Wall clock time and date at job start Mon Mar 30 2020 05:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 110.67772 * 2 1 4 4 C 1.54889 * 110.75401 * 236.76437 * 2 1 3 5 5 C 1.54267 * 104.19633 * 203.55956 * 4 2 1 6 6 C 1.53876 * 106.59825 * 23.61089 * 5 4 2 7 7 H 1.08994 * 110.03075 * 240.66585 * 6 5 4 8 8 C 1.53005 * 110.03118 * 119.28552 * 6 5 4 9 9 N 1.46897 * 109.47076 * 67.09147 * 8 6 5 10 10 C 1.46904 * 110.99524 * 180.02562 * 9 8 6 11 11 C 1.53006 * 109.46673 * 180.02562 * 10 9 8 12 12 O 1.42895 * 109.47036 * 65.00189 * 11 10 9 13 13 C 1.42901 * 113.99948 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47372 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99889 * 0.02562 * 14 13 12 16 16 C 1.37868 * 120.00134 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00542 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 120.00126 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47261 * 90.00206 * 18 16 14 20 20 H 1.48500 * 109.47278 * 210.00457 * 18 16 14 21 21 H 1.48506 * 109.46831 * 329.99852 * 18 16 14 22 22 C 1.54262 * 106.63875 * 359.97438 * 6 5 4 23 23 H 1.08992 * 109.47248 * 181.78284 * 1 2 3 24 24 H 1.09003 * 109.46673 * 301.78461 * 1 2 3 25 25 H 1.09002 * 109.47171 * 61.77858 * 1 2 3 26 26 H 1.09004 * 110.48709 * 84.88455 * 4 2 1 27 27 H 1.08999 * 110.49028 * 322.24081 * 4 2 1 28 28 H 1.09001 * 110.03082 * 264.32497 * 5 4 2 29 29 H 1.09003 * 110.07192 * 142.91661 * 5 4 2 30 30 H 1.09003 * 109.46987 * 307.08968 * 8 6 5 31 31 H 1.08994 * 109.47017 * 187.09454 * 8 6 5 32 32 H 1.00896 * 111.00192 * 56.04708 * 9 8 6 33 33 H 1.08992 * 109.47335 * 60.00263 * 10 9 8 34 34 H 1.08997 * 109.46819 * 299.99898 * 10 9 8 35 35 H 1.09001 * 109.47002 * 184.99666 * 11 10 9 36 36 H 1.08993 * 109.46955 * 305.00103 * 11 10 9 37 37 H 1.08995 * 109.47392 * 299.99575 * 13 12 11 38 38 H 1.09003 * 109.47182 * 59.99587 * 13 12 11 39 39 H 0.96998 * 120.00821 * 179.97438 * 17 16 14 40 40 H 1.09003 * 110.49112 * 95.09300 * 22 6 5 41 41 H 1.08998 * 110.48512 * 217.73630 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9149 1.0198 0.0000 4 6 2.0789 -0.7938 -1.2115 5 6 3.4949 -1.2215 -0.7734 6 6 3.4974 -1.2224 0.7653 7 1 4.2364 -0.5131 1.1379 8 6 3.8090 -2.6263 1.2880 9 7 5.1934 -2.9798 0.9467 10 6 5.5285 -4.3247 1.4335 11 6 6.9749 -4.6563 1.0606 12 8 7.8596 -3.7726 1.7521 13 6 9.2427 -3.9990 1.4730 14 6 10.0796 -3.0161 2.2506 15 1 9.6030 -2.2914 2.8940 16 6 11.4537 -3.0429 2.1415 17 7 12.0342 -3.9257 1.3584 18 14 12.4912 -1.8250 3.1060 19 1 12.8333 -2.4053 4.4293 20 1 13.7391 -1.5343 2.3553 21 1 11.7257 -0.5673 3.2998 22 6 2.0834 -0.7948 1.2097 23 1 -0.3633 -1.0271 0.0320 24 1 -0.3633 0.5413 0.8736 25 1 -0.3634 0.4860 -0.9055 26 1 2.1289 -0.1564 -2.0943 27 1 1.4592 -1.6691 -1.4065 28 1 4.2320 -0.5110 -1.1476 29 1 3.7164 -2.2209 -1.1478 30 1 3.1275 -3.3437 0.8309 31 1 3.6852 -2.6466 2.3707 32 1 5.8406 -2.2936 1.3048 33 1 4.8590 -5.0536 0.9770 34 1 5.4165 -4.3572 2.5172 35 1 7.1959 -5.6857 1.3425 36 1 7.1093 -4.5371 -0.0145 37 1 9.5105 -5.0147 1.7638 38 1 9.4245 -3.8665 0.4064 39 1 13.0009 -3.9443 1.2814 40 1 1.4642 -1.6701 1.4063 41 1 2.1373 -0.1584 2.0929 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385407080.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:30 Heat of formation + Delta-G solvation = -101.378869 kcal Electronic energy + Delta-G solvation = -17145.610329 eV Core-core repulsion = 14444.107386 eV Total energy + Delta-G solvation = -2701.502943 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = -0.78 seconds Orbital eigenvalues (eV) -39.77857 -38.76940 -36.52906 -34.89299 -32.72503 -30.61893 -29.68619 -28.56676 -26.12649 -24.53758 -24.10337 -22.74022 -20.81886 -20.46148 -18.64591 -17.55335 -17.14745 -16.77806 -16.40358 -16.27561 -15.48732 -15.38718 -14.91361 -14.62211 -14.30324 -13.97474 -13.58839 -13.41546 -13.14196 -13.04697 -12.79730 -12.61441 -12.59497 -12.39716 -12.01180 -11.79528 -11.74502 -11.49494 -11.34649 -11.31061 -11.25695 -11.22705 -10.88044 -10.24592 -9.33522 -8.33169 -6.45945 1.39329 1.42365 1.54415 2.33846 3.00607 3.17463 3.22835 3.72046 3.79025 3.88833 4.15347 4.29974 4.33872 4.44356 4.54746 4.57214 4.61869 4.72812 4.74822 4.77420 4.82161 4.83579 4.86834 4.89612 4.95686 5.06015 5.15851 5.16859 5.21434 5.28766 5.39226 5.46017 5.53453 5.58321 5.61981 5.94399 6.13099 6.39960 6.51943 6.80226 7.26105 8.79293 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034076 B = 0.003641 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.495136 B = 7687.859766 C = 8091.736738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 H 0.071 0.929 4 C -0.117 4.117 5 C -0.111 4.111 6 C -0.090 4.090 7 H 0.057 0.943 8 C 0.069 3.931 9 N -0.696 5.696 10 C 0.076 3.924 11 C 0.054 3.946 12 O -0.409 6.409 13 C 0.211 3.789 14 C -0.548 4.548 15 H 0.062 0.938 16 C 0.005 3.995 17 N -0.931 5.931 18 Si 0.985 3.015 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.264 1.264 22 C -0.110 4.110 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.026 0.974 32 H 0.341 0.659 33 H 0.104 0.896 34 H 0.031 0.969 35 H 0.048 0.952 36 H 0.042 0.958 37 H -0.015 1.015 38 H -0.016 1.016 39 H 0.271 0.729 40 H 0.073 0.927 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.973 5.252 -2.231 22.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 H 0.089 0.911 4 C -0.155 4.155 5 C -0.149 4.149 6 C -0.109 4.109 7 H 0.075 0.925 8 C -0.059 4.059 9 N -0.327 5.327 10 C -0.054 4.054 11 C -0.023 4.023 12 O -0.329 6.329 13 C 0.136 3.864 14 C -0.586 4.586 15 H 0.081 0.919 16 C -0.193 4.193 17 N -0.571 5.571 18 Si 0.807 3.193 19 H -0.193 1.193 20 H -0.199 1.199 21 H -0.188 1.188 22 C -0.148 4.148 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.044 0.956 32 H 0.159 0.841 33 H 0.122 0.878 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.003 0.997 38 H 0.002 0.998 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -22.033 5.095 -2.807 22.788 hybrid contribution 1.193 0.124 0.980 1.549 sum -20.840 5.219 -1.827 21.561 Atomic orbital electron populations 1.21731 0.94006 1.02061 1.01965 1.22107 0.96059 0.98825 0.94572 0.91092 1.22441 0.95551 0.99760 0.97744 1.22051 0.96954 1.01307 0.94569 1.21751 0.97550 0.95390 0.96204 0.92464 1.22089 0.89393 0.96928 0.97525 1.60513 1.04349 1.03830 1.64011 1.21900 0.93332 0.92207 0.97923 1.22608 0.90493 0.93150 0.96030 1.87748 1.17604 1.58385 1.69160 1.19792 0.77400 0.95007 0.94179 1.21388 0.91791 1.17769 1.27641 0.91947 1.25988 0.98761 0.98130 0.96466 1.70070 1.11133 1.36796 1.39057 0.85163 0.77395 0.78470 0.78256 1.19255 1.19914 1.18804 1.22449 0.94470 0.99965 0.97895 0.92413 0.92336 0.92251 0.91640 0.91304 0.93239 0.91962 0.90318 0.95571 0.84128 0.87840 0.95033 0.93371 0.93952 0.99725 0.99805 0.92012 0.90826 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.28 71.98 0.67 -1.09 16 2 C -0.10 -1.52 3.49 -9.48 -0.03 -1.56 16 3 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 4 C -0.12 -2.01 6.27 31.67 0.20 -1.81 16 5 C -0.11 -2.42 6.28 31.32 0.20 -2.22 16 6 C -0.09 -1.95 3.09 -10.07 -0.03 -1.98 16 7 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 8 C 0.07 1.63 4.70 86.31 0.41 2.03 16 9 N -0.70 -20.79 6.23 -513.88 -3.20 -23.99 16 10 C 0.08 2.27 6.11 86.30 0.53 2.80 16 11 C 0.05 2.08 6.28 71.98 0.45 2.53 16 12 O -0.41 -20.24 9.85 -148.98 -1.47 -21.71 16 13 C 0.21 12.14 5.69 71.24 0.41 12.55 16 14 C -0.55 -33.12 9.43 25.60 0.24 -32.88 16 15 H 0.06 3.71 7.81 -2.91 -0.02 3.69 16 16 C 0.00 0.29 5.46 84.65 0.46 0.75 16 17 N -0.93 -56.75 13.29 21.44 0.28 -56.47 16 18 Si 0.98 44.76 29.54 68.60 2.03 46.78 16 19 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 21 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 22 C -0.11 -1.88 5.82 31.69 0.18 -1.69 16 23 H 0.06 0.69 8.13 -2.39 -0.02 0.67 16 24 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.07 1.10 8.05 -2.39 -0.02 1.09 16 28 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.06 1.50 7.60 -2.39 -0.02 1.48 16 30 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.34 11.73 8.29 -89.70 -0.74 10.99 16 33 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 37 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 38 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 39 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 40 H 0.07 1.16 7.76 -2.39 -0.02 1.14 16 41 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -64.74 330.20 1.54 -63.20 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.22 Total: 14.76 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: 3.68 Total: -22.58 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: -2.92 Total: -80.45 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -1.47 Total: -21.71 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -64.74 1.54 -63.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385407080.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.181 kcal (2) G-P(sol) polarization free energy of solvation -64.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.78 seconds