -0.9065 5.8981 14 1 5.9439 -1.1528 6.1381 15 6 7.8245 -0.4785 6.8900 16 7 9.0714 -0.1791 6.5979 17 14 7.2148 -0.3254 8.6490 18 1 6.7455 -1.6506 9.1274 19 1 8.3218 0.1501 9.5170 20 1 6.0922 0.6455 8.7010 21 6 2.0727 -0.7785 1.2162 22 1 2.3437 -0.0853 2.0126 23 6 1.0191 -1.7679 1.7180 24 1 -0.3633 -1.0275 -0.0126 25 1 -0.3633 0.5029 0.8962 26 1 -0.3633 0.5247 -0.8837 27 1 1.4593 -1.6595 -1.4229 28 1 2.1229 -0.1362 -2.1009 29 1 3.8337 -2.0675 -1.3182 30 1 4.1893 -0.3656 -0.8860 31 1 4.8535 -0.2237 1.1322 32 1 5.1612 -3.0455 1.9264 33 1 5.8453 -2.3335 0.4454 34 1 7.5661 -2.3673 2.1867 35 1 7.0889 -0.6815 1.8730 36 1 8.2832 -1.7440 4.4415 37 1 7.8053 -0.0583 4.1277 38 1 9.6742 0.1216 7.2958 39 1 0.7548 -2.4556 0.9146 40 1 1.4211 -2.3307 2.5604 41 1 0.1306 -1.2224 2.0362 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385384546.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:44 Heat of formation + Delta-G solvation = -71.920430 kcal Electronic energy + Delta-G solvation = -17559.853605 eV Core-core repulsion = 14859.628075 eV Total energy + Delta-G solvation = -2700.225530 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.41308 -36.84427 -34.74939 -32.62472 -31.28481 -30.41472 -28.08362 -26.55964 -24.73484 -24.15120 -22.24243 -21.45855 -20.69567 -18.64794 -16.41705 -16.28944 -15.79921 -15.23905 -14.99629 -14.40051 -14.18333 -13.75125 -13.72184 -13.15613 -13.04207 -12.82255 -12.35410 -12.22190 -11.89068 -11.80752 -11.50968 -11.24917 -10.87621 -10.85907 -10.78328 -10.76512 -10.61599 -10.45979 -10.27272 -10.26859 -9.89704 -9.03537 -8.73695 -8.09268 -8.02712 -6.04556 -4.05399 3.37062 3.39009 3.43671 4.27623 4.40979 4.50977 4.56898 4.78294 4.95611 5.19016 5.27955 5.28600 5.31798 5.40757 5.43152 5.49392 5.56388 5.67178 5.70225 5.71276 5.74227 5.81384 5.93733 5.98720 6.01342 6.08538 6.14998 6.20095 6.25721 6.34072 6.38555 6.50177 7.17293 7.35242 7.50539 7.66179 7.87312 8.23876 8.69253 9.09345 9.59226 11.07180 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030939 B = 0.004284 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.790432 B = 6534.352231 C = 7143.440838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.071 0.929 4 C -0.116 4.116 5 C -0.156 4.156 6 C 0.088 3.912 7 H 0.078 0.922 8 N -0.669 5.669 9 C 0.065 3.935 10 C 0.065 3.935 11 O -0.380 6.380 12 C 0.194 3.806 13 C -0.511 4.511 14 H 0.066 0.934 15 C 0.055 3.945 16 N -0.901 5.901 17 Si 0.908 3.092 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.085 4.085 22 H 0.086 0.914 23 C -0.141 4.141 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.339 0.661 32 H 0.076 0.924 33 H 0.032 0.968 34 H 0.039 0.961 35 H 0.033 0.967 36 H 0.002 0.998 37 H 0.003 0.997 38 H 0.263 0.737 39 H 0.049 0.951 40 H 0.056 0.944 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.646 -1.657 -15.984 21.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.090 0.910 4 C -0.154 4.154 5 C -0.195 4.195 6 C -0.022 4.022 7 H 0.096 0.904 8 N -0.300 5.300 9 C -0.064 4.064 10 C -0.013 4.013 11 O -0.299 6.299 12 C 0.119 3.881 13 C -0.549 4.549 14 H 0.084 0.916 15 C -0.146 4.146 16 N -0.541 5.541 17 Si 0.735 3.265 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.104 4.104 22 H 0.104 0.896 23 C -0.198 4.198 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.158 0.842 32 H 0.094 0.906 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.019 0.981 37 H 0.021 0.979 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.892 -1.840 -15.187 20.665 hybrid contribution 0.589 0.275 -0.153 0.668 sum -13.304 -1.565 -15.341 20.366 Atomic orbital electron populations 1.21876 0.95309 1.01833 1.01161 1.22020 0.95348 0.99125 0.94912 0.91012 1.22484 0.95878 0.99649 0.97368 1.23159 0.97488 1.00917 0.97951 1.22322 0.91133 0.99301 0.89466 0.90378 1.60465 1.06638 1.05405 1.57451 1.21987 0.91969 0.95806 0.96606 1.22233 0.94782 0.98296 0.86023 1.87958 1.38845 1.87806 1.15331 1.20177 0.85498 0.93082 0.89322 1.21040 0.98052 1.44359 0.91430 0.91557 1.24947 0.94739 0.95340 0.99529 1.69961 1.04728 1.45680 1.33721 0.86401 0.78188 0.78654 0.83256 1.20050 1.21235 1.20003 1.21777 0.93858 0.97341 0.97423 0.89589 1.21891 0.98499 0.98824 1.00632 0.92240 0.92628 0.93327 0.91601 0.92071 0.92027 0.91607 0.84249 0.90566 0.95019 0.94329 0.94886 0.98054 0.97927 0.92708 0.93221 0.92495 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 7.99 37.16 0.30 -0.92 16 2 C -0.10 -0.93 3.37 -88.96 -0.30 -1.23 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.12 -1.04 6.33 -24.74 -0.16 -1.20 16 5 C -0.16 -1.58 6.39 -25.07 -0.16 -1.74 16 6 C 0.09 1.07 2.88 -66.59 -0.19 0.88 16 7 H 0.08 0.98 7.36 -51.93 -0.38 0.60 16 8 N -0.67 -10.06 6.11 -105.54 -0.65 -10.70 16 9 C 0.07 1.01 5.89 -3.83 -0.02 0.98 16 10 C 0.06 1.24 6.22 37.16 0.23 1.47 16 11 O -0.38 -9.53 10.27 -35.23 -0.36 -9.90 16 12 C 0.19 5.49 5.69 36.01 0.20 5.70 16 13 C -0.51 -15.50 9.43 -34.44 -0.32 -15.82 16 14 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.55 13.29 55.43 0.74 -26.81 16 17 Si 0.91 22.34 29.54 -169.99 -5.02 17.32 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 21 C -0.08 -0.99 3.22 -89.50 -0.29 -1.28 16 22 H 0.09 1.19 7.92 -51.93 -0.41 0.78 16 23 C -0.14 -1.51 7.66 37.16 0.28 -1.23 16 24 H 0.06 0.48 6.50 -51.93 -0.34 0.14 16 25 H 0.05 0.47 7.78 -51.93 -0.40 0.07 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.56 8.06 -51.93 -0.42 0.15 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.68 7.58 -51.93 -0.39 0.28 16 31 H 0.34 4.86 8.13 -39.29 -0.32 4.54 16 32 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 33 H 0.03 0.41 8.10 -51.93 -0.42 -0.01 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 37 H 0.00 0.09 8.14 -51.92 -0.42 -0.34 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.05 0.47 7.58 -51.93 -0.39 0.08 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.55 6.79 -51.93 -0.35 0.20 16 LS Contribution 324.34 15.07 4.89 4.89 Total: -1.00 -31.53 324.34 -8.53 -40.06 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -7.60 Total: -2.02 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -0.52 Total: -12.84 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.09 Total: -37.51 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: -0.36 Total: -9.90 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.53 -8.53 -40.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385384546.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.862 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds