Wall clock time and date at job start Mon Mar 30 2020 05:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.45525 * 2 1 4 4 C 1.53034 * 109.46185 * 119.97467 * 2 1 3 5 5 C 1.53122 * 109.27880 * 179.19354 * 4 2 1 6 6 C 1.53119 * 109.15633 * 302.34302 * 5 4 2 7 7 H 1.08992 * 109.50694 * 297.67027 * 6 5 4 8 8 O 1.42903 * 109.49592 * 177.59609 * 6 5 4 9 9 C 1.53030 * 109.31050 * 57.63865 * 6 5 4 10 10 N 1.46843 * 109.52208 * 300.87772 * 9 6 5 11 11 C 1.46908 * 110.99987 * 185.80297 * 10 9 6 12 12 C 1.53002 * 109.46794 * 45.74668 * 11 10 9 13 13 C 1.53000 * 109.47100 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.47100 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.46802 * 179.97438 * 14 13 12 16 16 H 1.07991 * 120.00351 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99243 * 179.97438 * 15 14 13 18 18 N 1.31506 * 120.00575 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99425 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47484 * 59.99747 * 19 17 15 21 21 H 1.48500 * 109.47444 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47048 * 300.00301 * 19 17 15 23 23 H 1.09002 * 109.46845 * 300.02951 * 1 2 3 24 24 H 1.08998 * 109.46959 * 60.02331 * 1 2 3 25 25 H 1.08997 * 109.47511 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.50590 * 59.24992 * 4 2 1 27 27 H 1.09004 * 109.53663 * 299.15100 * 4 2 1 28 28 H 1.08997 * 109.52208 * 182.44329 * 5 4 2 29 29 H 1.08997 * 109.57556 * 62.28171 * 5 4 2 30 30 H 0.96700 * 114.00311 * 60.08229 * 8 6 5 31 31 H 1.09001 * 109.46785 * 60.85476 * 9 6 5 32 32 H 1.09003 * 109.46566 * 180.81931 * 9 6 5 33 33 H 1.08993 * 109.47322 * 165.74084 * 11 10 9 34 34 H 1.09000 * 109.47010 * 285.75089 * 11 10 9 35 35 H 1.09004 * 109.47153 * 300.00388 * 12 11 10 36 36 H 1.08997 * 109.47412 * 60.00126 * 12 11 10 37 37 H 1.09000 * 109.46619 * 299.99952 * 13 12 11 38 38 H 1.09000 * 109.47188 * 60.00125 * 13 12 11 39 39 H 1.09004 * 109.47153 * 299.99983 * 14 13 12 40 40 H 1.09000 * 109.46998 * 60.00009 * 14 13 12 41 41 H 0.97008 * 120.00029 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 1.2499 5 6 3.5710 -0.7361 1.2355 6 6 4.0547 -1.4189 -0.0468 7 1 3.7130 -2.4538 -0.0592 8 8 5.4826 -1.3873 -0.0945 9 6 3.4864 -0.6786 -1.2596 10 7 2.0193 -0.6917 -1.1993 11 6 1.4372 -0.1105 -2.4165 12 6 2.1496 -0.6804 -3.6448 13 6 1.5438 -0.0747 -4.9125 14 6 2.2567 -0.6441 -6.1407 15 6 1.6595 -0.0479 -7.3894 16 1 0.8522 0.6654 -7.3145 17 6 2.1441 -0.4132 -8.6275 18 7 3.1269 -1.2822 -8.7188 19 14 1.4045 0.3263 -10.1752 20 1 1.5693 1.8019 -10.1464 21 1 2.0962 -0.2264 -11.3674 22 1 -0.0407 -0.0090 -10.2422 23 1 -0.3633 0.5143 0.8897 24 1 -0.3633 0.5135 -0.8902 25 1 -0.3634 -1.0276 0.0005 26 1 1.6658 -1.7447 1.2576 27 1 1.6895 -0.1987 2.1403 28 1 3.9379 -1.2864 2.1019 29 1 3.9467 0.2866 1.2677 30 1 5.9109 -1.8379 0.6462 31 1 3.8403 0.3523 -1.2545 32 1 3.8174 -1.1714 -2.1738 33 1 0.3765 -0.3564 -2.4652 34 1 1.5587 0.9725 -2.3960 35 1 3.2105 -0.4347 -3.5962 36 1 2.0282 -1.7634 -3.6654 37 1 0.4830 -0.3202 -4.9613 38 1 1.6657 1.0083 -4.8918 39 1 3.3175 -0.3983 -6.0917 40 1 2.1352 -1.7271 -6.1617 41 1 3.4681 -1.5389 -9.5898 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399349792.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:18 Heat of formation + Delta-G solvation = -97.859982 kcal Electronic energy + Delta-G solvation = -17712.118926 eV Core-core repulsion = 15010.768573 eV Total energy + Delta-G solvation = -2701.350353 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.68486 -37.79980 -36.52890 -34.88825 -33.21175 -32.52529 -30.01223 -27.71285 -26.53234 -25.03954 -22.93248 -22.23507 -21.46468 -20.70093 -18.45087 -18.24557 -17.09100 -16.53799 -16.38429 -16.09517 -15.57311 -15.31144 -14.77940 -14.46982 -14.26345 -14.04864 -13.72378 -13.48596 -13.35751 -12.98620 -12.83389 -12.70706 -12.44810 -12.30693 -12.29955 -12.07057 -11.82239 -11.64426 -11.37762 -11.30157 -11.22618 -10.99034 -10.72494 -10.55550 -9.32470 -8.19969 -6.32026 1.39181 1.42975 1.50962 2.40740 2.64023 3.12588 3.49532 3.73035 3.81698 3.92586 4.06926 4.11625 4.17052 4.34060 4.41210 4.46142 4.56260 4.59294 4.70304 4.78175 4.81668 4.87616 4.91094 4.92902 5.03168 5.07364 5.13935 5.19931 5.26698 5.28671 5.32761 5.44222 5.52817 5.75295 5.85271 6.04498 6.16965 6.25175 6.85129 6.89132 7.37378 8.91872 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.035839 B = 0.004163 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.084807 B = 6723.595912 C = 7378.524997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.071 3.929 3 H 0.033 0.967 4 C -0.104 4.104 5 C -0.146 4.146 6 C 0.109 3.891 7 H 0.065 0.935 8 O -0.587 6.587 9 C 0.054 3.946 10 N -0.534 5.534 11 C 0.068 3.932 12 C -0.112 4.112 13 C -0.095 4.095 14 C 0.023 3.977 15 C -0.546 4.546 16 H 0.061 0.939 17 C -0.002 4.002 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.266 1.266 21 H -0.282 1.282 22 H -0.265 1.265 23 H 0.078 0.922 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.060 0.940 30 H 0.397 0.603 31 H 0.024 0.976 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.032 0.968 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.048 0.952 39 H -0.014 1.014 40 H -0.010 1.010 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.430 1.317 23.157 23.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.036 4.036 3 H 0.051 0.949 4 C -0.142 4.142 5 C -0.184 4.184 6 C 0.050 3.950 7 H 0.083 0.917 8 O -0.396 6.396 9 C -0.074 4.074 10 N -0.260 5.260 11 C -0.059 4.059 12 C -0.149 4.149 13 C -0.134 4.134 14 C -0.014 4.014 15 C -0.584 4.584 16 H 0.079 0.921 17 C -0.200 4.200 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.191 1.191 21 H -0.208 1.208 22 H -0.190 1.190 23 H 0.097 0.903 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.078 0.922 30 H 0.248 0.752 31 H 0.043 0.957 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.004 0.996 40 H 0.008 0.992 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.586 1.075 22.546 22.719 hybrid contribution 0.478 0.690 -0.818 1.172 sum -2.108 1.764 21.727 21.901 Atomic orbital electron populations 1.21876 0.93007 1.02815 1.02469 1.21843 0.96561 0.95127 0.90112 0.94907 1.21574 0.94257 1.01803 0.96543 1.22277 0.96906 1.01455 0.97732 1.21699 0.80187 0.98812 0.94281 0.91725 1.86452 1.19110 1.81109 1.52887 1.21960 0.87981 0.98618 0.98843 1.61928 1.05734 1.55669 1.02675 1.22080 0.99716 0.96168 0.87934 1.21669 0.99131 1.00385 0.93759 1.21395 0.99331 0.99080 0.93554 1.19014 0.94425 0.94749 0.93200 1.21710 1.18766 1.25507 0.92453 0.92072 1.26036 0.95404 0.95488 1.03072 1.70105 1.27862 1.34134 1.25420 0.85469 0.78786 0.78868 0.77730 1.19135 1.20755 1.18979 0.90312 0.92941 0.91765 0.90697 0.89088 0.89176 0.92169 0.75243 0.95739 0.91205 0.89342 0.95008 0.93202 0.92416 0.92589 0.93294 0.99579 0.99206 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.78 71.98 0.63 -1.87 16 2 C 0.07 1.45 2.41 44.94 0.11 1.56 16 3 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 4 C -0.10 -1.62 5.37 30.65 0.16 -1.46 16 5 C -0.15 -2.37 5.63 30.67 0.17 -2.19 16 6 C 0.11 2.40 3.63 30.64 0.11 2.51 16 7 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 8 O -0.59 -13.15 13.32 -148.98 -1.98 -15.13 16 9 C 0.05 1.52 4.50 86.32 0.39 1.90 16 10 N -0.53 -13.92 4.64 -871.13 -4.04 -17.96 16 11 C 0.07 1.98 4.36 86.30 0.38 2.36 16 12 C -0.11 -4.06 4.46 30.59 0.14 -3.92 16 13 C -0.10 -4.10 5.15 30.59 0.16 -3.94 16 14 C 0.02 1.29 4.97 29.85 0.15 1.44 16 15 C -0.55 -32.31 9.11 25.60 0.23 -32.08 16 16 H 0.06 3.44 7.74 -2.92 -0.02 3.41 16 17 C 0.00 -0.15 5.46 84.66 0.46 0.32 16 18 N -0.94 -58.83 13.29 21.45 0.28 -58.55 16 19 Si 0.97 45.28 29.54 68.60 2.03 47.31 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.05 0.99 6.55 -2.39 -0.02 0.98 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.40 4.77 9.08 -74.06 -0.67 4.10 16 31 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 2.27 5.82 -2.39 -0.01 2.26 16 33 H 0.09 2.41 6.84 -2.39 -0.02 2.39 16 34 H 0.03 0.92 8.08 -2.39 -0.02 0.90 16 35 H 0.05 1.90 6.21 -2.38 -0.01 1.88 16 36 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 39 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 40 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 41 H 0.26 15.55 8.31 -92.70 -0.77 14.78 16 Total: -1.00 -69.11 318.56 -0.32 -69.43 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.30 Total: 10.28 kcal Atomic # 6 Polarization: -38.46 SS G_CDS: 3.09 Total: -35.37 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -3.76 Total: -76.51 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -1.98 Total: -15.13 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -69.11 -0.32 -69.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399349792.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.433 kcal (2) G-P(sol) polarization free energy of solvation -69.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds