Wall clock time and date at job start Mon Mar 30 2020 04:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47369 * 2 1 4 4 H 1.08998 * 109.46838 * 54.34703 * 3 2 1 5 5 N 1.46892 * 109.47409 * 294.34318 * 3 2 1 6 6 C 1.46909 * 110.99607 * 97.66362 * 5 3 2 7 7 C 1.52999 * 109.47029 * 86.00024 * 6 5 3 8 8 C 1.50704 * 115.54774 * 271.18821 * 7 6 5 9 9 H 1.08000 * 119.99780 * 95.02998 * 8 7 6 10 10 C 1.37874 * 119.99792 * 275.02632 * 8 7 6 11 11 N 1.31517 * 120.00242 * 6.15941 * 10 8 7 12 12 Si 1.86799 * 119.99896 * 186.15935 * 10 8 7 13 13 H 1.48498 * 109.47127 * 89.99897 * 12 10 8 14 14 H 1.48498 * 109.47148 * 210.00282 * 12 10 8 15 15 H 1.48500 * 109.47088 * 329.99772 * 12 10 8 16 16 C 1.52996 * 117.49792 * 125.48207 * 7 6 5 17 17 C 1.52998 * 60.00072 * 252.50783 * 16 7 6 18 18 C 1.53003 * 109.47218 * 174.34287 * 3 2 1 19 19 C 1.52999 * 109.47170 * 180.75494 * 18 3 2 20 20 C 1.53005 * 109.47138 * 300.75311 * 18 3 2 21 21 O 1.42902 * 109.47133 * 60.75251 * 18 3 2 22 22 H 1.09007 * 109.46812 * 305.34176 * 1 2 3 23 23 H 1.09004 * 109.47257 * 65.33383 * 1 2 3 24 24 H 1.08998 * 109.47420 * 185.33725 * 1 2 3 25 25 H 1.09005 * 109.46735 * 240.00410 * 2 1 3 26 26 H 1.09000 * 109.47481 * 120.00623 * 2 1 3 27 27 H 1.00904 * 111.00449 * 221.61559 * 5 3 2 28 28 H 1.09004 * 109.46915 * 205.99473 * 6 5 3 29 29 H 1.08996 * 109.47055 * 325.99824 * 6 5 3 30 30 H 0.96999 * 120.00299 * 185.00559 * 11 10 8 31 31 H 1.08997 * 117.50352 * 359.97438 * 16 7 6 32 32 H 1.09003 * 117.50060 * 145.02351 * 16 7 6 33 33 H 1.09008 * 117.49966 * 252.51472 * 17 16 7 34 34 H 1.08997 * 117.51915 * 107.47916 * 17 16 7 35 35 H 1.08992 * 109.47139 * 59.99860 * 19 18 3 36 36 H 1.09001 * 109.46724 * 300.00140 * 19 18 3 37 37 H 1.08999 * 109.46726 * 180.02562 * 19 18 3 38 38 H 1.09002 * 109.47131 * 300.00039 * 20 18 3 39 39 H 1.09006 * 109.46832 * 59.99716 * 20 18 3 40 40 H 1.08997 * 109.47273 * 179.97438 * 20 18 3 41 41 H 0.96697 * 113.99839 * 65.32948 * 21 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5964 1.9847 0.8350 5 7 1.6651 2.0945 -1.2618 6 6 0.4443 2.8952 -1.0980 7 6 0.8138 4.2904 -0.5903 8 6 0.8837 4.4394 0.9078 9 1 1.8311 4.3398 1.4167 10 6 -0.2617 4.7029 1.6285 11 7 -1.4313 4.7043 1.0271 12 14 -0.1523 5.0579 3.4592 13 1 0.0189 6.5177 3.6709 14 1 -1.3985 4.6037 4.1268 15 1 1.0097 4.3345 4.0351 16 6 0.3158 5.4908 -1.3976 17 6 1.7972 5.1097 -1.4284 18 6 3.5635 1.4448 0.1422 19 6 4.0717 2.8878 0.1611 20 6 3.9549 0.7491 1.4475 21 8 4.1460 0.7490 -0.9617 22 1 -0.3633 0.5945 0.8383 23 1 -0.3634 0.4289 -0.9339 24 1 -0.3634 -1.0232 0.0956 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 2.4228 2.6587 -1.6164 28 1 -0.0653 2.9811 -2.0578 29 1 -0.2150 2.4095 -0.3787 30 1 -2.2283 4.9605 1.5171 31 1 -0.2747 5.2866 -2.2907 32 1 0.0385 6.3887 -0.8453 33 1 2.4946 5.7569 -0.8962 34 1 2.1813 4.6546 -2.3413 35 1 3.6275 3.4184 1.0031 36 1 3.7928 3.3834 -0.7688 37 1 5.1571 2.8893 0.2620 38 1 3.5106 1.2798 2.2895 39 1 3.5927 -0.2790 1.4340 40 1 5.0402 0.7503 1.5486 41 1 4.0076 1.1806 -1.8159 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393979936.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:18 Heat of formation + Delta-G solvation = -42.468372 kcal Electronic energy + Delta-G solvation = -19331.678564 eV Core-core repulsion = 16632.730171 eV Total energy + Delta-G solvation = -2698.948392 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.06886 -36.74721 -34.32658 -32.07722 -31.51802 -31.14558 -27.00959 -26.37212 -25.55753 -23.04694 -21.27132 -20.90344 -19.50778 -18.95622 -16.92627 -15.85844 -15.11039 -14.84225 -14.58751 -14.04156 -13.86545 -13.45057 -12.97859 -12.51519 -12.39891 -12.11493 -11.93437 -11.88202 -11.78866 -11.27359 -11.17769 -11.14497 -11.02980 -10.79706 -10.58532 -10.50762 -10.27121 -10.13147 -9.79224 -9.65911 -9.24848 -8.79195 -8.55056 -8.21691 -7.45644 -6.08891 -4.13696 3.23270 3.31613 3.32759 4.34538 4.58299 4.96416 5.18876 5.21746 5.27709 5.36383 5.42886 5.83676 5.85036 5.96279 6.04055 6.09831 6.12361 6.17979 6.33277 6.39307 6.40506 6.45810 6.53171 6.57332 6.57841 6.64974 6.68022 6.73048 6.85954 6.99838 7.09421 7.14632 7.40942 7.57345 7.79675 7.92557 8.08982 8.19759 8.41219 8.86343 9.50490 10.99549 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019964 B = 0.009718 C = 0.009057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.159110 B = 2880.564393 C = 3090.625461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.103 4.103 3 C 0.060 3.940 4 H 0.084 0.916 5 N -0.682 5.682 6 C 0.095 3.905 7 C 0.020 3.980 8 C -0.492 4.492 9 H 0.058 0.942 10 C 0.073 3.927 11 N -0.874 5.874 12 Si 0.880 3.120 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.274 1.274 16 C -0.157 4.157 17 C -0.215 4.215 18 C 0.123 3.877 19 C -0.181 4.181 20 C -0.138 4.138 21 O -0.562 6.562 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.037 0.963 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.326 0.674 28 H 0.042 0.958 29 H 0.081 0.919 30 H 0.259 0.741 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.582 -5.354 -1.856 8.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.141 4.141 3 C -0.050 4.050 4 H 0.102 0.898 5 N -0.313 5.313 6 C -0.034 4.034 7 C 0.018 3.982 8 C -0.530 4.530 9 H 0.076 0.924 10 C -0.130 4.130 11 N -0.510 5.510 12 Si 0.708 3.292 13 H -0.208 1.208 14 H -0.213 1.213 15 H -0.198 1.198 16 C -0.195 4.195 17 C -0.252 4.252 18 C 0.082 3.918 19 C -0.239 4.239 20 C -0.196 4.196 21 O -0.367 6.367 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.057 0.943 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.145 0.855 28 H 0.060 0.940 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 6.202 -6.371 -1.572 9.029 hybrid contribution 0.016 1.731 1.058 2.028 sum 6.218 -4.640 -0.514 7.776 Atomic orbital electron populations 1.21785 0.96282 0.99862 1.02558 1.21467 0.95533 0.96205 1.00893 1.22260 0.93213 0.95496 0.94026 0.89837 1.60978 1.07739 1.35367 1.27189 1.21837 0.90729 0.92208 0.98625 1.19658 0.96429 0.89248 0.92867 1.20405 0.93408 1.49855 0.89340 0.92441 1.24926 0.95344 0.95074 0.97694 1.70014 0.97979 1.46283 1.36731 0.86781 0.77586 0.78652 0.86177 1.20761 1.21254 1.19844 1.22512 0.93625 1.02288 1.01090 1.22926 0.93384 1.07271 1.01647 1.21439 0.92163 0.90986 0.87195 1.22569 1.00642 0.96674 1.03979 1.21781 1.01329 1.01147 0.95307 1.86439 1.79131 1.53580 1.17596 0.92868 0.91976 0.94340 0.91915 0.92909 0.85468 0.93967 0.90015 0.93063 0.92007 0.90475 0.90799 0.91898 0.90530 0.91861 0.92889 0.91176 0.91742 0.92585 0.77977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 8.56 37.16 0.32 -2.17 16 2 C -0.10 -1.69 5.18 -26.73 -0.14 -1.83 16 3 C 0.06 1.05 1.44 -67.71 -0.10 0.96 16 4 H 0.08 1.74 6.23 -51.93 -0.32 1.41 16 5 N -0.68 -12.18 5.96 -106.72 -0.64 -12.81 16 6 C 0.09 2.01 5.10 -3.82 -0.02 1.99 16 7 C 0.02 0.44 1.48 -155.66 -0.23 0.21 16 8 C -0.49 -12.30 7.44 -34.44 -0.26 -12.55 16 9 H 0.06 1.44 6.54 -52.49 -0.34 1.10 16 10 C 0.07 1.90 5.39 -17.82 -0.10 1.80 16 11 N -0.87 -23.72 12.93 55.43 0.72 -23.01 16 12 Si 0.88 20.35 29.55 -169.99 -5.02 15.33 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 16 C -0.16 -3.56 9.39 -26.73 -0.25 -3.81 16 17 C -0.21 -4.36 8.41 -26.73 -0.22 -4.59 16 18 C 0.12 1.92 0.80 -90.62 -0.07 1.85 16 19 C -0.18 -2.84 8.59 37.16 0.32 -2.52 16 20 C -0.14 -2.00 8.48 37.16 0.32 -1.69 16 21 O -0.56 -8.58 12.43 -35.23 -0.44 -9.01 16 22 H 0.05 0.98 7.87 -51.93 -0.41 0.57 16 23 H 0.06 1.11 6.85 -51.93 -0.36 0.75 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.06 1.04 7.87 -51.93 -0.41 0.63 16 26 H 0.05 0.81 6.12 -51.93 -0.32 0.49 16 27 H 0.33 5.56 4.13 -39.29 -0.16 5.40 16 28 H 0.04 0.90 7.88 -51.93 -0.41 0.49 16 29 H 0.08 1.91 5.70 -51.93 -0.30 1.62 16 30 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 31 H 0.06 1.34 8.04 -51.93 -0.42 0.93 16 32 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 33 H 0.07 1.52 8.14 -51.92 -0.42 1.09 16 34 H 0.06 1.15 7.59 -51.93 -0.39 0.76 16 35 H 0.08 1.34 6.86 -51.93 -0.36 0.99 16 36 H 0.06 1.00 5.53 -51.93 -0.29 0.71 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.90 6.29 -51.93 -0.33 0.58 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.37 4.96 8.12 45.56 0.37 5.33 16 LS Contribution 311.24 15.07 4.69 4.69 Total: -1.00 -25.99 311.24 -7.23 -33.23 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: -6.11 Total: 13.94 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: -0.43 Total: -22.35 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.08 Total: -35.82 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -0.44 Total: -9.01 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -25.99 -7.23 -33.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393979936.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.243 kcal (2) G-P(sol) polarization free energy of solvation -25.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds