Wall clock time and date at job start Mon Mar 30 2020 04:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47252 * 2 1 4 4 H 1.08998 * 109.47523 * 303.17813 * 3 2 1 5 5 C 1.50703 * 109.47295 * 183.17516 * 3 2 1 6 6 H 1.07998 * 120.00100 * 240.00723 * 5 3 2 7 7 C 1.37877 * 119.99516 * 60.00122 * 5 3 2 8 8 N 1.31516 * 120.00430 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99905 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47058 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.47266 * 119.99635 * 9 7 5 12 12 H 1.48494 * 109.46986 * 240.00185 * 9 7 5 13 13 N 1.46907 * 109.47069 * 63.17770 * 3 2 1 14 14 C 1.46845 * 111.00031 * 65.45627 * 13 3 2 15 15 C 1.53038 * 109.52704 * 185.83756 * 14 13 3 16 16 C 1.53121 * 109.27777 * 300.82319 * 15 14 13 17 17 C 1.53001 * 109.52215 * 297.74800 * 16 15 14 18 18 C 1.52998 * 109.57577 * 177.58667 * 16 15 14 19 19 O 1.42898 * 109.46923 * 60.28363 * 18 16 15 20 20 C 1.53124 * 109.16193 * 57.64971 * 16 15 14 21 21 C 1.46849 * 110.99884 * 189.66392 * 13 3 2 22 22 H 1.09004 * 109.46857 * 59.99763 * 1 2 3 23 23 H 1.08998 * 109.47422 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46828 * 300.00321 * 1 2 3 25 25 H 1.09000 * 109.46828 * 239.99679 * 2 1 3 26 26 H 1.09005 * 109.46418 * 119.99933 * 2 1 3 27 27 H 0.96991 * 120.00347 * 179.97438 * 8 7 5 28 28 H 1.09003 * 109.46646 * 305.85760 * 14 13 3 29 29 H 1.09012 * 109.46180 * 65.82283 * 14 13 3 30 30 H 1.08995 * 109.50435 * 180.87869 * 15 14 13 31 31 H 1.09000 * 109.53303 * 60.78006 * 15 14 13 32 32 H 1.08997 * 109.46700 * 179.68398 * 17 16 15 33 33 H 1.09003 * 109.46970 * 299.68186 * 17 16 15 34 34 H 1.08992 * 109.47295 * 59.68078 * 17 16 15 35 35 H 1.08996 * 109.47029 * 180.28685 * 18 16 15 36 36 H 1.09006 * 109.47129 * 300.28424 * 18 16 15 37 37 H 0.96699 * 113.99826 * 180.02562 * 19 18 16 38 38 H 1.08990 * 109.50293 * 182.40353 * 20 16 15 39 39 H 1.09002 * 109.53161 * 62.30599 * 20 16 15 40 40 H 1.08997 * 109.46514 * 294.17902 * 21 13 3 41 41 H 1.08996 * 109.46052 * 54.15938 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6310 1.9725 -0.8601 5 6 3.5450 1.4432 -0.0787 6 1 4.1268 1.8959 0.7105 7 6 4.1791 0.8657 -1.1583 8 7 3.4706 0.3137 -2.1191 9 14 6.0446 0.8659 -1.2556 10 1 6.6027 1.5426 -0.0573 11 1 6.5378 -0.5339 -1.3074 12 1 6.4763 1.5886 -2.4789 13 7 1.6141 2.1124 1.2360 14 6 2.2510 1.5038 2.4109 15 6 1.6761 2.1273 3.6848 16 6 1.9304 3.6371 3.6679 17 6 3.4373 3.9018 3.6598 18 6 1.3056 4.2761 4.9098 19 8 1.8962 3.7135 6.0831 20 6 1.2984 4.2392 2.4099 21 6 1.8843 3.5545 1.1729 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8901 27 1 3.9167 -0.0922 -2.8787 28 1 2.0591 0.4308 2.4131 29 1 3.3261 1.6802 2.3734 30 1 2.1602 1.6864 4.5562 31 1 0.6034 1.9394 3.7306 32 1 3.6172 4.9767 3.6422 33 1 3.8863 3.4729 4.5557 34 1 3.8818 3.4444 2.7760 35 1 1.4832 5.3514 4.8935 36 1 0.2325 4.0851 4.9159 37 1 1.5468 4.0726 6.9102 38 1 1.5126 5.3071 2.3704 39 1 0.2196 4.0851 2.4345 40 1 2.9609 3.7212 1.1412 41 1 1.4257 3.9709 0.2761 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401768921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:26 Heat of formation + Delta-G solvation = -84.033053 kcal Electronic energy + Delta-G solvation = -19042.102788 eV Core-core repulsion = 16341.352016 eV Total energy + Delta-G solvation = -2700.750772 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.74948 -38.09728 -36.26360 -34.10230 -32.74821 -31.60069 -29.24911 -27.81105 -27.02363 -24.71317 -24.05010 -22.60022 -20.95687 -19.37810 -18.17722 -18.00052 -17.13554 -16.34192 -15.92491 -15.73643 -15.29564 -15.07477 -14.75827 -14.51577 -14.13119 -13.71150 -13.38794 -13.25239 -13.11370 -12.89242 -12.72882 -12.58085 -12.55421 -12.30753 -12.02433 -11.89901 -11.57845 -11.52330 -11.37827 -11.12319 -10.95779 -10.78803 -10.65804 -10.41555 -8.82655 -8.01810 -6.24951 1.33165 1.36456 1.45842 2.38816 3.14854 3.41093 3.49504 3.88625 3.93449 4.18929 4.44553 4.49490 4.54807 4.60250 4.66289 4.73638 4.75859 4.81680 4.82452 4.91040 4.93162 5.03614 5.12013 5.15894 5.23096 5.28901 5.30561 5.39253 5.44267 5.44717 5.55304 5.62424 5.67528 5.81813 6.09891 6.23944 6.43523 6.75959 6.98195 7.05126 7.45785 8.92040 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025665 B = 0.007845 C = 0.006711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.717544 B = 3568.235499 C = 4171.025007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.105 4.105 3 C 0.219 3.781 4 H 0.003 0.997 5 C -0.547 4.547 6 H 0.047 0.953 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.942 3.058 10 H -0.275 1.275 11 H -0.280 1.280 12 H -0.280 1.280 13 N -0.526 5.526 14 C 0.066 3.934 15 C -0.089 4.089 16 C -0.059 4.059 17 C -0.134 4.134 18 C 0.095 3.905 19 O -0.587 6.587 20 C -0.093 4.093 21 C 0.062 3.938 22 H 0.033 0.967 23 H 0.044 0.956 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.028 0.972 27 H 0.261 0.739 28 H 0.052 0.948 29 H 0.015 0.985 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.033 0.967 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.394 0.606 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.016 0.984 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.242 7.509 12.754 15.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.144 4.144 3 C 0.111 3.889 4 H 0.021 0.979 5 C -0.586 4.586 6 H 0.065 0.935 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.769 3.231 10 H -0.199 1.199 11 H -0.206 1.206 12 H -0.206 1.206 13 N -0.250 5.250 14 C -0.063 4.063 15 C -0.127 4.127 16 C -0.060 4.060 17 C -0.191 4.191 18 C 0.017 3.983 19 O -0.395 6.395 20 C -0.131 4.131 21 C -0.066 4.066 22 H 0.052 0.948 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.033 0.967 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.243 0.757 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.034 0.966 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.403 7.023 12.187 15.068 hybrid contribution 1.865 0.095 -0.410 1.912 sum -3.537 7.118 11.777 14.209 Atomic orbital electron populations 1.21555 0.96155 0.99710 1.00751 1.21432 0.94599 0.98262 1.00095 1.19044 0.91458 0.91478 0.86902 0.97911 1.22013 0.94163 1.36817 1.05621 0.93469 1.25586 1.01671 0.95069 0.95506 1.70002 1.36179 1.38698 1.10194 0.85750 0.81832 0.77736 0.77781 1.19940 1.20589 1.20575 1.62367 1.57176 1.02436 1.03057 1.21895 0.95726 0.98020 0.90614 1.21483 1.00827 0.94667 0.95693 1.20597 0.95561 0.95528 0.94270 1.21797 0.95529 1.01158 1.00651 1.22127 0.95927 0.96186 0.84053 1.86463 1.67589 1.68558 1.16928 1.21542 1.00462 0.99031 0.92079 1.21888 0.97679 0.89214 0.97865 0.94796 0.93695 0.92331 0.92113 0.95306 0.92972 0.92906 0.96658 0.91905 0.91589 0.92076 0.92797 0.94794 0.92344 0.92571 0.75716 0.90199 0.90662 0.96567 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.06 9.79 71.98 0.70 -4.35 16 2 C -0.11 -5.14 5.11 30.59 0.16 -4.99 16 3 C 0.22 11.09 1.73 44.17 0.08 11.17 16 4 H 0.00 0.17 7.99 -2.39 -0.02 0.15 16 5 C -0.55 -30.15 7.23 25.60 0.18 -29.97 16 6 H 0.05 2.65 5.84 -2.91 -0.02 2.63 16 7 C 0.02 1.19 5.30 84.65 0.45 1.64 16 8 N -0.91 -52.74 11.30 21.45 0.24 -52.50 16 9 Si 0.94 44.51 29.54 68.60 2.03 46.53 16 10 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 13 N -0.53 -22.31 3.98 -875.49 -3.48 -25.79 16 14 C 0.07 2.65 4.54 86.33 0.39 3.04 16 15 C -0.09 -2.84 4.71 30.65 0.14 -2.70 16 16 C -0.06 -1.65 0.60 -52.10 -0.03 -1.68 16 17 C -0.13 -4.07 7.75 71.98 0.56 -3.51 16 18 C 0.09 1.96 5.92 71.98 0.43 2.39 16 19 O -0.59 -12.31 12.38 -148.98 -1.84 -14.16 16 20 C -0.09 -2.65 4.88 30.65 0.15 -2.50 16 21 C 0.06 2.38 4.94 86.33 0.43 2.81 16 22 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 23 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.06 2.25 7.70 -2.39 -0.02 2.23 16 25 H 0.06 3.34 5.99 -2.39 -0.01 3.33 16 26 H 0.03 1.39 6.28 -2.38 -0.01 1.37 16 27 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 28 H 0.05 2.24 6.14 -2.39 -0.01 2.22 16 29 H 0.02 0.69 4.75 -2.38 -0.01 0.68 16 30 H 0.06 2.00 7.77 -2.39 -0.02 1.98 16 31 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.05 1.64 7.68 -2.39 -0.02 1.62 16 34 H 0.03 1.23 4.92 -2.39 -0.01 1.22 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 37 H 0.39 4.24 9.12 -74.06 -0.68 3.56 16 38 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.02 0.69 5.64 -2.39 -0.01 0.68 16 41 H 0.05 2.11 8.02 -2.39 -0.02 2.09 16 Total: -1.00 -62.32 302.29 0.90 -61.41 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.33 Total: 13.17 kcal Atomic # 6 Polarization: -32.30 SS G_CDS: 3.64 Total: -28.66 kcal Atomic # 7 Polarization: -75.05 SS G_CDS: -3.24 Total: -78.29 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -1.84 Total: -14.16 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -62.32 0.90 -61.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401768921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.619 kcal (2) G-P(sol) polarization free energy of solvation -62.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds