Wall clock time and date at job start Mon Mar 30 2020 04:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47495 * 2 1 4 4 N 1.46909 * 109.47106 * 120.00117 * 2 1 3 5 5 C 1.46900 * 110.99965 * 167.03497 * 4 2 1 6 6 C 1.50699 * 109.47019 * 293.95014 * 5 4 2 7 7 H 1.08002 * 119.99981 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99999 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99708 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99987 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47283 * 59.99981 * 10 8 6 12 12 H 1.48500 * 109.46896 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.46943 * 300.00001 * 10 8 6 14 14 C 1.46896 * 110.99581 * 290.98891 * 4 2 1 15 15 C 1.53002 * 109.46983 * 164.12860 * 14 4 2 16 16 C 1.53000 * 109.47368 * 177.62295 * 15 14 4 17 17 O 1.42899 * 112.90665 * 53.74716 * 16 15 14 18 18 C 1.53783 * 113.61392 * 282.49588 * 16 15 14 19 19 C 1.53777 * 87.08372 * 220.02061 * 18 16 15 20 20 C 1.53779 * 87.08091 * 25.43163 * 19 18 16 21 21 H 1.08992 * 109.47145 * 306.32582 * 1 2 3 22 22 H 1.09003 * 109.46780 * 66.32618 * 1 2 3 23 23 H 1.08996 * 109.47373 * 186.32419 * 1 2 3 24 24 H 1.09003 * 109.47225 * 239.99855 * 2 1 3 25 25 H 1.08993 * 109.47548 * 179.97438 * 3 2 1 26 26 H 1.08996 * 109.47144 * 300.00435 * 3 2 1 27 27 H 1.09003 * 109.47002 * 59.99718 * 3 2 1 28 28 H 1.08994 * 109.47333 * 53.95210 * 5 4 2 29 29 H 1.09002 * 109.46518 * 173.95846 * 5 4 2 30 30 H 0.97003 * 119.99673 * 179.97438 * 9 8 6 31 31 H 1.09003 * 109.47706 * 44.13050 * 14 4 2 32 32 H 1.09003 * 109.47293 * 284.12199 * 14 4 2 33 33 H 1.09007 * 109.47309 * 57.61901 * 15 14 4 34 34 H 1.09004 * 109.47355 * 297.62172 * 15 14 4 35 35 H 0.96699 * 114.00353 * 311.25176 * 17 16 15 36 36 H 1.09002 * 113.61324 * 334.56991 * 18 16 15 37 37 H 1.09004 * 113.61483 * 105.46496 * 18 16 15 38 38 H 1.09003 * 113.61136 * 270.88584 * 19 18 16 39 39 H 1.08990 * 113.61627 * 139.97955 * 19 18 16 40 40 H 1.08996 * 113.61959 * 220.02237 * 20 19 18 41 41 H 1.09007 * 113.61570 * 89.11568 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6926 1.1995 5 6 3.4552 -0.9844 1.0897 6 6 3.6818 -1.9814 -0.0175 7 1 2.8433 -2.3599 -0.5832 8 6 4.9596 -2.4102 -0.3081 9 7 5.9805 -1.9496 0.3812 10 14 5.2405 -3.6455 -1.6810 11 1 4.7516 -3.0796 -2.9638 12 1 6.6915 -3.9416 -1.7911 13 1 4.5018 -4.8978 -1.3789 14 6 1.7320 0.0863 2.4113 15 6 1.8845 -0.8100 3.6418 16 6 1.6429 0.0154 4.9072 17 8 0.3953 0.7118 4.8872 18 6 2.8365 0.9010 5.3023 19 6 2.5380 0.5167 6.7610 20 6 1.8922 -0.7649 6.2087 21 1 -0.3633 0.6087 0.8279 22 1 -0.3633 0.4127 -0.9412 23 1 -0.3634 -1.0214 0.1132 24 1 1.8933 -0.5139 -0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.9969 -0.0652 0.8673 29 1 3.8146 -1.3994 2.0314 30 1 6.8794 -2.2516 0.1769 31 1 0.7121 0.4683 2.3642 32 1 2.4297 0.9209 2.4810 33 1 2.8919 -1.2257 3.6660 34 1 1.1579 -1.6211 3.5929 35 1 0.2328 1.2045 4.0712 36 1 3.7949 0.5290 4.9401 37 1 2.6844 1.9592 5.0895 38 1 1.8310 1.1850 7.2526 39 1 3.4325 0.3334 7.3561 40 1 0.9776 -1.0517 6.7277 41 1 2.5924 -1.5925 6.0943 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396929317.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:18 Heat of formation + Delta-G solvation = -38.031220 kcal Electronic energy + Delta-G solvation = -18460.462899 eV Core-core repulsion = 15761.706916 eV Total energy + Delta-G solvation = -2698.755983 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.64904 -37.61135 -34.49015 -32.79302 -31.96312 -29.54685 -26.69285 -26.53781 -25.62432 -24.03798 -22.24415 -21.29116 -19.50057 -18.59631 -16.47643 -16.22601 -15.38764 -15.18870 -14.84886 -14.29898 -14.10178 -13.89875 -13.34425 -12.97729 -12.80698 -12.32671 -12.21523 -11.99815 -11.63899 -11.43742 -11.32853 -11.08380 -10.92312 -10.88297 -10.74929 -10.71607 -10.56305 -10.28075 -10.01678 -9.81609 -9.60773 -9.38075 -9.13072 -8.42174 -7.17888 -6.02623 -4.03179 3.33026 3.37218 3.40219 4.19113 4.42035 4.65085 4.74757 4.90766 5.01185 5.21670 5.32980 5.48942 5.59866 5.65685 5.74734 5.81624 5.88734 5.90513 5.99525 6.00946 6.03116 6.09363 6.11098 6.26428 6.28067 6.32265 6.45897 6.51535 6.62380 6.71397 6.79471 6.89139 7.33904 7.42477 7.77996 7.82019 8.13362 8.25020 8.58144 9.04392 9.60736 11.08101 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022268 B = 0.006769 C = 0.005682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.081784 B = 4135.244933 C = 4926.665266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.079 3.921 3 C -0.179 4.179 4 N -0.529 5.529 5 C 0.191 3.809 6 C -0.506 4.506 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.054 3.946 15 C -0.131 4.131 16 C 0.110 3.890 17 O -0.548 6.548 18 C -0.165 4.165 19 C -0.136 4.136 20 C -0.127 4.127 21 H 0.044 0.956 22 H 0.047 0.953 23 H 0.059 0.941 24 H 0.092 0.908 25 H 0.060 0.940 26 H 0.047 0.953 27 H 0.045 0.955 28 H -0.007 1.007 29 H 0.031 0.969 30 H 0.261 0.739 31 H 0.058 0.942 32 H 0.026 0.974 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.376 0.624 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.995 5.902 6.883 12.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.030 4.030 3 C -0.238 4.238 4 N -0.252 5.252 5 C 0.066 3.934 6 C -0.545 4.545 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.075 4.075 15 C -0.169 4.169 16 C 0.069 3.931 17 O -0.354 6.354 18 C -0.203 4.203 19 C -0.174 4.174 20 C -0.164 4.164 21 H 0.063 0.937 22 H 0.066 0.934 23 H 0.078 0.922 24 H 0.110 0.890 25 H 0.079 0.921 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.011 0.989 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.224 0.776 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.091 5.164 7.523 12.195 hybrid contribution 0.869 0.396 -1.384 1.681 sum -7.221 5.560 6.139 10.989 Atomic orbital electron populations 1.21851 0.96170 1.01690 1.00023 1.21597 0.93719 0.91912 0.95726 1.22432 1.02256 0.98657 1.00488 1.62313 1.20778 1.42506 0.99651 1.19758 0.80794 0.95283 0.97562 1.21140 0.92389 1.24357 1.16620 0.92019 1.24970 0.96079 0.96751 0.96740 1.69946 0.98998 1.44234 1.40693 0.86599 0.76880 0.81791 0.82372 1.20323 1.21407 1.20198 1.21963 0.99036 0.94920 0.91572 1.22101 1.03691 0.98709 0.92372 1.22247 0.83479 0.92401 0.95019 1.86399 1.37431 1.68159 1.43444 1.23618 0.99606 1.00377 0.96682 1.22751 1.00396 0.97761 0.96448 1.23016 1.00999 0.97134 0.95258 0.93746 0.93389 0.92201 0.88989 0.92134 0.93347 0.93586 0.98925 0.95121 0.92944 0.92402 0.95620 0.90060 0.90908 0.77580 0.89139 0.91483 0.90281 0.91671 0.91015 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.08 37.16 0.34 -1.81 16 2 C 0.08 1.49 2.77 -67.71 -0.19 1.30 16 3 C -0.18 -3.07 8.45 37.16 0.31 -2.76 16 4 N -0.53 -10.92 4.38 -228.08 -1.00 -11.92 16 5 C 0.19 4.81 4.47 -4.98 -0.02 4.79 16 6 C -0.51 -13.97 8.33 -34.44 -0.29 -14.26 16 7 H 0.06 1.69 7.21 -52.49 -0.38 1.32 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.37 13.29 55.43 0.74 -25.63 16 10 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 C 0.05 0.92 3.10 -3.83 -0.01 0.90 16 15 C -0.13 -2.15 4.95 -26.73 -0.13 -2.29 16 16 C 0.11 1.56 1.39 -89.81 -0.12 1.44 16 17 O -0.55 -7.66 13.40 -35.23 -0.47 -8.13 16 18 C -0.17 -2.23 7.28 -25.92 -0.19 -2.42 16 19 C -0.14 -1.65 8.02 -25.92 -0.21 -1.86 16 20 C -0.13 -1.65 7.47 -25.92 -0.19 -1.84 16 21 H 0.04 0.62 6.65 -51.93 -0.35 0.27 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.09 1.96 6.61 -51.93 -0.34 1.61 16 25 H 0.06 1.18 6.70 -51.93 -0.35 0.83 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.71 6.66 -51.93 -0.35 0.36 16 28 H -0.01 -0.19 6.55 -51.93 -0.34 -0.53 16 29 H 0.03 0.83 6.36 -51.93 -0.33 0.50 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.06 0.87 4.91 -51.93 -0.26 0.61 16 32 H 0.03 0.45 7.01 -51.93 -0.36 0.09 16 33 H 0.08 1.50 6.43 -51.93 -0.33 1.17 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.38 4.32 7.19 45.56 0.33 4.65 16 36 H 0.09 1.29 8.04 -51.93 -0.42 0.88 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.09 1.18 8.10 -51.92 -0.42 0.76 16 LS Contribution 314.56 15.07 4.74 4.74 Total: -1.00 -29.24 314.56 -8.23 -37.47 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -6.41 Total: 4.30 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -0.80 Total: -17.33 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: -0.26 Total: -37.55 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.47 Total: -8.13 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -29.24 -8.23 -37.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396929317.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.562 kcal (2) G-P(sol) polarization free energy of solvation -29.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds