Wall clock time and date at job start Mon Mar 30 2020 04:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42897 * 109.47541 * 2 1 4 4 C 1.53004 * 109.46771 * 119.99807 * 2 1 3 5 5 N 1.46901 * 109.46916 * 304.99771 * 4 2 1 6 6 C 1.46905 * 110.99870 * 180.02562 * 5 4 2 7 7 C 1.52993 * 109.47039 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47360 * 180.02562 * 7 6 5 9 9 C 1.52993 * 109.47360 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47393 * 180.02562 * 9 8 7 11 11 H 1.08010 * 119.99765 * 359.97438 * 10 9 8 12 12 C 1.37872 * 120.00736 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99566 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00463 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47101 * 0.02562 * 14 12 10 16 16 H 1.48510 * 109.46859 * 120.00133 * 14 12 10 17 17 H 1.48499 * 109.47506 * 240.00180 * 14 12 10 18 18 C 1.52999 * 109.47345 * 239.99383 * 2 1 3 19 19 C 1.53002 * 117.49652 * 128.62570 * 18 2 1 20 20 C 1.53001 * 117.49911 * 60.00270 * 18 2 1 21 21 H 1.08997 * 109.47075 * 300.00436 * 1 2 3 22 22 H 1.09004 * 109.46644 * 60.00295 * 1 2 3 23 23 H 1.08997 * 109.47308 * 180.02562 * 1 2 3 24 24 H 0.96693 * 114.00429 * 180.02562 * 3 2 1 25 25 H 1.09004 * 109.46889 * 185.00151 * 4 2 1 26 26 H 1.08995 * 109.47384 * 64.99792 * 4 2 1 27 27 H 1.00901 * 111.00067 * 303.95263 * 5 4 2 28 28 H 1.09001 * 109.46798 * 300.00327 * 6 5 4 29 29 H 1.08998 * 109.46961 * 60.00043 * 6 5 4 30 30 H 1.09001 * 109.47393 * 299.99719 * 7 6 5 31 31 H 1.08998 * 109.47408 * 60.00073 * 7 6 5 32 32 H 1.09001 * 109.46514 * 300.00105 * 8 7 6 33 33 H 1.08998 * 109.46924 * 59.99625 * 8 7 6 34 34 H 1.09001 * 109.47393 * 299.99567 * 9 8 7 35 35 H 1.08998 * 109.47408 * 59.99921 * 9 8 7 36 36 H 0.97002 * 119.99740 * 180.02562 * 13 12 10 37 37 H 1.08996 * 115.55032 * 274.33466 * 18 2 1 38 38 H 1.08997 * 117.50259 * 0.02562 * 19 18 2 39 39 H 1.09004 * 117.49478 * 145.02408 * 19 18 2 40 40 H 1.08995 * 117.50227 * 214.97944 * 20 18 2 41 41 H 1.09001 * 117.49263 * 0.02562 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.4541 -0.1018 2.4456 6 6 1.9228 -0.7696 3.6673 7 6 1.2923 -0.0987 4.8892 8 6 1.7809 -0.7937 6.1617 9 6 1.1509 -0.1224 7.3836 10 6 1.6326 -0.8065 8.6369 11 1 2.3192 -1.6375 8.5687 12 6 1.1970 -0.3719 9.8707 13 7 0.3605 0.6396 9.9537 14 14 1.7936 -1.2204 11.4241 15 1 2.7212 -2.3219 11.0614 16 1 2.5034 -0.2386 12.2830 17 1 0.6309 -1.7750 12.1631 18 6 2.0400 -0.7214 -1.2491 19 6 3.0743 0.0050 -2.1115 20 6 1.6359 -0.1498 -2.6096 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 2.9703 1.4236 -0.0004 25 1 3.1263 -0.6443 1.2953 26 1 1.7515 -1.7714 1.2057 27 1 1.6533 0.8869 2.4753 28 1 1.6340 -1.8203 3.6406 29 1 3.0083 -0.6927 3.7298 30 1 1.5808 0.9521 4.9161 31 1 0.2069 -0.1760 4.8265 32 1 1.4928 -1.8446 6.1350 33 1 2.8663 -0.7160 6.2241 34 1 1.4394 0.9284 7.4100 35 1 0.0654 -0.1996 7.3213 36 1 0.0543 0.9457 10.8217 37 1 2.1267 -1.8045 -1.1640 38 1 3.3916 0.9965 -1.7888 39 1 3.8417 -0.6004 -2.5939 40 1 1.4570 -0.8568 -3.4196 41 1 1.0069 0.7405 -2.6146 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385873440.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:45:28 Heat of formation + Delta-G solvation = -54.175104 kcal Electronic energy + Delta-G solvation = -17030.219802 eV Core-core repulsion = 14330.763768 eV Total energy + Delta-G solvation = -2699.456034 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.68205 -36.57958 -35.25379 -33.99975 -32.31609 -30.89590 -28.27613 -26.07688 -24.24486 -22.61897 -22.36771 -21.38009 -20.15842 -19.91623 -17.21005 -16.49263 -16.08025 -15.88247 -14.99006 -14.61590 -14.42245 -13.94109 -13.83961 -13.18214 -12.69396 -12.44726 -12.34021 -12.28414 -11.97220 -11.64318 -11.57938 -11.38851 -11.20429 -10.98678 -10.83408 -10.54302 -10.48490 -10.40660 -10.32652 -10.01314 -9.60166 -9.22141 -8.96055 -8.34763 -8.30355 -5.95704 -3.97821 3.33113 3.40280 3.41885 3.44612 3.86461 4.18637 4.48628 4.53853 4.55795 4.63567 4.87511 5.01091 5.06507 5.31068 5.39257 5.40299 5.50740 5.52919 5.56818 5.66094 5.70591 5.80812 5.91889 5.93689 5.94873 6.18509 6.26634 6.30474 6.54862 6.85977 6.99101 7.06415 7.25879 7.40377 7.48995 7.74013 7.90003 8.05809 8.48564 9.10010 9.65959 11.15732 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.071410 B = 0.002982 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.007201 B = 9386.900766 C = 9513.597490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.162 3.838 3 O -0.555 6.555 4 C 0.038 3.962 5 N -0.684 5.684 6 C 0.059 3.941 7 C -0.115 4.115 8 C -0.108 4.108 9 C 0.020 3.980 10 C -0.519 4.519 11 H 0.054 0.946 12 C 0.055 3.945 13 N -0.896 5.896 14 Si 0.891 3.109 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.184 4.184 19 C -0.181 4.181 20 C -0.167 4.167 21 H 0.078 0.922 22 H 0.053 0.947 23 H 0.066 0.934 24 H 0.371 0.629 25 H 0.028 0.972 26 H 0.078 0.922 27 H 0.345 0.655 28 H 0.067 0.933 29 H 0.024 0.976 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.044 0.956 34 H 0.014 0.986 35 H 0.016 0.984 36 H 0.259 0.741 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.106 -1.813 -24.107 24.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.121 3.879 3 O -0.362 6.362 4 C -0.092 4.092 5 N -0.316 5.316 6 C -0.069 4.069 7 C -0.153 4.153 8 C -0.147 4.147 9 C -0.017 4.017 10 C -0.557 4.557 11 H 0.073 0.927 12 C -0.146 4.146 13 N -0.536 5.536 14 Si 0.719 3.281 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.203 4.203 19 C -0.218 4.218 20 C -0.204 4.204 21 H 0.097 0.903 22 H 0.072 0.928 23 H 0.085 0.915 24 H 0.219 0.781 25 H 0.046 0.954 26 H 0.096 0.904 27 H 0.163 0.837 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.033 0.967 35 H 0.034 0.966 36 H 0.069 0.931 37 H 0.127 0.873 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.789 -1.955 -24.012 24.252 hybrid contribution 1.902 -0.352 0.963 2.161 sum 4.692 -2.307 -23.049 23.634 Atomic orbital electron populations 1.21574 0.91426 1.02343 1.02871 1.20770 0.95576 0.81057 0.90483 1.86600 1.26322 1.26468 1.96781 1.22549 0.96259 0.99566 0.90808 1.60464 1.62036 1.07916 1.01155 1.22080 0.96640 0.98877 0.89331 1.21630 1.00954 0.99327 0.93405 1.21587 0.99498 0.99074 0.94513 1.19096 0.95977 0.95715 0.90876 1.21332 1.27065 1.16021 0.91320 0.92748 1.25041 0.95215 0.95164 0.99184 1.69984 1.32942 1.26295 1.24343 0.86556 0.78594 0.79534 0.83428 1.19789 1.21049 1.21016 1.23086 1.04761 0.99782 0.92675 1.22969 0.92721 1.02161 1.03907 1.22875 0.97874 1.03248 0.96390 0.90303 0.92817 0.91491 0.78130 0.95364 0.90376 0.83659 0.91409 0.95768 0.92748 0.91626 0.93483 0.93743 0.96724 0.96585 0.93110 0.87347 0.88329 0.88952 0.89005 0.88356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 8.47 37.16 0.31 -0.96 16 2 C 0.16 1.53 0.98 -90.62 -0.09 1.44 16 3 O -0.56 -5.46 11.65 -35.23 -0.41 -5.87 16 4 C 0.04 0.40 4.84 -3.82 -0.02 0.38 16 5 N -0.68 -8.68 5.52 -113.78 -0.63 -9.31 16 6 C 0.06 0.86 5.68 -3.82 -0.02 0.83 16 7 C -0.12 -2.02 5.47 -26.73 -0.15 -2.16 16 8 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 9 C 0.02 0.54 4.97 -27.89 -0.14 0.41 16 10 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 11 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 12 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -27.56 13.29 55.43 0.74 -26.83 16 14 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 15 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 18 C -0.18 -1.46 5.15 -90.62 -0.47 -1.93 16 19 C -0.18 -1.26 9.74 -26.73 -0.26 -1.52 16 20 C -0.17 -1.25 9.67 -26.73 -0.26 -1.51 16 21 H 0.08 0.94 7.47 -51.93 -0.39 0.55 16 22 H 0.05 0.52 7.29 -51.93 -0.38 0.14 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.37 2.62 7.56 45.56 0.34 2.97 16 25 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.34 4.40 8.29 -39.29 -0.33 4.08 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.11 0.82 8.11 -51.93 -0.42 0.40 16 38 H 0.10 0.65 6.38 -51.93 -0.33 0.32 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.10 0.81 7.61 -51.93 -0.40 0.41 16 LS Contribution 330.64 15.07 4.98 4.98 Total: -1.00 -30.99 330.64 -8.91 -39.90 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -6.93 Total: 1.48 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -1.63 Total: -21.37 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.11 Total: -36.14 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.41 Total: -5.87 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.99 -8.91 -39.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385873440.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.276 kcal (2) G-P(sol) polarization free energy of solvation -30.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds