Wall clock time and date at job start Mon Mar 30 2020 05:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.43771 * 2 1 4 4 C 1.54892 * 110.48592 * 237.45771 * 2 1 3 5 5 C 1.54885 * 102.75046 * 203.24713 * 4 2 1 6 6 C 1.54273 * 104.19251 * 37.94548 * 5 4 2 7 7 H 1.09002 * 110.03192 * 95.67784 * 6 5 4 8 8 N 1.46908 * 110.02897 * 217.10497 * 6 5 4 9 9 C 1.46897 * 110.99731 * 273.54616 * 8 6 5 10 10 C 1.53000 * 109.47200 * 180.02562 * 9 8 6 11 11 O 1.42898 * 109.47093 * 64.99406 * 10 9 8 12 12 C 1.42903 * 113.99817 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46956 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00064 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99913 * 180.02562 * 13 12 11 16 16 N 1.31520 * 120.00061 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00181 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47290 * 59.99489 * 17 15 13 19 19 H 1.48497 * 109.47187 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47131 * 300.00030 * 17 15 13 21 21 C 1.53869 * 106.59806 * 336.38783 * 6 5 4 22 22 H 1.09003 * 110.03349 * 240.71458 * 21 6 5 23 23 C 1.53000 * 110.03346 * 119.29005 * 21 6 5 24 24 H 1.08992 * 109.47134 * 179.29834 * 1 2 3 25 25 H 1.08998 * 109.47101 * 299.30158 * 1 2 3 26 26 H 1.09002 * 109.46834 * 59.29823 * 1 2 3 27 27 H 1.08999 * 110.75198 * 321.56765 * 4 2 1 28 28 H 1.09002 * 110.75241 * 84.93108 * 4 2 1 29 29 H 1.08998 * 110.48617 * 156.61766 * 5 4 2 30 30 H 1.08993 * 110.48686 * 279.26817 * 5 4 2 31 31 H 1.00899 * 111.00039 * 37.49803 * 8 6 5 32 32 H 1.09003 * 109.47343 * 300.00007 * 9 8 6 33 33 H 1.09004 * 109.47531 * 59.99827 * 9 8 6 34 34 H 1.08994 * 109.47420 * 185.00304 * 10 9 8 35 35 H 1.09003 * 109.46380 * 304.99909 * 10 9 8 36 36 H 1.09004 * 109.47416 * 300.00694 * 12 11 10 37 37 H 1.09007 * 109.47009 * 60.00270 * 12 11 10 38 38 H 0.96996 * 119.99918 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.46633 * 301.37725 * 23 21 6 40 40 H 1.08999 * 109.47234 * 61.37413 * 23 21 6 41 41 H 1.09002 * 109.47550 * 181.37854 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7805 -1.2232 5 6 3.4920 -1.1941 -0.7629 6 6 3.3201 -1.5377 0.7313 7 1 3.1749 -2.6111 0.8533 8 7 4.5012 -1.1000 1.4873 9 6 5.5468 -2.1317 1.4741 10 6 6.7577 -1.6410 2.2702 11 8 6.3945 -1.4881 3.6438 12 6 7.4599 -1.0306 4.4792 13 6 6.9677 -0.9065 5.8981 14 1 5.9439 -1.1528 6.1381 15 6 7.8245 -0.4785 6.8900 16 7 9.0714 -0.1791 6.5979 17 14 7.2148 -0.3254 8.6490 18 1 6.7455 -1.6506 9.1274 19 1 8.3218 0.1501 9.5170 20 1 6.0922 0.6455 8.7010 21 6 2.0727 -0.7785 1.2162 22 1 2.3437 -0.0853 2.0126 23 6 1.0191 -1.7679 1.7180 24 1 -0.3633 -1.0275 -0.0126 25 1 -0.3633 0.5029 0.8962 26 1 -0.3633 0.5247 -0.8837 27 1 1.4593 -1.6595 -1.4229 28 1 2.1229 -0.1362 -2.1009 29 1 3.8337 -2.0675 -1.3182 30 1 4.1893 -0.3656 -0.8860 31 1 4.8535 -0.2237 1.1322 32 1 5.1612 -3.0455 1.9264 33 1 5.8453 -2.3335 0.4454 34 1 7.5661 -2.3673 2.1867 35 1 7.0889 -0.6815 1.8730 36 1 8.2832 -1.7440 4.4415 37 1 7.8053 -0.0583 4.1277 38 1 9.6742 0.1216 7.2958 39 1 0.7548 -2.4556 0.9146 40 1 1.4211 -2.3307 2.5604 41 1 0.1306 -1.2224 2.0362 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385384546.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:43 Heat of formation + Delta-G solvation = -92.246933 kcal Electronic energy + Delta-G solvation = -17560.735028 eV Core-core repulsion = 14859.628075 eV Total energy + Delta-G solvation = -2701.106953 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.32300 -38.62752 -36.04850 -34.81752 -32.17662 -31.47639 -29.68752 -28.32499 -25.60078 -25.09159 -24.45765 -22.85501 -21.56228 -19.52027 -18.61494 -17.52959 -17.32453 -16.69716 -16.45001 -16.05358 -15.41659 -15.02818 -14.83597 -14.53721 -14.24896 -13.86038 -13.72984 -13.35807 -13.10513 -13.00171 -12.87889 -12.68692 -12.59374 -12.44185 -12.22708 -11.93257 -11.62286 -11.60291 -11.44079 -11.27608 -11.18747 -11.11619 -10.85144 -10.19063 -9.15202 -8.31459 -6.43650 1.39676 1.44927 1.53327 2.35697 3.02025 3.18244 3.27595 3.66860 3.73558 3.97390 4.23108 4.25300 4.40905 4.45920 4.46782 4.53938 4.58598 4.62407 4.66255 4.75826 4.81803 4.83623 4.92041 4.98429 5.01579 5.04949 5.13922 5.18843 5.24263 5.27037 5.33499 5.46128 5.49421 5.55800 5.64308 5.97886 6.25288 6.51665 6.59084 6.86759 7.28642 8.80832 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030939 B = 0.004284 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.790432 B = 6534.352231 C = 7143.440838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.092 4.092 3 H 0.065 0.935 4 C -0.109 4.109 5 C -0.150 4.150 6 C 0.088 3.912 7 H 0.074 0.926 8 N -0.693 5.693 9 C 0.077 3.923 10 C 0.055 3.945 11 O -0.397 6.397 12 C 0.208 3.792 13 C -0.548 4.548 14 H 0.059 0.941 15 C 0.007 3.993 16 N -0.932 5.932 17 Si 0.983 3.017 18 H -0.265 1.265 19 H -0.273 1.273 20 H -0.266 1.266 21 C -0.087 4.087 22 H 0.056 0.944 23 C -0.137 4.137 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.340 0.660 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.047 0.953 35 H 0.038 0.962 36 H -0.016 1.016 37 H -0.017 1.017 38 H 0.271 0.729 39 H 0.065 0.935 40 H 0.037 0.963 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.884 -1.833 -16.563 22.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 H 0.084 0.916 4 C -0.147 4.147 5 C -0.189 4.189 6 C -0.022 4.022 7 H 0.093 0.907 8 N -0.324 5.324 9 C -0.052 4.052 10 C -0.023 4.023 11 O -0.317 6.317 12 C 0.133 3.867 13 C -0.586 4.586 14 H 0.077 0.923 15 C -0.192 4.192 16 N -0.571 5.571 17 Si 0.806 3.194 18 H -0.190 1.190 19 H -0.198 1.198 20 H -0.191 1.191 21 C -0.106 4.106 22 H 0.075 0.925 23 C -0.194 4.194 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.159 0.841 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.001 0.999 37 H 0.001 0.999 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.056 0.944 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.139 -2.023 -15.798 21.974 hybrid contribution 0.998 0.330 -0.048 1.053 sum -14.140 -1.693 -15.846 21.305 Atomic orbital electron populations 1.21855 0.94134 1.02374 1.01566 1.21983 0.96301 0.98554 0.94265 0.91643 1.22467 0.94983 1.00054 0.97214 1.23086 0.98385 1.01267 0.96193 1.22368 0.90047 0.99035 0.90753 0.90738 1.60436 1.07364 1.05535 1.59060 1.21863 0.90598 0.95258 0.97466 1.22606 0.97194 0.99087 0.83388 1.87913 1.38038 1.87625 1.18089 1.19800 0.85696 0.91545 0.89636 1.21362 0.98177 1.46080 0.92949 0.92272 1.25963 0.94702 0.94034 1.04463 1.70065 1.05918 1.45472 1.35644 0.85237 0.78103 0.79169 0.76916 1.18998 1.19785 1.19091 1.21765 0.94151 0.97187 0.97536 0.92536 1.21859 0.98397 0.98754 1.00419 0.91628 0.93028 0.92152 0.90660 0.90830 0.91061 0.91767 0.84086 0.91339 0.91578 0.93491 0.94339 0.99860 0.99919 0.92031 0.91637 0.94414 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 7.99 71.98 0.58 -1.54 16 2 C -0.09 -1.66 3.37 -9.72 -0.03 -1.69 16 3 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 4 C -0.11 -1.69 6.33 31.88 0.20 -1.49 16 5 C -0.15 -2.73 6.39 31.67 0.20 -2.53 16 6 C 0.09 2.06 2.88 45.64 0.13 2.19 16 7 H 0.07 1.79 7.36 -2.39 -0.02 1.78 16 8 N -0.69 -20.74 6.11 -487.81 -2.98 -23.72 16 9 C 0.08 2.32 5.89 86.30 0.51 2.83 16 10 C 0.05 2.10 6.22 71.98 0.45 2.54 16 11 O -0.40 -20.46 10.27 -148.98 -1.53 -21.99 16 12 C 0.21 12.23 5.69 71.24 0.41 12.64 16 13 C -0.55 -33.99 9.43 25.60 0.24 -33.74 16 14 H 0.06 3.66 7.81 -2.91 -0.02 3.63 16 15 C 0.01 0.40 5.46 84.65 0.46 0.86 16 16 N -0.93 -57.34 13.29 21.45 0.28 -57.06 16 17 Si 0.98 45.59 29.54 68.60 2.03 47.61 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 21 C -0.09 -1.99 3.22 -10.07 -0.03 -2.03 16 22 H 0.06 1.62 7.92 -2.39 -0.02 1.60 16 23 C -0.14 -2.83 7.66 71.98 0.55 -2.28 16 24 H 0.06 0.90 6.50 -2.39 -0.02 0.88 16 25 H 0.05 0.80 7.78 -2.39 -0.02 0.79 16 26 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.07 1.05 8.06 -2.39 -0.02 1.03 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 1.20 7.58 -2.39 -0.02 1.18 16 31 H 0.34 9.76 8.13 -89.69 -0.73 9.03 16 32 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 33 H 0.07 1.56 8.10 -2.38 -0.02 1.54 16 34 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 35 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 36 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 37 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 38 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 39 H 0.06 1.13 7.58 -2.39 -0.02 1.12 16 40 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.06 1.21 6.79 -2.39 -0.02 1.19 16 Total: -1.00 -68.10 324.34 1.70 -66.40 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.24 Total: 12.99 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: 3.66 Total: -24.23 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -2.70 Total: -80.78 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -1.53 Total: -21.99 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -68.10 1.70 -66.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385384546.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.847 kcal (2) G-P(sol) polarization free energy of solvation -68.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds