Wall clock time and date at job start Mon Mar 30 2020 04:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47372 * 2 1 4 4 H 1.08999 * 109.47254 * 54.97291 * 3 2 1 5 5 C 1.50701 * 109.47054 * 174.96662 * 3 2 1 6 6 H 1.08010 * 119.99979 * 120.00137 * 5 3 2 7 7 C 1.37872 * 120.00347 * 299.99968 * 5 3 2 8 8 N 1.31515 * 120.00063 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00358 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47020 * 0.02562 * 9 7 5 11 11 H 1.48495 * 109.47152 * 120.00067 * 9 7 5 12 12 H 1.48502 * 109.47455 * 240.00579 * 9 7 5 13 13 N 1.46893 * 109.47134 * 294.96646 * 3 2 1 14 14 C 1.46909 * 110.99880 * 152.23432 * 13 3 2 15 15 H 1.08993 * 109.46874 * 29.93277 * 14 13 3 16 16 C 1.53001 * 109.47156 * 269.92754 * 14 13 3 17 17 O 1.42906 * 109.46730 * 63.78058 * 16 14 13 18 18 C 1.53003 * 109.47059 * 149.92934 * 14 13 3 19 19 C 1.54893 * 110.59890 * 68.42056 * 18 14 13 20 20 C 1.54881 * 102.74712 * 156.67402 * 19 18 14 21 21 C 1.54265 * 104.20173 * 322.06046 * 20 19 18 22 22 C 1.53880 * 106.59376 * 23.60830 * 21 20 19 23 23 H 1.09010 * 109.46636 * 65.78733 * 1 2 3 24 24 H 1.08997 * 109.47294 * 185.78592 * 1 2 3 25 25 H 1.08993 * 109.47010 * 305.79659 * 1 2 3 26 26 H 1.09000 * 109.47250 * 239.99632 * 2 1 3 27 27 H 1.09003 * 109.47021 * 120.00308 * 2 1 3 28 28 H 0.96995 * 120.00381 * 179.97438 * 8 7 5 29 29 H 1.00906 * 111.00130 * 28.28494 * 13 3 2 30 30 H 1.08995 * 109.47054 * 183.77565 * 16 14 13 31 31 H 1.09000 * 109.47200 * 303.78349 * 16 14 13 32 32 H 0.96705 * 113.99723 * 179.97438 * 17 16 14 33 33 H 1.09002 * 110.43597 * 305.80558 * 18 14 13 34 34 H 1.09002 * 110.75624 * 274.99361 * 19 18 14 35 35 H 1.09003 * 110.75502 * 38.36054 * 19 18 14 36 36 H 1.08998 * 110.49157 * 203.38067 * 20 19 18 37 37 H 1.09000 * 110.48419 * 80.73811 * 20 19 18 38 38 H 1.09002 * 110.03427 * 264.32632 * 21 20 19 39 39 H 1.08992 * 110.07763 * 142.91548 * 21 20 19 40 40 H 1.09005 * 110.02891 * 240.72005 * 22 21 20 41 41 H 1.08996 * 110.03109 * 119.28826 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6051 1.9816 0.8415 5 6 3.5419 1.4442 0.1247 6 1 4.1477 1.8886 -0.6513 7 6 4.1427 0.8785 1.2292 8 7 3.4051 0.3369 2.1738 9 14 6.0043 0.8800 1.3833 10 1 6.5988 1.5450 0.1960 11 1 6.3987 1.6159 2.6114 12 1 6.4954 -0.5190 1.4653 13 7 1.6522 2.0990 -1.2555 14 6 1.5095 3.5492 -1.0690 15 1 2.1874 3.8829 -0.2836 16 6 0.0682 3.8728 -0.6704 17 8 -0.2220 3.2739 0.5943 18 6 1.8505 4.2674 -2.3762 19 6 0.7777 3.9752 -3.4546 20 6 0.9206 5.1821 -4.4147 21 6 1.1961 6.3784 -3.4805 22 6 1.7874 5.7967 -2.1843 23 1 -0.3633 0.4215 -0.9374 24 1 -0.3634 -1.0224 0.1036 25 1 -0.3633 0.6011 0.8335 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.8278 -0.0614 2.9507 29 1 0.8044 1.6970 -1.6269 30 1 -0.0547 4.9533 -0.5974 31 1 -0.6142 3.4794 -1.4238 32 1 -1.1210 3.4384 0.9103 33 1 2.8374 3.9677 -2.7290 34 1 0.9953 3.0413 -3.9728 35 1 -0.2180 3.9496 -3.0118 36 1 -0.0032 5.3380 -4.9717 37 1 1.7573 5.0301 -5.0966 38 1 0.2665 6.9046 -3.2635 39 1 1.9103 7.0586 -3.9443 40 1 1.1446 6.0406 -1.3384 41 1 2.7889 6.1941 -2.0196 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395086105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:27 Heat of formation + Delta-G solvation = -70.472589 kcal Electronic energy + Delta-G solvation = -18775.587979 eV Core-core repulsion = 16075.425233 eV Total energy + Delta-G solvation = -2700.162746 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.92632 -36.46653 -35.22678 -32.57548 -31.32471 -28.84527 -28.44451 -26.41805 -25.53702 -22.86179 -21.86594 -20.26643 -19.31741 -18.50720 -17.20391 -16.08321 -15.48104 -15.04602 -14.66139 -14.42039 -14.33148 -13.51048 -12.95805 -12.89682 -12.50694 -12.34983 -11.97989 -11.61676 -11.35875 -11.12873 -11.06227 -10.87496 -10.84468 -10.58350 -10.50089 -10.43245 -10.25834 -9.90853 -9.80392 -9.49374 -9.41659 -9.24277 -8.89325 -8.20436 -6.99224 -5.81994 -3.85046 3.38443 3.45994 3.51285 4.55258 4.61392 4.80030 4.90096 4.98051 5.34481 5.43084 5.46490 5.63298 5.71221 5.76428 5.83135 5.88177 5.90194 6.01835 6.04108 6.15276 6.25053 6.31913 6.35073 6.40878 6.51192 6.53859 6.61008 6.80501 6.82437 7.03722 7.35078 7.39340 7.78814 7.95164 8.06566 8.08383 8.53214 8.59758 8.95233 9.24331 9.78760 11.23052 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022680 B = 0.007627 C = 0.006485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.251106 B = 3670.111925 C = 4316.539955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 C 0.217 3.783 4 H 0.029 0.971 5 C -0.489 4.489 6 H 0.058 0.942 7 C 0.053 3.947 8 N -0.896 5.896 9 Si 0.890 3.110 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.287 1.287 13 N -0.675 5.675 14 C 0.103 3.897 15 H 0.084 0.916 16 C 0.045 3.955 17 O -0.553 6.553 18 C -0.073 4.073 19 C -0.122 4.122 20 C -0.125 4.125 21 C -0.122 4.122 22 C -0.128 4.128 23 H 0.029 0.971 24 H 0.029 0.971 25 H 0.049 0.951 26 H 0.033 0.967 27 H 0.096 0.904 28 H 0.256 0.744 29 H 0.315 0.685 30 H 0.037 0.963 31 H 0.040 0.960 32 H 0.362 0.638 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.974 8.733 -8.444 14.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.163 4.163 3 C 0.110 3.890 4 H 0.046 0.954 5 C -0.528 4.528 6 H 0.076 0.924 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.213 1.213 13 N -0.304 5.304 14 C -0.009 4.009 15 H 0.103 0.897 16 C -0.034 4.034 17 O -0.356 6.356 18 C -0.093 4.093 19 C -0.159 4.159 20 C -0.163 4.163 21 C -0.160 4.160 22 C -0.166 4.166 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.068 0.932 26 H 0.052 0.948 27 H 0.114 0.886 28 H 0.066 0.934 29 H 0.132 0.868 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.207 0.793 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.652 8.468 -8.560 13.756 hybrid contribution -0.444 0.236 0.683 0.848 sum -7.096 8.705 -7.877 13.717 Atomic orbital electron populations 1.21817 0.99596 0.98947 0.99675 1.21748 0.91309 1.00809 1.02455 1.19257 0.94575 0.89752 0.85444 0.95383 1.21346 0.91762 1.35621 1.04076 0.92369 1.24941 0.97706 0.96023 0.95995 1.69900 1.34307 1.39774 1.09673 0.86574 0.86436 0.77447 0.77704 1.19912 1.21394 1.21295 1.60789 1.36547 1.00530 1.32576 1.21443 0.92456 0.91182 0.95800 0.89735 1.23252 0.99297 0.95793 0.85086 1.86785 1.34621 1.77401 1.36812 1.21955 0.99792 0.92776 0.94741 1.22622 0.99023 0.97775 0.96502 1.22362 1.00783 0.95408 0.97716 1.22111 1.00137 0.97638 0.96113 1.22323 1.00864 0.96077 0.97305 0.95163 0.95166 0.93230 0.94777 0.88584 0.93404 0.86763 0.94468 0.94236 0.79289 0.89689 0.91245 0.91838 0.92423 0.91883 0.92499 0.92383 0.91822 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.64 37.16 0.36 -2.56 16 2 C -0.12 -3.07 5.34 -26.73 -0.14 -3.21 16 3 C 0.22 5.53 1.59 -68.87 -0.11 5.42 16 4 H 0.03 0.81 6.17 -51.93 -0.32 0.48 16 5 C -0.49 -13.90 8.67 -34.44 -0.30 -14.20 16 6 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 7 C 0.05 1.52 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -26.40 11.29 55.43 0.63 -25.77 16 9 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 10 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 13 N -0.67 -14.39 5.91 -100.95 -0.60 -14.98 16 14 C 0.10 1.91 2.08 -67.71 -0.14 1.77 16 15 H 0.08 1.88 7.67 -51.93 -0.40 1.48 16 16 C 0.05 0.71 5.67 37.16 0.21 0.92 16 17 O -0.55 -9.73 11.60 -35.23 -0.41 -10.14 16 18 C -0.07 -1.14 2.90 -88.96 -0.26 -1.40 16 19 C -0.12 -1.62 6.03 -24.74 -0.15 -1.77 16 20 C -0.13 -1.41 6.83 -25.08 -0.17 -1.58 16 21 C -0.12 -1.36 6.80 -25.61 -0.17 -1.54 16 22 C -0.13 -1.68 6.20 -25.61 -0.16 -1.84 16 23 H 0.03 0.55 6.64 -51.92 -0.34 0.21 16 24 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.05 1.03 8.00 -51.93 -0.42 0.62 16 26 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 28 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.31 6.30 6.15 -39.29 -0.24 6.06 16 30 H 0.04 0.52 6.19 -51.93 -0.32 0.20 16 31 H 0.04 0.57 6.11 -51.93 -0.32 0.26 16 32 H 0.36 4.53 9.12 45.56 0.42 4.94 16 33 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.81 5.61 -51.93 -0.29 0.52 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.83 5.94 -51.93 -0.31 0.52 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 309.67 15.07 4.67 4.67 Total: -1.00 -30.27 309.67 -8.07 -38.34 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -6.20 Total: 9.32 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -1.13 Total: -18.56 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.03 Total: -40.75 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -0.41 Total: -10.14 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.27 -8.07 -38.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395086105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.135 kcal (2) G-P(sol) polarization free energy of solvation -30.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds