Wall clock time and date at job start Mon Mar 30 2020 03:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47198 * 2 1 4 4 C 1.52993 * 109.47424 * 120.00455 * 2 1 3 5 5 O 1.42898 * 109.47159 * 64.99944 * 4 2 1 6 6 C 1.42898 * 114.00148 * 180.02562 * 5 4 2 7 7 C 1.52995 * 109.47285 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47016 * 65.00142 * 7 6 5 9 9 C 1.47448 * 111.00041 * 69.15688 * 8 7 6 10 10 C 1.54321 * 107.23159 * 123.26094 * 9 8 7 11 11 C 1.55422 * 103.04810 * 22.28093 * 10 9 8 12 12 H 1.08998 * 111.00401 * 82.38939 * 11 10 9 13 13 C 1.50702 * 111.10698 * 206.29460 * 11 10 9 14 14 H 1.08002 * 119.99583 * 112.17314 * 13 11 10 15 15 C 1.37874 * 120.00111 * 292.17739 * 13 11 10 16 16 N 1.31511 * 119.99903 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 119.99891 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47159 * 59.99966 * 17 15 13 19 19 H 1.48503 * 109.46989 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47346 * 299.99802 * 17 15 13 21 21 C 1.47846 * 111.00020 * 189.99819 * 8 7 6 22 22 H 1.09004 * 109.46675 * 299.99162 * 1 2 3 23 23 H 1.08995 * 109.47671 * 59.99567 * 1 2 3 24 24 H 1.09000 * 109.47205 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46574 * 240.00402 * 2 1 3 26 26 H 1.08993 * 109.47537 * 180.02562 * 3 2 1 27 27 H 1.08995 * 109.47163 * 300.00744 * 3 2 1 28 28 H 1.09005 * 109.47129 * 60.00005 * 3 2 1 29 29 H 1.08996 * 109.47037 * 304.99944 * 4 2 1 30 30 H 1.08997 * 109.47332 * 184.99628 * 4 2 1 31 31 H 1.09002 * 109.47310 * 59.99307 * 6 5 4 32 32 H 1.08997 * 109.47275 * 300.00052 * 6 5 4 33 33 H 1.09001 * 109.47391 * 304.99813 * 7 6 5 34 34 H 1.09001 * 109.47271 * 184.99726 * 7 6 5 35 35 H 1.08999 * 109.88737 * 242.66366 * 9 8 7 36 36 H 1.09000 * 109.88899 * 3.85249 * 9 8 7 37 37 H 1.09004 * 110.70290 * 140.66846 * 10 9 8 38 38 H 1.09004 * 110.70313 * 263.89914 * 10 9 8 39 39 H 0.97006 * 120.00009 * 180.02562 * 16 15 13 40 40 H 1.09002 * 110.37464 * 332.46590 * 21 8 7 41 41 H 1.08999 * 110.37318 * 94.69366 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 8 1.6621 -2.0982 1.1918 6 6 2.0915 -2.8662 2.3177 7 6 1.6336 -4.3164 2.1505 8 7 2.3110 -4.9133 0.9918 9 6 3.7497 -5.0969 1.2576 10 6 4.0659 -6.5929 1.0486 11 6 2.9108 -7.0700 0.1247 12 1 3.1225 -6.8351 -0.9184 13 6 2.6478 -8.5433 0.3013 14 1 1.7231 -8.8769 0.7486 15 6 3.5877 -9.4653 -0.1079 16 7 4.7135 -9.0590 -0.6530 17 14 3.2620 -11.2915 0.1117 18 1 2.0378 -11.6698 -0.6389 19 1 4.4185 -12.0663 -0.4056 20 1 3.0707 -11.5903 1.5537 21 6 1.7235 -6.2271 0.6533 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6055 -0.2619 2.1368 30 1 3.1264 -0.6444 1.2950 31 1 1.6578 -2.4511 3.2275 32 1 3.1789 -2.8338 2.3863 33 1 0.5552 -4.3411 1.9934 34 1 1.8830 -4.8820 3.0483 35 1 4.3349 -4.4938 0.5635 36 1 3.9767 -4.8098 2.2843 37 1 5.0301 -6.7177 0.5558 38 1 4.0453 -7.1274 1.9984 39 1 5.3746 -9.7076 -0.9413 40 1 1.2944 -6.6911 1.5414 41 1 0.9636 -6.1150 -0.1201 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397628038.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:05 Heat of formation + Delta-G solvation = -64.158760 kcal Electronic energy + Delta-G solvation = -17678.447661 eV Core-core repulsion = 14978.558702 eV Total energy + Delta-G solvation = -2699.888958 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.57107 -37.56744 -35.06471 -33.12595 -31.06526 -28.17666 -27.81718 -27.21961 -25.66073 -24.14211 -22.21592 -20.26293 -19.65082 -19.40165 -16.61541 -16.51412 -15.91923 -15.01766 -14.84171 -14.71209 -14.34640 -13.91076 -13.23776 -12.96474 -12.58856 -12.43094 -12.34200 -12.18140 -11.93917 -11.78338 -11.22859 -11.05088 -10.97284 -10.89369 -10.79988 -10.65993 -10.48010 -10.40671 -10.09634 -9.61459 -9.37893 -9.16091 -8.83256 -8.36550 -7.49413 -6.00144 -4.03307 3.32790 3.37461 3.39907 3.82083 4.43272 4.72521 4.80021 4.85297 5.06650 5.31511 5.34269 5.37625 5.43547 5.47601 5.52652 5.61989 5.67151 5.75863 5.82124 5.86131 5.89913 5.99006 6.09377 6.24188 6.25409 6.30322 6.32250 6.55014 6.57586 6.90081 7.16822 7.20657 7.43374 7.63672 7.76276 7.81958 7.94934 8.05696 8.45975 8.99282 9.60663 11.09900 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.049392 B = 0.004061 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.754400 B = 6892.550873 C = 6923.702136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 C -0.145 4.145 4 C 0.065 3.935 5 O -0.366 6.366 6 C 0.071 3.929 7 C 0.053 3.947 8 N -0.524 5.524 9 C 0.039 3.961 10 C -0.121 4.121 11 C 0.049 3.951 12 H 0.041 0.959 13 C -0.515 4.515 14 H 0.055 0.945 15 C 0.064 3.936 16 N -0.888 5.888 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.278 1.278 21 C 0.047 3.953 22 H 0.048 0.952 23 H 0.050 0.950 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.040 0.960 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.044 0.956 35 H 0.061 0.939 36 H 0.033 0.967 37 H 0.068 0.932 38 H 0.046 0.954 39 H 0.260 0.740 40 H 0.033 0.967 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.503 16.622 4.877 17.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 C -0.202 4.202 4 C -0.012 4.012 5 O -0.285 6.285 6 C -0.006 4.006 7 C -0.076 4.076 8 N -0.248 5.248 9 C -0.088 4.088 10 C -0.160 4.160 11 C 0.030 3.970 12 H 0.059 0.941 13 C -0.553 4.553 14 H 0.073 0.927 15 C -0.138 4.138 16 N -0.526 5.526 17 Si 0.719 3.281 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.204 1.204 21 C -0.080 4.080 22 H 0.067 0.933 23 H 0.070 0.930 24 H 0.084 0.916 25 H 0.099 0.901 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.093 0.907 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.051 0.949 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.051 0.949 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.507 16.828 4.235 17.928 hybrid contribution 0.242 -1.430 1.143 1.846 sum -4.265 15.397 5.377 16.858 Atomic orbital electron populations 1.21767 0.94728 1.02598 1.00896 1.21076 0.96665 0.95285 0.98404 1.21783 1.01030 0.95541 1.01882 1.22499 0.98125 0.83156 0.97407 1.88014 1.78088 1.18981 1.43375 1.22539 0.98311 0.91845 0.87913 1.22203 0.99785 0.92436 0.93135 1.63591 1.02726 1.24670 1.33848 1.22908 0.89108 0.98976 0.97829 1.22782 1.02048 0.91096 1.00094 1.19774 0.88578 0.93288 0.95322 0.94104 1.21015 1.03189 0.90550 1.40582 0.92688 1.24974 0.95157 0.98768 0.94914 1.69958 1.07692 1.34079 1.40911 0.86680 0.77699 0.85321 0.78406 1.20218 1.21318 1.20364 1.23164 0.99140 0.87108 0.98614 0.93288 0.93044 0.91572 0.90111 0.92606 0.92195 0.92786 0.94164 0.93864 0.93995 0.93545 0.90695 0.93830 0.92034 0.94885 0.91285 0.93492 0.92986 0.94876 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.09 37.16 0.34 -1.14 16 2 C -0.10 -1.03 3.16 -90.62 -0.29 -1.32 16 3 C -0.14 -1.22 9.19 37.16 0.34 -0.87 16 4 C 0.07 0.78 5.32 37.15 0.20 0.98 16 5 O -0.37 -5.60 9.82 -35.23 -0.35 -5.95 16 6 C 0.07 1.01 6.03 37.16 0.22 1.24 16 7 C 0.05 0.87 4.92 -3.83 -0.02 0.86 16 8 N -0.52 -10.46 5.11 -231.24 -1.18 -11.65 16 9 C 0.04 0.79 6.13 -2.83 -0.02 0.77 16 10 C -0.12 -2.88 5.91 -24.75 -0.15 -3.03 16 11 C 0.05 1.27 2.85 -89.48 -0.26 1.02 16 12 H 0.04 1.16 8.14 -51.93 -0.42 0.73 16 13 C -0.51 -14.32 8.50 -34.44 -0.29 -14.62 16 14 H 0.05 1.50 7.77 -52.49 -0.41 1.09 16 15 C 0.06 1.79 5.38 -17.82 -0.10 1.69 16 16 N -0.89 -25.83 12.63 55.43 0.70 -25.13 16 17 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 21 C 0.05 1.03 6.12 -2.30 -0.01 1.02 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.80 7.82 -51.93 -0.41 0.40 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.66 7.00 -51.93 -0.36 0.30 16 33 H 0.07 1.20 8.08 -51.93 -0.42 0.78 16 34 H 0.04 0.69 7.98 -51.93 -0.41 0.28 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.03 0.59 6.91 -51.93 -0.36 0.23 16 37 H 0.07 1.75 7.85 -51.93 -0.41 1.34 16 38 H 0.05 1.14 8.04 -51.93 -0.42 0.72 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.03 0.72 7.68 -51.93 -0.40 0.32 16 41 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 326.17 15.07 4.92 4.92 Total: -1.00 -29.21 326.17 -8.76 -37.98 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -7.80 Total: -3.16 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -0.03 Total: -13.41 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: -0.48 Total: -36.77 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.35 Total: -5.95 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.21 -8.76 -37.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397628038.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.182 kcal (2) G-P(sol) polarization free energy of solvation -29.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds