Wall clock time and date at job start Mon Mar 30 2020 03:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 O 1.42899 * 109.47662 * 184.99831 * 4 2 1 6 6 C 1.42902 * 114.00146 * 179.97438 * 5 4 2 7 7 C 1.53002 * 109.46725 * 180.02562 * 6 5 4 8 8 N 1.46900 * 109.46730 * 65.00798 * 7 6 5 9 9 C 1.48537 * 111.00286 * 52.60128 * 8 7 6 10 10 C 1.54937 * 103.22592 * 159.71758 * 9 8 7 11 11 C 1.54594 * 102.92567 * 322.58602 * 10 9 8 12 12 H 1.09004 * 110.30602 * 263.04598 * 11 10 9 13 13 C 1.50694 * 110.39551 * 140.91418 * 11 10 9 14 14 H 1.07997 * 120.00405 * 244.23247 * 13 11 10 15 15 C 1.37883 * 119.99890 * 64.23414 * 13 11 10 16 16 N 1.31517 * 119.99865 * 0.02562 * 15 13 11 17 17 Si 1.86792 * 120.00119 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47494 * 90.00210 * 17 15 13 19 19 H 1.48497 * 109.47267 * 210.00244 * 17 15 13 20 20 H 1.48499 * 109.47245 * 329.99924 * 17 15 13 21 21 C 1.47913 * 110.99686 * 169.99491 * 8 7 6 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 26 26 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 30 30 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 31 31 H 1.08991 * 109.47550 * 300.00421 * 6 5 4 32 32 H 1.09003 * 109.46883 * 60.00897 * 6 5 4 33 33 H 1.09000 * 109.46610 * 184.99956 * 7 6 5 34 34 H 1.08997 * 109.47451 * 305.00208 * 7 6 5 35 35 H 1.09003 * 110.66328 * 278.15298 * 9 8 7 36 36 H 1.08998 * 110.66450 * 41.28479 * 9 8 7 37 37 H 1.08998 * 110.72332 * 204.22113 * 10 9 8 38 38 H 1.08999 * 110.87366 * 81.01593 * 10 9 8 39 39 H 0.96995 * 120.00160 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.91659 * 333.50955 * 21 8 7 41 41 H 1.09001 * 109.91247 * 94.60614 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 3.4642 -0.8238 -1.1921 6 6 4.0449 -1.4857 -2.3176 7 6 5.5648 -1.5382 -2.1498 8 7 5.9008 -2.3757 -0.9907 9 6 5.2446 -3.7049 -1.0861 10 6 6.0905 -4.5870 -0.1339 11 6 7.5275 -4.0663 -0.3654 12 1 8.0489 -4.7008 -1.0822 13 6 8.2847 -4.0179 0.9366 14 1 8.6175 -3.0700 1.3329 15 6 8.5527 -5.1839 1.6220 16 7 8.1479 -6.3383 1.1392 17 14 9.4906 -5.1239 3.2363 18 1 8.5319 -4.9760 4.3607 19 1 10.2635 -6.3804 3.4068 20 1 10.4222 -3.9675 3.2248 21 6 7.3539 -2.6465 -0.9358 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6768 1.9562 0.8900 29 1 1.6054 -1.7198 -1.2952 30 1 1.7517 -0.1583 -2.1369 31 1 3.6519 -2.5000 -2.3852 32 1 3.7982 -0.9389 -3.2277 33 1 6.0148 -1.9627 -3.0473 34 1 5.9482 -0.5300 -1.9931 35 1 4.2115 -3.6494 -0.7430 36 1 5.2923 -4.0850 -2.1066 37 1 6.0119 -5.6384 -0.4104 38 1 5.7889 -4.4389 0.9031 39 1 8.3367 -7.1586 1.6212 40 1 7.7794 -2.5942 -1.9379 41 1 7.8426 -1.9200 -0.2866 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397628039.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:08 Heat of formation + Delta-G solvation = -79.741340 kcal Electronic energy + Delta-G solvation = -17825.846376 eV Core-core repulsion = 15125.281706 eV Total energy + Delta-G solvation = -2700.564670 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.04471 -38.83900 -36.09467 -35.01858 -32.79409 -29.99617 -29.27084 -27.97701 -26.68638 -25.99348 -23.72968 -21.38269 -21.27282 -20.98879 -18.58041 -17.63360 -17.33538 -16.56732 -16.29393 -16.03100 -15.70413 -15.11995 -14.72193 -14.41747 -14.01749 -13.90370 -13.59875 -13.22809 -13.04866 -13.04002 -12.77455 -12.72347 -12.59274 -12.31995 -11.97794 -11.95575 -11.76587 -11.71937 -11.56438 -11.41717 -11.14929 -10.83520 -10.51255 -10.39109 -9.15372 -8.12601 -6.20891 1.41432 1.42530 1.52717 2.44416 2.80037 3.17071 3.24767 3.92371 3.98178 4.07969 4.14309 4.26445 4.34105 4.39385 4.43541 4.51893 4.55122 4.59589 4.65537 4.70832 4.80846 4.85652 4.89951 4.96038 5.02801 5.05797 5.09089 5.24561 5.26136 5.36919 5.43462 5.48140 5.56042 5.73007 5.85004 6.19319 6.28104 6.38993 6.50118 6.87073 7.45569 8.97174 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029137 B = 0.004791 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.758741 B = 5842.783936 C = 6207.026138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 C -0.139 4.139 4 C 0.061 3.939 5 O -0.394 6.394 6 C 0.068 3.932 7 C 0.045 3.955 8 N -0.520 5.520 9 C 0.047 3.953 10 C -0.084 4.084 11 C 0.030 3.970 12 H 0.003 0.997 13 C -0.526 4.526 14 H 0.052 0.948 15 C 0.012 3.988 16 N -0.921 5.921 17 Si 0.955 3.045 18 H -0.278 1.278 19 H -0.282 1.282 20 H -0.268 1.268 21 C 0.055 3.945 22 H 0.066 0.934 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.042 0.958 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.044 0.956 37 H 0.040 0.960 38 H 0.032 0.968 39 H 0.260 0.740 40 H 0.035 0.965 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.785 11.547 -7.064 19.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.117 4.117 3 C -0.196 4.196 4 C -0.015 4.015 5 O -0.314 6.314 6 C -0.009 4.009 7 C -0.083 4.083 8 N -0.245 5.245 9 C -0.080 4.080 10 C -0.123 4.123 11 C 0.011 3.989 12 H 0.021 0.979 13 C -0.565 4.565 14 H 0.070 0.930 15 C -0.187 4.187 16 N -0.560 5.560 17 Si 0.780 3.220 18 H -0.203 1.203 19 H -0.207 1.207 20 H -0.192 1.192 21 C -0.073 4.073 22 H 0.085 0.915 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.845 11.741 -6.431 19.258 hybrid contribution 0.888 -0.980 0.013 1.323 sum -12.957 10.760 -6.418 18.024 Atomic orbital electron populations 1.21743 0.92664 1.02344 1.02912 1.21114 0.96711 0.96773 0.97117 1.21728 1.00740 0.95130 1.02044 1.22687 0.80909 0.99307 0.98615 1.88002 1.20504 1.78746 1.44124 1.22588 0.92470 0.96712 0.89092 1.22402 0.95073 0.98848 0.91942 1.64728 1.06613 1.13261 1.39899 1.23152 0.98192 0.89000 0.97696 1.22154 0.96203 0.96760 0.97167 1.19484 0.93346 0.91099 0.94925 0.97916 1.21525 1.35363 0.92813 1.06758 0.93012 1.25750 0.96746 0.95188 1.01004 1.70082 1.47642 0.98082 1.40212 0.85602 0.78768 0.77567 0.80017 1.20337 1.20734 1.19205 1.22860 0.88247 0.98019 0.98128 0.91468 0.91442 0.92379 0.92363 0.93859 0.91914 0.92128 0.93600 0.92212 0.93264 0.90818 0.92466 0.90230 0.90706 0.93825 0.94123 0.94899 0.93077 0.94634 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.19 71.98 0.66 -1.45 16 2 C -0.10 -2.06 3.16 -10.80 -0.03 -2.09 16 3 C -0.14 -2.78 9.09 71.98 0.65 -2.12 16 4 C 0.06 1.36 5.32 71.98 0.38 1.74 16 5 O -0.39 -11.54 9.83 -148.98 -1.46 -13.00 16 6 C 0.07 1.75 5.76 71.98 0.41 2.16 16 7 C 0.05 1.37 5.41 86.30 0.47 1.84 16 8 N -0.52 -20.53 5.34 -882.97 -4.72 -25.25 16 9 C 0.05 1.85 5.09 86.65 0.44 2.29 16 10 C -0.08 -4.16 5.75 31.80 0.18 -3.97 16 11 C 0.03 1.60 2.86 -10.66 -0.03 1.57 16 12 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 13 C -0.53 -30.27 8.38 25.60 0.21 -30.06 16 14 H 0.05 2.95 7.35 -2.91 -0.02 2.93 16 15 C 0.01 0.67 5.34 84.66 0.45 1.12 16 16 N -0.92 -54.79 12.63 21.45 0.27 -54.52 16 17 Si 0.95 45.06 29.54 68.60 2.03 47.09 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 21 C 0.06 2.42 6.34 86.44 0.55 2.97 16 22 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.04 1.05 7.82 -2.39 -0.02 1.03 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 1.26 6.52 -2.39 -0.02 1.24 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.06 1.57 7.81 -2.39 -0.02 1.55 16 34 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.07 2.76 7.56 -2.39 -0.02 2.75 16 36 H 0.04 1.56 8.01 -2.39 -0.02 1.54 16 37 H 0.04 2.09 8.12 -2.39 -0.02 2.07 16 38 H 0.03 1.77 7.86 -2.39 -0.02 1.75 16 39 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 40 H 0.04 1.41 7.57 -2.39 -0.02 1.39 16 41 H 0.06 2.70 7.40 -2.39 -0.02 2.68 16 Total: -1.00 -64.09 324.24 1.42 -62.67 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 0.95 Total: 9.01 kcal Atomic # 6 Polarization: -30.36 SS G_CDS: 4.35 Total: -26.01 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -4.45 Total: -79.77 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -1.46 Total: -13.00 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -64.09 1.42 -62.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397628039.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.067 kcal (2) G-P(sol) polarization free energy of solvation -64.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds