Wall clock time and date at job start Mon Mar 30 2020 04:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47053 * 2 1 4 4 H 1.09001 * 109.47240 * 177.47810 * 3 2 1 5 5 C 1.50696 * 109.47148 * 57.47458 * 3 2 1 6 6 H 1.08002 * 119.99974 * 244.17225 * 5 3 2 7 7 C 1.37874 * 119.99899 * 64.18648 * 5 3 2 8 8 N 1.31519 * 120.00373 * 9.65754 * 7 5 3 9 9 Si 1.86805 * 120.00109 * 189.66386 * 7 5 3 10 10 H 1.48498 * 109.47253 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.47178 * 59.99172 * 9 7 5 12 12 H 1.48504 * 109.46745 * 299.99317 * 9 7 5 13 13 N 1.46899 * 109.46704 * 297.47652 * 3 2 1 14 14 C 1.46907 * 111.00304 * 273.80662 * 13 3 2 15 15 C 1.52999 * 109.47244 * 185.41690 * 14 13 3 16 16 O 1.42896 * 110.01744 * 64.93900 * 15 14 13 17 17 C 1.54261 * 110.03189 * 303.54759 * 15 14 13 18 18 C 1.54892 * 104.19780 * 217.10553 * 17 15 14 19 19 C 1.54891 * 102.74576 * 37.93964 * 18 17 15 20 20 C 1.53873 * 110.03052 * 186.37903 * 15 14 13 21 21 H 1.08999 * 110.03230 * 238.56660 * 20 15 14 22 22 C 1.52996 * 110.03302 * 0.02562 * 20 15 14 23 23 H 1.08998 * 109.47305 * 305.23285 * 1 2 3 24 24 H 1.09000 * 109.47313 * 65.24099 * 1 2 3 25 25 H 1.09007 * 109.47320 * 185.23558 * 1 2 3 26 26 H 1.09005 * 109.47049 * 239.99626 * 2 1 3 27 27 H 1.08998 * 109.46616 * 119.99869 * 2 1 3 28 28 H 0.97005 * 119.99678 * 356.95231 * 8 7 5 29 29 H 1.00895 * 111.00364 * 37.76691 * 13 3 2 30 30 H 1.09000 * 109.47132 * 305.41807 * 14 13 3 31 31 H 1.08995 * 109.46544 * 65.41583 * 14 13 3 32 32 H 0.96700 * 114.00605 * 300.70044 * 16 15 14 33 33 H 1.08995 * 110.49288 * 335.78598 * 17 15 14 34 34 H 1.09003 * 110.48685 * 98.29767 * 17 15 14 35 35 H 1.08995 * 110.76228 * 156.25636 * 18 17 15 36 36 H 1.09001 * 110.75588 * 279.63520 * 18 17 15 37 37 H 1.09001 * 110.48318 * 80.73678 * 19 18 17 38 38 H 1.08991 * 110.48996 * 203.24347 * 19 18 17 39 39 H 1.09000 * 109.47630 * 59.99707 * 22 20 15 40 40 H 1.08998 * 109.47218 * 179.97438 * 22 20 15 41 41 H 1.09004 * 109.46823 * 299.99360 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1290 1.4428 0.0452 5 6 1.4872 2.1707 1.1979 6 1 0.8167 3.0061 1.0600 7 6 1.8375 1.7706 2.4700 8 7 2.7942 0.8844 2.6406 9 14 0.9533 2.4872 3.9513 10 1 1.5120 1.8974 5.1943 11 1 -0.4955 2.1733 3.8626 12 1 1.1401 3.9602 3.9744 13 7 1.6007 2.1170 -1.2288 14 6 2.5460 1.8779 -2.3275 15 6 2.1294 2.7021 -3.5473 16 8 2.2405 4.0967 -3.2564 17 6 0.6793 2.3594 -3.9464 18 6 0.6906 2.4039 -5.4946 19 6 2.0706 1.7934 -5.8439 20 6 3.0141 2.3422 -4.7538 21 1 3.5283 3.2315 -5.1182 22 6 4.0329 1.2724 -4.3559 23 1 -0.3634 0.5928 0.8394 24 1 -0.3634 0.4304 -0.9332 25 1 -0.3634 -1.0234 0.0938 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 3.2231 0.4794 1.8705 29 1 0.6680 1.8300 -1.4853 30 1 3.5480 2.1721 -2.0152 31 1 2.5423 0.8190 -2.5859 32 1 1.6969 4.3877 -2.5115 33 1 0.4123 1.3626 -3.5954 34 1 -0.0119 3.1014 -3.5465 35 1 -0.1157 1.7959 -5.9046 36 1 0.6213 3.4314 -5.8520 37 1 2.0285 0.7051 -5.7993 38 1 2.3940 2.1214 -6.8317 39 1 3.5083 0.3790 -4.0172 40 1 4.6540 1.0241 -5.2166 41 1 4.6622 1.6515 -3.5507 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000392888354.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:06 Heat of formation + Delta-G solvation = -74.956079 kcal Electronic energy + Delta-G solvation = -18776.460980 eV Core-core repulsion = 16076.103815 eV Total energy + Delta-G solvation = -2700.357165 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.61053 -36.46728 -34.73686 -32.62978 -31.46143 -30.68268 -28.09038 -25.71046 -24.78061 -23.57549 -23.26442 -20.90837 -19.51728 -18.60379 -16.91346 -16.46176 -15.57118 -15.16531 -14.71849 -13.98678 -13.69226 -13.64716 -13.41829 -13.07512 -12.79450 -12.66883 -12.11890 -12.01818 -11.64295 -11.38552 -11.19506 -11.14488 -10.96984 -10.76877 -10.64862 -10.56967 -10.27181 -10.13069 -10.08166 -9.98806 -9.90218 -9.44321 -8.66341 -8.19104 -7.33082 -6.30409 -3.98181 3.46177 3.47068 3.65940 4.40537 4.53138 4.61705 4.67190 5.04262 5.14625 5.37047 5.39593 5.44272 5.47737 5.56106 5.64912 5.72511 5.82576 5.89781 5.92280 6.04944 6.05566 6.10025 6.14215 6.18040 6.27145 6.28402 6.37464 6.44453 6.52624 6.64439 6.96986 7.02658 7.22178 7.27135 7.90833 8.14783 8.28218 8.43630 8.65377 8.93450 9.69916 11.06035 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034627 B = 0.006089 C = 0.006044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.429412 B = 4597.485631 C = 4631.226493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.151 4.151 3 C 0.206 3.794 4 H 0.023 0.977 5 C -0.572 4.572 6 H 0.055 0.945 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 1.066 2.934 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.680 5.680 14 C 0.033 3.967 15 C 0.141 3.859 16 O -0.560 6.560 17 C -0.147 4.147 18 C -0.121 4.121 19 C -0.119 4.119 20 C -0.084 4.084 21 H 0.082 0.918 22 C -0.148 4.148 23 H 0.072 0.928 24 H 0.032 0.968 25 H 0.028 0.972 26 H 0.019 0.981 27 H 0.067 0.933 28 H 0.268 0.732 29 H 0.327 0.673 30 H 0.072 0.928 31 H 0.029 0.971 32 H 0.385 0.615 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.767 0.238 -14.133 14.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.190 4.190 3 C 0.098 3.902 4 H 0.041 0.959 5 C -0.611 4.611 6 H 0.073 0.927 7 C -0.186 4.186 8 N -0.552 5.552 9 Si 0.895 3.105 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.215 1.215 13 N -0.311 5.311 14 C -0.097 4.097 15 C 0.100 3.900 16 O -0.368 6.368 17 C -0.185 4.185 18 C -0.159 4.159 19 C -0.157 4.157 20 C -0.103 4.103 21 H 0.100 0.900 22 C -0.205 4.205 23 H 0.091 0.909 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.037 0.963 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.145 0.855 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.235 0.765 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.104 0.816 -12.780 12.978 hybrid contribution -0.521 -1.054 -1.391 1.821 sum -2.624 -0.238 -14.171 14.414 Atomic orbital electron populations 1.21595 0.96821 0.99211 1.01267 1.22212 0.96051 1.01383 0.99400 1.19297 0.95109 0.88185 0.87636 0.95904 1.21806 1.31301 1.17077 0.90870 0.92668 1.25715 0.95809 0.96542 1.00554 1.70822 1.21482 1.28473 1.34428 0.83579 0.75510 0.75710 0.75726 1.21024 1.21558 1.21525 1.60702 1.04142 1.62805 1.03480 1.22802 0.98089 0.96797 0.91982 1.21762 0.93099 0.81999 0.93182 1.86357 1.71589 1.23208 1.55616 1.23015 0.97614 1.01989 0.95905 1.22439 0.96785 1.00817 0.95860 1.22443 0.95041 1.00177 0.98001 1.21668 0.95841 0.98781 0.93997 0.90011 1.21979 0.98677 0.98587 1.01238 0.90868 0.94943 0.95270 0.96250 0.91443 0.92085 0.85464 0.91006 0.95322 0.76526 0.91423 0.90859 0.91905 0.91411 0.91592 0.91744 0.92232 0.92901 0.92026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.38 37.16 0.35 -2.33 16 2 C -0.15 -3.39 5.47 -26.73 -0.15 -3.53 16 3 C 0.21 4.97 1.96 -68.87 -0.13 4.84 16 4 H 0.02 0.62 7.10 -51.93 -0.37 0.25 16 5 C -0.57 -15.44 7.30 -34.44 -0.25 -15.69 16 6 H 0.06 1.52 7.83 -52.49 -0.41 1.11 16 7 C 0.02 0.48 5.21 -17.82 -0.09 0.39 16 8 N -0.92 -26.95 13.07 55.43 0.72 -26.23 16 9 Si 1.07 24.93 29.91 -169.99 -5.09 19.85 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.68 -13.76 5.76 -107.95 -0.62 -14.39 16 14 C 0.03 0.59 3.44 -3.82 -0.01 0.58 16 15 C 0.14 2.14 1.13 -89.51 -0.10 2.04 16 16 O -0.56 -9.36 12.90 -35.23 -0.45 -9.82 16 17 C -0.15 -2.00 5.10 -25.07 -0.13 -2.13 16 18 C -0.12 -1.40 6.91 -24.74 -0.17 -1.57 16 19 C -0.12 -1.34 6.36 -25.07 -0.16 -1.50 16 20 C -0.08 -1.12 3.31 -89.50 -0.30 -1.41 16 21 H 0.08 1.14 7.96 -51.93 -0.41 0.72 16 22 C -0.15 -1.87 7.87 37.16 0.29 -1.58 16 23 H 0.07 1.64 6.95 -51.93 -0.36 1.28 16 24 H 0.03 0.59 6.55 -51.93 -0.34 0.25 16 25 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.02 0.40 7.58 -51.93 -0.39 0.00 16 27 H 0.07 1.69 6.32 -51.93 -0.33 1.36 16 28 H 0.27 7.86 5.93 -40.82 -0.24 7.62 16 29 H 0.33 6.27 5.20 -39.29 -0.20 6.07 16 30 H 0.07 1.40 6.90 -51.93 -0.36 1.04 16 31 H 0.03 0.50 5.79 -51.93 -0.30 0.20 16 32 H 0.39 6.18 8.69 45.56 0.40 6.58 16 33 H 0.07 0.94 7.46 -51.93 -0.39 0.55 16 34 H 0.07 1.00 8.06 -51.93 -0.42 0.58 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.71 7.83 -51.93 -0.41 0.30 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.77 6.56 -51.93 -0.34 0.42 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.84 6.92 -51.93 -0.36 0.49 16 LS Contribution 306.77 15.07 4.62 4.62 Total: -1.00 -28.70 306.77 -7.81 -36.51 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -6.15 Total: 11.34 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: -0.85 Total: -21.89 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.10 Total: -40.61 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -0.45 Total: -9.82 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -5.09 Total: 19.85 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.70 -7.81 -36.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392888354.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.443 kcal (2) G-P(sol) polarization free energy of solvation -28.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds