Wall clock time and date at job start Mon Mar 30 2020 04:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47053 * 2 1 4 4 H 1.09001 * 109.47240 * 177.47810 * 3 2 1 5 5 C 1.50696 * 109.47148 * 57.47458 * 3 2 1 6 6 H 1.08002 * 119.99974 * 244.17225 * 5 3 2 7 7 C 1.37874 * 119.99899 * 64.18648 * 5 3 2 8 8 N 1.31519 * 120.00373 * 9.65754 * 7 5 3 9 9 Si 1.86805 * 120.00109 * 189.66386 * 7 5 3 10 10 H 1.48498 * 109.47253 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.47178 * 59.99172 * 9 7 5 12 12 H 1.48504 * 109.46745 * 299.99317 * 9 7 5 13 13 N 1.46899 * 109.46704 * 297.47652 * 3 2 1 14 14 C 1.46907 * 111.00304 * 273.80662 * 13 3 2 15 15 C 1.52999 * 109.47244 * 185.41690 * 14 13 3 16 16 O 1.42896 * 110.01744 * 64.93900 * 15 14 13 17 17 C 1.54261 * 110.03189 * 303.54759 * 15 14 13 18 18 C 1.54892 * 104.19780 * 217.10553 * 17 15 14 19 19 C 1.54891 * 102.74576 * 37.93964 * 18 17 15 20 20 C 1.53873 * 110.03052 * 186.37903 * 15 14 13 21 21 H 1.08999 * 110.03230 * 238.56660 * 20 15 14 22 22 C 1.52996 * 110.03302 * 0.02562 * 20 15 14 23 23 H 1.08998 * 109.47305 * 305.23285 * 1 2 3 24 24 H 1.09000 * 109.47313 * 65.24099 * 1 2 3 25 25 H 1.09007 * 109.47320 * 185.23558 * 1 2 3 26 26 H 1.09005 * 109.47049 * 239.99626 * 2 1 3 27 27 H 1.08998 * 109.46616 * 119.99869 * 2 1 3 28 28 H 0.97005 * 119.99678 * 356.95231 * 8 7 5 29 29 H 1.00895 * 111.00364 * 37.76691 * 13 3 2 30 30 H 1.09000 * 109.47132 * 305.41807 * 14 13 3 31 31 H 1.08995 * 109.46544 * 65.41583 * 14 13 3 32 32 H 0.96700 * 114.00605 * 300.70044 * 16 15 14 33 33 H 1.08995 * 110.49288 * 335.78598 * 17 15 14 34 34 H 1.09003 * 110.48685 * 98.29767 * 17 15 14 35 35 H 1.08995 * 110.76228 * 156.25636 * 18 17 15 36 36 H 1.09001 * 110.75588 * 279.63520 * 18 17 15 37 37 H 1.09001 * 110.48318 * 80.73678 * 19 18 17 38 38 H 1.08991 * 110.48996 * 203.24347 * 19 18 17 39 39 H 1.09000 * 109.47630 * 59.99707 * 22 20 15 40 40 H 1.08998 * 109.47218 * 179.97438 * 22 20 15 41 41 H 1.09004 * 109.46823 * 299.99360 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1290 1.4428 0.0452 5 6 1.4872 2.1707 1.1979 6 1 0.8167 3.0061 1.0600 7 6 1.8375 1.7706 2.4700 8 7 2.7942 0.8844 2.6406 9 14 0.9533 2.4872 3.9513 10 1 1.5120 1.8974 5.1943 11 1 -0.4955 2.1733 3.8626 12 1 1.1401 3.9602 3.9744 13 7 1.6007 2.1170 -1.2288 14 6 2.5460 1.8779 -2.3275 15 6 2.1294 2.7021 -3.5473 16 8 2.2405 4.0967 -3.2564 17 6 0.6793 2.3594 -3.9464 18 6 0.6906 2.4039 -5.4946 19 6 2.0706 1.7934 -5.8439 20 6 3.0141 2.3422 -4.7538 21 1 3.5283 3.2315 -5.1182 22 6 4.0329 1.2724 -4.3559 23 1 -0.3634 0.5928 0.8394 24 1 -0.3634 0.4304 -0.9332 25 1 -0.3634 -1.0234 0.0938 26 1 1.8933 -0.5139 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 3.2231 0.4794 1.8705 29 1 0.6680 1.8300 -1.4853 30 1 3.5480 2.1721 -2.0152 31 1 2.5423 0.8190 -2.5859 32 1 1.6969 4.3877 -2.5115 33 1 0.4123 1.3626 -3.5954 34 1 -0.0119 3.1014 -3.5465 35 1 -0.1157 1.7959 -5.9046 36 1 0.6213 3.4314 -5.8520 37 1 2.0285 0.7051 -5.7993 38 1 2.3940 2.1214 -6.8317 39 1 3.5083 0.3790 -4.0172 40 1 4.6540 1.0241 -5.2166 41 1 4.6622 1.6515 -3.5507 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000392888354.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:05 Heat of formation + Delta-G solvation = -94.395858 kcal Electronic energy + Delta-G solvation = -18777.303953 eV Core-core repulsion = 16076.103815 eV Total energy + Delta-G solvation = -2701.200137 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.82539 -38.23277 -35.95515 -34.50486 -32.73104 -32.22769 -29.49541 -27.43517 -25.94233 -25.46970 -24.67277 -22.02760 -21.30380 -19.81776 -18.80407 -17.82229 -16.86192 -16.49839 -16.00476 -15.77995 -15.50015 -15.14661 -14.76327 -14.46697 -14.27947 -13.95940 -13.63628 -13.33466 -13.11221 -12.96980 -12.62950 -12.60333 -12.33408 -12.11507 -11.94967 -11.91098 -11.86900 -11.73008 -11.60051 -11.47859 -11.29897 -10.83344 -10.57980 -10.28195 -9.04263 -8.51406 -6.20056 1.55934 1.62750 1.81562 2.60519 3.25433 3.25902 3.37685 3.57187 3.84265 3.94424 4.23792 4.28079 4.33124 4.36717 4.40468 4.41663 4.49440 4.55376 4.63682 4.75841 4.85144 4.89507 4.91147 4.99120 5.00749 5.11273 5.17964 5.18307 5.23839 5.26708 5.36392 5.38408 5.47875 5.53685 5.97113 6.20998 6.54277 6.74261 6.78926 6.88607 7.56082 8.84841 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034627 B = 0.006089 C = 0.006044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.429412 B = 4597.485631 C = 4631.226493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.143 4.143 3 C 0.210 3.790 4 H -0.016 1.016 5 C -0.575 4.575 6 H 0.048 0.952 7 C -0.030 4.030 8 N -0.941 5.941 9 Si 1.109 2.891 10 H -0.290 1.290 11 H -0.269 1.269 12 H -0.277 1.277 13 N -0.679 5.679 14 C 0.041 3.959 15 C 0.139 3.861 16 O -0.572 6.572 17 C -0.147 4.147 18 C -0.116 4.116 19 C -0.113 4.113 20 C -0.085 4.085 21 H 0.075 0.925 22 C -0.146 4.146 23 H 0.049 0.951 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.256 0.744 29 H 0.336 0.664 30 H 0.045 0.955 31 H 0.036 0.964 32 H 0.385 0.615 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.323 0.109 -15.828 16.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.183 4.183 3 C 0.101 3.899 4 H 0.002 0.998 5 C -0.614 4.614 6 H 0.066 0.934 7 C -0.228 4.228 8 N -0.580 5.580 9 Si 0.932 3.068 10 H -0.216 1.216 11 H -0.194 1.194 12 H -0.203 1.203 13 N -0.311 5.311 14 C -0.089 4.089 15 C 0.098 3.902 16 O -0.380 6.380 17 C -0.184 4.184 18 C -0.154 4.154 19 C -0.151 4.151 20 C -0.104 4.104 21 H 0.093 0.907 22 C -0.203 4.203 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.156 0.844 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.234 0.766 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.671 0.692 -14.510 14.983 hybrid contribution 0.018 -0.996 -0.916 1.353 sum -3.653 -0.305 -15.426 15.856 Atomic orbital electron populations 1.21504 0.94719 1.00431 1.01477 1.22064 0.97804 0.99716 0.98700 1.19068 0.92677 0.89472 0.88692 0.99770 1.22074 1.30530 1.16734 0.92042 0.93369 1.26999 0.95749 0.96369 1.03655 1.70933 1.23034 1.30083 1.33906 0.83022 0.75538 0.75654 0.72572 1.21561 1.19419 1.20252 1.60545 1.05029 1.62427 1.03104 1.22778 0.96202 0.97745 0.92176 1.21924 0.95042 0.80743 0.92535 1.86360 1.71855 1.24145 1.55596 1.22986 0.95890 1.01768 0.97800 1.22434 0.97627 1.01381 0.93914 1.22444 0.94085 1.00647 0.97904 1.21725 0.96105 0.98796 0.93817 0.90660 1.21953 0.98619 0.98164 1.01546 0.93177 0.92611 0.93067 0.94560 0.94468 0.93376 0.84433 0.93649 0.94651 0.76551 0.91455 0.91052 0.89923 0.91356 0.90674 0.89880 0.92433 0.90617 0.94007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.84 9.38 71.98 0.68 -4.17 16 2 C -0.14 -6.43 5.47 30.59 0.17 -6.26 16 3 C 0.21 10.35 1.96 44.17 0.09 10.43 16 4 H -0.02 -0.88 7.10 -2.39 -0.02 -0.90 16 5 C -0.58 -31.45 7.30 25.60 0.19 -31.26 16 6 H 0.05 2.66 7.83 -2.91 -0.02 2.63 16 7 C -0.03 -1.68 5.21 84.65 0.44 -1.24 16 8 N -0.94 -56.89 13.07 21.45 0.28 -56.61 16 9 Si 1.11 50.18 29.91 68.60 2.05 52.24 16 10 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 12 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 13 N -0.68 -27.47 5.76 -495.46 -2.85 -30.32 16 14 C 0.04 1.45 3.44 86.30 0.30 1.74 16 15 C 0.14 4.08 1.13 -10.07 -0.01 4.07 16 16 O -0.57 -18.91 12.90 -148.98 -1.92 -20.84 16 17 C -0.15 -3.65 5.10 31.67 0.16 -3.49 16 18 C -0.12 -2.30 6.91 31.89 0.22 -2.08 16 19 C -0.11 -2.18 6.36 31.67 0.20 -1.98 16 20 C -0.09 -2.13 3.31 -10.07 -0.03 -2.17 16 21 H 0.07 1.99 7.96 -2.39 -0.02 1.97 16 22 C -0.15 -3.53 7.87 71.98 0.57 -2.96 16 23 H 0.05 2.19 6.95 -2.39 -0.02 2.17 16 24 H 0.06 1.89 6.55 -2.39 -0.02 1.87 16 25 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 26 H 0.04 1.47 7.58 -2.38 -0.02 1.46 16 27 H 0.04 1.89 6.32 -2.39 -0.02 1.87 16 28 H 0.26 15.67 5.93 -92.70 -0.55 15.12 16 29 H 0.34 12.48 5.20 -89.70 -0.47 12.01 16 30 H 0.04 1.84 6.90 -2.39 -0.02 1.83 16 31 H 0.04 1.21 5.79 -2.39 -0.01 1.20 16 32 H 0.39 12.35 8.69 -74.06 -0.64 11.70 16 33 H 0.07 1.68 7.46 -2.39 -0.02 1.66 16 34 H 0.07 1.80 8.06 -2.39 -0.02 1.78 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.07 1.34 7.83 -2.39 -0.02 1.32 16 38 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.06 1.40 6.56 -2.39 -0.02 1.38 16 40 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.04 1.16 6.92 -2.38 -0.02 1.14 16 Total: -1.00 -62.43 306.77 0.64 -61.79 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: 0.12 Total: 33.10 kcal Atomic # 6 Polarization: -42.32 SS G_CDS: 2.96 Total: -39.36 kcal Atomic # 7 Polarization: -84.36 SS G_CDS: -2.57 Total: -86.93 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -1.92 Total: -20.84 kcal Atomic # 14 Polarization: 50.18 SS G_CDS: 2.05 Total: 52.24 kcal Total: -62.43 0.64 -61.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000392888354.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.603 kcal (2) G-P(sol) polarization free energy of solvation -62.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds