Wall clock time and date at job start Mon Mar 30 2020 04:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47252 * 2 1 4 4 H 1.08998 * 109.47523 * 303.17813 * 3 2 1 5 5 C 1.50703 * 109.47295 * 183.17516 * 3 2 1 6 6 H 1.07998 * 120.00100 * 240.00723 * 5 3 2 7 7 C 1.37877 * 119.99516 * 60.00122 * 5 3 2 8 8 N 1.31516 * 120.00430 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99905 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47058 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47266 * 119.99635 * 9 7 5 12 12 H 1.48494 * 109.46986 * 240.00185 * 9 7 5 13 13 N 1.46907 * 109.47069 * 63.17770 * 3 2 1 14 14 C 1.46845 * 111.00031 * 65.45627 * 13 3 2 15 15 C 1.53038 * 109.52704 * 185.83756 * 14 13 3 16 16 C 1.53121 * 109.27777 * 300.82319 * 15 14 13 17 17 C 1.53001 * 109.52215 * 297.74800 * 16 15 14 18 18 C 1.52998 * 109.57577 * 177.58667 * 16 15 14 19 19 O 1.42898 * 109.46923 * 60.28363 * 18 16 15 20 20 C 1.53124 * 109.16193 * 57.64971 * 16 15 14 21 21 C 1.46849 * 110.99884 * 189.66392 * 13 3 2 22 22 H 1.09004 * 109.46857 * 59.99763 * 1 2 3 23 23 H 1.08998 * 109.47422 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46828 * 300.00321 * 1 2 3 25 25 H 1.09000 * 109.46828 * 239.99679 * 2 1 3 26 26 H 1.09005 * 109.46418 * 119.99933 * 2 1 3 27 27 H 0.96991 * 120.00347 * 179.97438 * 8 7 5 28 28 H 1.09003 * 109.46646 * 305.85760 * 14 13 3 29 29 H 1.09012 * 109.46180 * 65.82283 * 14 13 3 30 30 H 1.08995 * 109.50435 * 180.87869 * 15 14 13 31 31 H 1.09000 * 109.53303 * 60.78006 * 15 14 13 32 32 H 1.08997 * 109.46700 * 179.68398 * 17 16 15 33 33 H 1.09003 * 109.46970 * 299.68186 * 17 16 15 34 34 H 1.08992 * 109.47295 * 59.68078 * 17 16 15 35 35 H 1.08996 * 109.47029 * 180.28685 * 18 16 15 36 36 H 1.09006 * 109.47129 * 300.28424 * 18 16 15 37 37 H 0.96699 * 113.99826 * 180.02562 * 19 18 16 38 38 H 1.08990 * 109.50293 * 182.40353 * 20 16 15 39 39 H 1.09002 * 109.53161 * 62.30599 * 20 16 15 40 40 H 1.08997 * 109.46514 * 294.17902 * 21 13 3 41 41 H 1.08996 * 109.46052 * 54.15938 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6310 1.9725 -0.8601 5 6 3.5450 1.4432 -0.0787 6 1 4.1268 1.8959 0.7105 7 6 4.1791 0.8657 -1.1583 8 7 3.4706 0.3137 -2.1191 9 14 6.0446 0.8659 -1.2556 10 1 6.6027 1.5426 -0.0573 11 1 6.5378 -0.5339 -1.3074 12 1 6.4763 1.5886 -2.4789 13 7 1.6141 2.1124 1.2360 14 6 2.2510 1.5038 2.4109 15 6 1.6761 2.1273 3.6848 16 6 1.9304 3.6371 3.6679 17 6 3.4373 3.9018 3.6598 18 6 1.3056 4.2761 4.9098 19 8 1.8962 3.7135 6.0831 20 6 1.2984 4.2392 2.4099 21 6 1.8843 3.5545 1.1729 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8901 27 1 3.9167 -0.0922 -2.8787 28 1 2.0591 0.4308 2.4131 29 1 3.3261 1.6802 2.3734 30 1 2.1602 1.6864 4.5562 31 1 0.6034 1.9394 3.7306 32 1 3.6172 4.9767 3.6422 33 1 3.8863 3.4729 4.5557 34 1 3.8818 3.4444 2.7760 35 1 1.4832 5.3514 4.8935 36 1 0.2325 4.0851 4.9159 37 1 1.5468 4.0726 6.9102 38 1 1.5126 5.3071 2.3704 39 1 0.2196 4.0851 2.4345 40 1 2.9609 3.7212 1.1412 41 1 1.4257 3.9709 0.2761 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401768921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:27 Heat of formation + Delta-G solvation = -64.685101 kcal Electronic energy + Delta-G solvation = -19041.263798 eV Core-core repulsion = 16341.352016 eV Total energy + Delta-G solvation = -2699.911782 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.33271 -36.78762 -34.83650 -32.20513 -31.01850 -30.11686 -27.59319 -26.52586 -25.40090 -22.91815 -22.54815 -21.10023 -19.10666 -17.89379 -17.22274 -16.15541 -15.37603 -14.87301 -14.49780 -14.25433 -13.81925 -13.51684 -13.09314 -12.92147 -12.76349 -12.25379 -11.83685 -11.58120 -11.46488 -11.30984 -11.06475 -10.91528 -10.84341 -10.61668 -10.49752 -10.32201 -9.98045 -9.94070 -9.77667 -9.62944 -9.54394 -9.16439 -8.97494 -8.32699 -6.99106 -5.94910 -4.08278 3.27193 3.35971 3.39429 4.34087 4.42193 4.99274 5.11230 5.21198 5.27554 5.33005 5.58591 5.69945 5.80289 5.94250 6.03347 6.09856 6.19277 6.28290 6.39604 6.43495 6.52166 6.52787 6.58611 6.59101 6.67747 6.72599 6.86835 6.88420 7.07890 7.18157 7.24694 7.43566 7.67025 7.68557 7.81747 8.05959 8.22545 8.40772 8.55623 9.03087 9.59226 11.03784 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025665 B = 0.007845 C = 0.006711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.717544 B = 3568.235499 C = 4171.025007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 C 0.213 3.787 4 H 0.036 0.964 5 C -0.540 4.540 6 H 0.057 0.943 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.884 3.116 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.533 5.533 14 C 0.060 3.940 15 C -0.099 4.099 16 C -0.057 4.057 17 C -0.140 4.140 18 C 0.087 3.913 19 O -0.568 6.568 20 C -0.104 4.104 21 C 0.064 3.936 22 H 0.037 0.963 23 H 0.023 0.977 24 H 0.048 0.952 25 H 0.091 0.909 26 H 0.032 0.968 27 H 0.260 0.740 28 H 0.067 0.933 29 H 0.040 0.960 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.039 0.961 36 H 0.042 0.958 37 H 0.371 0.629 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.038 0.962 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.524 6.388 10.945 13.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C 0.107 3.893 4 H 0.054 0.946 5 C -0.579 4.579 6 H 0.075 0.925 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.713 3.287 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.257 5.257 14 C -0.068 4.068 15 C -0.137 4.137 16 C -0.058 4.058 17 C -0.197 4.197 18 C 0.010 3.990 19 O -0.373 6.373 20 C -0.142 4.142 21 C -0.064 4.064 22 H 0.056 0.944 23 H 0.043 0.957 24 H 0.067 0.933 25 H 0.109 0.891 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.216 0.784 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.056 0.944 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.676 5.889 10.350 12.793 hybrid contribution 1.625 0.440 0.138 1.689 sum -3.051 6.329 10.488 12.624 Atomic orbital electron populations 1.21703 0.98922 0.98284 1.00569 1.21590 0.92167 0.99245 1.01865 1.19262 0.92699 0.91065 0.86291 0.94581 1.21801 0.92855 1.37262 1.05961 0.92512 1.24908 0.97771 0.95137 0.95636 1.69884 1.34758 1.38064 1.09782 0.86661 0.86472 0.77717 0.77895 1.19952 1.21026 1.21081 1.62390 1.57656 1.01477 1.04205 1.21943 0.96987 0.98507 0.89352 1.21589 1.00773 0.93365 0.97983 1.20586 0.95947 0.96699 0.92526 1.21877 0.94984 1.00431 1.02437 1.22285 0.95692 0.95619 0.85452 1.86526 1.67011 1.67926 1.15804 1.21626 1.00217 0.98152 0.94205 1.21818 0.98716 0.90136 0.95753 0.94357 0.95738 0.93286 0.89125 0.94896 0.93023 0.91494 0.94199 0.92088 0.92395 0.93747 0.92518 0.91566 0.94314 0.93991 0.78363 0.92688 0.91797 0.94371 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.79 37.16 0.36 -2.47 16 2 C -0.11 -2.63 5.11 -26.73 -0.14 -2.77 16 3 C 0.21 5.24 1.73 -68.86 -0.12 5.12 16 4 H 0.04 0.99 7.99 -51.93 -0.42 0.57 16 5 C -0.54 -14.39 7.23 -34.44 -0.25 -14.64 16 6 H 0.06 1.53 5.84 -52.49 -0.31 1.23 16 7 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 8 N -0.89 -25.00 11.30 55.43 0.63 -24.37 16 9 Si 0.88 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 N -0.53 -11.18 3.98 -228.07 -0.91 -12.09 16 14 C 0.06 1.21 4.54 -3.83 -0.02 1.19 16 15 C -0.10 -1.66 4.71 -26.65 -0.13 -1.79 16 16 C -0.06 -0.87 0.60 -154.38 -0.09 -0.96 16 17 C -0.14 -2.22 7.75 37.16 0.29 -1.93 16 18 C 0.09 1.08 5.92 37.16 0.22 1.30 16 19 O -0.57 -6.98 12.38 -35.23 -0.44 -7.41 16 20 C -0.10 -1.60 4.88 -26.65 -0.13 -1.73 16 21 C 0.06 1.24 4.94 -3.83 -0.02 1.22 16 22 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 25 H 0.09 2.42 5.99 -51.93 -0.31 2.11 16 26 H 0.03 0.78 6.28 -51.93 -0.33 0.45 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.07 1.40 6.14 -51.93 -0.32 1.08 16 29 H 0.04 0.87 4.75 -51.92 -0.25 0.63 16 30 H 0.06 1.02 7.77 -51.93 -0.40 0.62 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.90 7.68 -51.93 -0.40 0.50 16 34 H 0.07 1.20 4.92 -51.93 -0.26 0.94 16 35 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.37 2.72 9.12 45.56 0.42 3.13 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.04 0.80 5.64 -51.93 -0.29 0.50 16 41 H 0.06 1.20 8.02 -51.93 -0.42 0.78 16 LS Contribution 302.29 15.07 4.56 4.56 Total: -1.00 -28.47 302.29 -7.49 -35.96 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.19 Total: 2.83 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -0.11 Total: -15.72 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: -0.28 Total: -36.46 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.44 Total: -7.41 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.47 -7.49 -35.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401768921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.728 kcal (2) G-P(sol) polarization free energy of solvation -28.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds