Wall clock time and date at job start Mon Mar 30 2020 05:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.45353 * 2 1 4 4 C 1.53036 * 109.45910 * 240.03043 * 2 1 3 5 5 C 1.53123 * 109.27788 * 180.80434 * 4 2 1 6 6 C 1.53123 * 109.16001 * 57.65365 * 5 4 2 7 7 H 1.08996 * 109.50416 * 182.40514 * 6 5 4 8 8 O 1.42901 * 109.50095 * 62.28801 * 6 5 4 9 9 C 1.53032 * 109.27911 * 302.34817 * 6 5 4 10 10 N 1.46842 * 109.46384 * 119.98030 * 2 1 3 11 11 C 1.46907 * 110.99676 * 305.85242 * 10 2 1 12 12 C 1.53003 * 109.46617 * 189.99879 * 11 10 2 13 13 C 1.53004 * 109.46727 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.47146 * 180.02562 * 13 12 11 15 15 C 1.50695 * 109.47204 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00027 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00235 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99973 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 120.00330 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46745 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.46997 * 119.99973 * 19 17 15 22 22 H 1.48500 * 109.46961 * 239.99813 * 19 17 15 23 23 H 1.08999 * 109.47615 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47040 * 299.96867 * 1 2 3 25 25 H 1.08999 * 109.47588 * 59.96625 * 1 2 3 26 26 H 1.09000 * 109.50632 * 300.74726 * 4 2 1 27 27 H 1.09006 * 109.50216 * 60.86520 * 4 2 1 28 28 H 1.09000 * 109.52561 * 177.56017 * 5 4 2 29 29 H 1.09007 * 109.52268 * 297.75177 * 5 4 2 30 30 H 0.96697 * 113.99866 * 60.19619 * 8 6 5 31 31 H 1.09003 * 109.46473 * 299.16126 * 9 6 5 32 32 H 1.08995 * 109.46713 * 179.19608 * 9 6 5 33 33 H 1.08995 * 109.47235 * 309.99915 * 11 10 2 34 34 H 1.08997 * 109.46937 * 70.00451 * 11 10 2 35 35 H 1.08995 * 109.47347 * 299.99967 * 12 11 10 36 36 H 1.08997 * 109.47000 * 60.00610 * 12 11 10 37 37 H 1.09004 * 109.47051 * 300.00286 * 13 12 11 38 38 H 1.09004 * 109.46662 * 59.99922 * 13 12 11 39 39 H 1.09004 * 109.47132 * 299.99934 * 14 13 12 40 40 H 1.08997 * 109.47258 * 59.99671 * 14 13 12 41 41 H 0.97003 * 120.00074 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7208 -1.2500 5 6 3.5709 -0.7360 -1.2357 6 6 4.0547 -1.4188 0.0466 7 1 5.1438 -1.3948 0.0830 8 8 3.6060 -2.7754 0.0631 9 6 3.4865 -0.6778 1.2590 10 7 2.0193 -0.6918 1.1992 11 6 1.4373 -0.1107 2.4165 12 6 2.1497 -0.6807 3.6447 13 6 1.5440 -0.0750 4.9124 14 6 2.2569 -0.6445 6.1406 15 6 1.6599 -0.0484 7.3893 16 1 0.8530 0.6656 7.3144 17 6 2.1437 -0.4145 8.6273 18 7 3.1258 -1.2843 8.7186 19 14 1.4041 0.3250 10.1752 20 1 0.3213 1.2707 9.8033 21 1 0.8461 -0.7585 11.0236 22 1 2.4576 1.0511 10.9290 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5134 0.8903 25 1 -0.3634 0.5143 -0.8896 26 1 1.6658 -1.7446 -1.2578 27 1 1.6893 -0.1980 -2.1400 28 1 3.9378 -1.2862 -2.1022 29 1 3.9456 0.2871 -1.2673 30 1 3.9287 -3.3055 -0.6784 31 1 3.8403 0.3531 1.2532 32 1 3.8174 -1.1700 2.1734 33 1 1.5587 0.9723 2.3960 34 1 0.3765 -0.3565 2.4652 35 1 2.0283 -1.7637 3.6651 36 1 3.2105 -0.4349 3.5960 37 1 1.6659 1.0080 4.8917 38 1 0.4831 -0.3204 4.9612 39 1 2.1354 -1.7275 6.1616 40 1 3.3176 -0.3988 6.0915 41 1 3.4665 -1.5416 9.5897 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399349790.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:07 Heat of formation + Delta-G solvation = -72.624574 kcal Electronic energy + Delta-G solvation = -17843.288341 eV Core-core repulsion = 15143.032277 eV Total energy + Delta-G solvation = -2700.256064 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -39.71145 -36.53864 -34.83171 -33.10118 -31.64625 -31.51796 -28.31604 -26.79436 -25.12066 -23.61116 -21.61706 -20.91301 -19.83120 -19.62139 -16.92080 -16.20296 -16.12752 -15.37092 -15.00076 -14.43236 -14.38264 -14.15966 -13.58469 -13.23204 -12.91549 -12.46189 -12.33388 -12.13023 -11.84908 -11.65345 -11.60740 -11.32482 -11.11729 -10.95890 -10.84830 -10.45636 -10.43524 -10.25101 -10.17636 -9.77710 -9.53757 -9.19666 -8.94579 -8.29246 -8.06908 -5.94071 -3.96078 3.34337 3.41478 3.45963 3.91888 4.25351 4.50840 4.61729 4.66256 4.83841 5.04095 5.20419 5.30576 5.38946 5.40828 5.41916 5.56841 5.59067 5.68801 5.70135 5.74258 5.83294 5.83858 5.98271 6.05877 6.14298 6.22357 6.29967 6.39579 6.57611 6.88458 7.02900 7.18289 7.26531 7.36780 7.70310 7.75819 7.92016 8.07500 8.50487 9.11730 9.67656 11.17343 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.041127 B = 0.004144 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.649251 B = 6754.540729 C = 7230.709019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.080 3.920 3 H 0.033 0.967 4 C -0.106 4.106 5 C -0.155 4.155 6 C 0.108 3.892 7 H 0.055 0.945 8 O -0.545 6.545 9 C 0.054 3.946 10 N -0.522 5.522 11 C 0.056 3.944 12 C -0.121 4.121 13 C -0.108 4.108 14 C 0.021 3.979 15 C -0.518 4.518 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.285 1.285 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.366 0.634 31 H 0.042 0.958 32 H 0.095 0.905 33 H 0.027 0.973 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.044 0.956 38 H 0.047 0.953 39 H 0.016 0.984 40 H 0.014 0.986 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.186 1.449 -21.803 21.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.028 4.028 3 H 0.051 0.949 4 C -0.144 4.144 5 C -0.193 4.193 6 C 0.049 3.951 7 H 0.073 0.927 8 O -0.348 6.348 9 C -0.073 4.073 10 N -0.247 5.247 11 C -0.071 4.071 12 C -0.158 4.158 13 C -0.147 4.147 14 C -0.016 4.016 15 C -0.557 4.557 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.211 1.211 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.212 0.788 31 H 0.060 0.940 32 H 0.113 0.887 33 H 0.045 0.955 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.034 0.966 40 H 0.032 0.968 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.168 1.090 -21.157 21.186 hybrid contribution 0.285 1.121 0.435 1.236 sum 0.117 2.212 -20.722 20.840 Atomic orbital electron populations 1.21880 0.94390 1.02654 1.01523 1.21620 0.95531 0.94839 0.90821 0.94862 1.21526 0.94567 1.01945 0.96324 1.22326 0.97363 1.01290 0.98305 1.21836 0.96103 0.82774 0.94409 0.92723 1.86714 1.76187 1.21047 1.50872 1.22219 0.88540 0.97877 0.98714 1.61943 1.06209 1.54824 1.01731 1.22271 0.99780 0.96028 0.89035 1.21822 0.99211 1.01199 0.93594 1.21597 0.99531 0.99002 0.94541 1.19094 0.95442 0.96253 0.90844 1.21332 1.18230 1.24868 0.91257 0.92736 1.25033 0.95133 0.95231 0.99145 1.69983 1.26630 1.32894 1.24072 0.86564 0.79117 0.79065 0.83423 1.19774 1.21019 1.21074 0.91668 0.92263 0.92648 0.90451 0.92087 0.91766 0.91569 0.78814 0.93975 0.88666 0.95462 0.90619 0.91492 0.92501 0.93769 0.93425 0.96573 0.96802 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.78 37.16 0.33 -1.26 16 2 C 0.08 0.94 2.40 -67.73 -0.16 0.78 16 3 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 4 C -0.11 -1.06 5.22 -26.65 -0.14 -1.19 16 5 C -0.15 -1.40 5.70 -26.60 -0.15 -1.55 16 6 C 0.11 1.18 3.81 -26.65 -0.10 1.08 16 7 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 8 O -0.54 -6.52 12.65 -35.23 -0.45 -6.97 16 9 C 0.05 0.73 4.54 -3.84 -0.02 0.71 16 10 N -0.52 -7.38 4.52 -226.69 -1.03 -8.40 16 11 C 0.06 0.86 4.36 -3.82 -0.02 0.84 16 12 C -0.12 -2.19 4.46 -26.73 -0.12 -2.31 16 13 C -0.11 -2.33 5.15 -26.73 -0.14 -2.47 16 14 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 15 C -0.52 -15.18 9.11 -34.45 -0.31 -15.49 16 16 H 0.05 1.55 7.74 -52.48 -0.41 1.15 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.66 13.29 55.43 0.74 -26.92 16 19 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.67 6.55 -51.93 -0.34 0.33 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.86 7.80 -51.93 -0.40 0.45 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.37 2.71 9.08 45.56 0.41 3.12 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.10 1.44 5.81 -51.93 -0.30 1.13 16 33 H 0.03 0.41 8.08 -51.93 -0.42 -0.01 16 34 H 0.08 1.15 6.84 -51.93 -0.36 0.80 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.06 1.02 6.21 -51.93 -0.32 0.70 16 37 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 317.56 15.07 4.79 4.79 Total: -1.00 -32.22 317.56 -8.81 -41.03 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -6.77 Total: -1.73 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -1.07 Total: -18.90 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: -0.29 Total: -35.32 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.45 Total: -6.97 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.22 -8.81 -41.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399349790.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.599 kcal (2) G-P(sol) polarization free energy of solvation -32.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds