Wall clock time and date at job start Mon Mar 30 2020 03:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52989 * 109.47393 * 2 1 4 4 C 1.52996 * 109.46922 * 239.99790 * 2 1 3 5 5 O 1.42898 * 109.47430 * 60.00238 * 4 2 1 6 6 C 1.52999 * 109.46620 * 120.00171 * 2 1 3 7 7 N 1.46503 * 109.47260 * 299.99537 * 6 2 1 8 8 C 1.36944 * 119.99817 * 270.28296 * 7 6 2 9 9 H 1.07997 * 119.99698 * 144.77268 * 8 7 6 10 10 C 1.38813 * 119.99610 * 324.76566 * 8 7 6 11 11 N 1.31620 * 120.00405 * 338.15417 * 10 8 7 12 12 Si 1.86801 * 119.99448 * 158.15922 * 10 8 7 13 13 H 1.48503 * 109.47391 * 59.99724 * 12 10 8 14 14 H 1.48499 * 109.46839 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47097 * 299.99402 * 12 10 8 16 16 C 1.46496 * 120.00149 * 89.99836 * 7 6 2 17 17 C 1.54262 * 110.03694 * 231.81442 * 16 7 6 18 18 C 1.54963 * 104.16030 * 217.13545 * 17 16 7 19 19 C 1.54890 * 102.77626 * 37.88976 * 18 17 16 20 20 C 1.53878 * 110.02976 * 114.59668 * 16 7 6 21 21 H 1.09003 * 109.46999 * 300.00836 * 1 2 3 22 22 H 1.09001 * 109.46609 * 59.99664 * 1 2 3 23 23 H 1.08992 * 109.47627 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47395 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47517 * 299.99779 * 3 2 1 26 26 H 1.09003 * 109.47730 * 59.99612 * 3 2 1 27 27 H 1.09000 * 109.47149 * 180.02562 * 4 2 1 28 28 H 1.09003 * 109.47249 * 299.99973 * 4 2 1 29 29 H 0.96702 * 113.99997 * 179.97438 * 5 4 2 30 30 H 1.09002 * 109.46827 * 180.02562 * 6 2 1 31 31 H 1.08994 * 109.47824 * 59.99794 * 6 2 1 32 32 H 0.96998 * 120.00076 * 175.67676 * 11 10 8 33 33 H 1.09006 * 110.01272 * 353.21409 * 16 7 6 34 34 H 1.08998 * 110.48527 * 335.78642 * 17 16 7 35 35 H 1.09001 * 110.48363 * 98.42579 * 17 16 7 36 36 H 1.08994 * 110.72540 * 279.57387 * 18 17 16 37 37 H 1.09006 * 110.91921 * 156.29717 * 18 17 16 38 38 H 1.08998 * 110.48689 * 203.40122 * 19 18 17 39 39 H 1.09007 * 110.59760 * 80.81408 * 19 18 17 40 40 H 1.09002 * 110.03398 * 238.57527 * 20 16 7 41 41 H 1.08999 * 110.03377 * 0.02562 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.5637 -0.0477 -2.4160 6 6 2.0399 -0.7213 1.2493 7 7 1.5516 -0.0307 2.4455 8 6 2.2890 0.9806 3.0012 9 1 1.7918 1.8277 3.4501 10 6 3.6756 0.9168 2.9874 11 7 4.2797 -0.2448 2.8526 12 14 4.6842 2.4796 3.1605 13 1 4.3678 3.1320 4.4565 14 1 6.1299 2.1431 3.1162 15 1 4.3567 3.4059 2.0471 16 6 0.2715 -0.4177 3.0435 17 6 -0.6200 0.8266 3.2351 18 6 -1.3512 0.5662 4.5764 19 6 -0.2563 -0.1111 5.4375 20 6 0.5025 -1.0140 4.4431 21 1 -0.3633 0.5140 0.8899 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 3.1301 1.4424 0.0005 25 1 1.6768 1.9563 -0.8900 26 1 1.6767 1.9564 0.8899 27 1 3.1299 -0.7217 -1.2490 28 1 1.6766 -1.7490 -1.2492 29 1 1.8493 -0.4511 -3.2472 30 1 3.1299 -0.7209 1.2495 31 1 1.6766 -1.7489 1.2493 32 1 5.2462 -0.2833 2.7800 33 1 -0.2332 -1.1443 2.4067 34 1 -0.0092 1.7268 3.3023 35 1 -1.3374 0.9112 2.4188 36 1 -2.1977 -0.1047 4.4303 37 1 -1.6760 1.5022 5.0307 38 1 -0.7087 -0.7100 6.2279 39 1 0.4142 0.6360 5.8625 40 1 0.1091 -2.0296 4.4858 41 1 1.5670 -1.0150 4.6775 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686005787.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:23 Heat of formation + Delta-G solvation = -64.359597 kcal Electronic energy + Delta-G solvation = -19339.128978 eV Core-core repulsion = 16639.231311 eV Total energy + Delta-G solvation = -2699.897667 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.98607 -38.42218 -36.43134 -34.50053 -32.45200 -29.40890 -28.62069 -27.99308 -27.28962 -26.62156 -23.83796 -21.38596 -20.62963 -19.73940 -18.39044 -17.66699 -17.00561 -16.60013 -15.93844 -15.80344 -15.50085 -14.75384 -14.61882 -14.34849 -14.03196 -13.79919 -13.45244 -13.04160 -12.80943 -12.64565 -12.56473 -12.41710 -12.19871 -11.95585 -11.79723 -11.72608 -11.70447 -11.40199 -11.32047 -11.16899 -11.10500 -10.93483 -10.75320 -10.33619 -8.43786 -7.65764 -5.26164 1.45224 1.49340 1.53218 2.57682 3.28980 3.49191 3.87638 4.04342 4.08420 4.13863 4.24486 4.39239 4.42324 4.68629 4.73840 4.75732 4.81341 4.88511 4.97257 4.98858 5.01863 5.09241 5.11518 5.22335 5.25630 5.27503 5.37085 5.41966 5.54823 5.62592 5.64127 5.67124 5.71869 5.80629 5.85846 5.98498 6.59263 7.00911 7.31614 8.03762 8.53368 9.25512 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.015796 B = 0.012474 C = 0.008203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.224255 B = 2244.131666 C = 3412.532753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.079 4.079 3 C -0.102 4.102 4 C 0.094 3.906 5 O -0.581 6.581 6 C 0.157 3.843 7 N -0.580 5.580 8 C -0.220 4.220 9 H 0.055 0.945 10 C -0.032 4.032 11 N -0.915 5.915 12 Si 0.925 3.075 13 H -0.281 1.281 14 H -0.300 1.300 15 H -0.282 1.282 16 C 0.166 3.834 17 C -0.131 4.131 18 C -0.112 4.112 19 C -0.113 4.113 20 C -0.134 4.134 21 H 0.060 0.940 22 H 0.045 0.955 23 H 0.045 0.955 24 H 0.017 0.983 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.032 0.968 28 H 0.051 0.949 29 H 0.389 0.611 30 H 0.068 0.932 31 H 0.021 0.979 32 H 0.244 0.756 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.043 0.957 40 H 0.053 0.947 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.716 -1.498 -4.035 9.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.081 4.081 3 C -0.159 4.159 4 C 0.015 3.985 5 O -0.388 6.388 6 C 0.030 3.970 7 N -0.299 5.299 8 C -0.350 4.350 9 H 0.072 0.928 10 C -0.228 4.228 11 N -0.561 5.561 12 Si 0.755 3.245 13 H -0.207 1.207 14 H -0.226 1.226 15 H -0.209 1.209 16 C 0.059 3.941 17 C -0.170 4.170 18 C -0.150 4.150 19 C -0.151 4.151 20 C -0.173 4.173 21 H 0.079 0.921 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.036 0.964 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.238 0.762 30 H 0.086 0.914 31 H 0.039 0.961 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.811 -1.172 -3.517 9.559 hybrid contribution 1.562 0.341 -0.281 1.623 sum -7.249 -0.831 -3.798 8.226 Atomic orbital electron populations 1.21734 0.94375 1.00595 1.01258 1.21144 0.96549 0.96267 0.94189 1.21421 0.98185 0.96403 0.99937 1.22072 0.96450 0.94684 0.85246 1.86450 1.77594 1.58123 1.16657 1.20815 1.00673 0.91342 0.84152 1.43926 1.19632 1.39823 1.26488 1.18884 0.87518 0.96987 1.31636 0.92769 1.25388 0.98191 0.97059 1.02159 1.70136 1.07929 1.23579 1.54452 0.85994 0.78041 0.82387 0.78085 1.20725 1.22618 1.20895 1.21256 0.86476 0.94191 0.92150 1.22755 0.97756 0.99250 0.97191 1.22408 0.97211 1.00342 0.95014 1.22206 0.97126 0.98295 0.97477 1.22592 0.99333 0.98100 0.97298 0.92081 0.93555 0.93551 0.96356 0.94186 0.92841 0.94953 0.93080 0.76186 0.91415 0.96086 0.94624 0.92407 0.92890 0.91748 0.90387 0.91380 0.91104 0.93834 0.92790 0.94506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.26 7.33 71.98 0.53 -3.73 16 2 C -0.08 -3.06 0.68 -52.19 -0.04 -3.09 16 3 C -0.10 -4.33 7.72 71.98 0.56 -3.77 16 4 C 0.09 3.10 5.91 71.98 0.43 3.52 16 5 O -0.58 -17.18 12.31 -148.98 -1.83 -19.01 16 6 C 0.16 7.04 4.35 86.38 0.38 7.42 16 7 N -0.58 -26.65 1.87 -674.01 -1.26 -27.91 16 8 C -0.22 -11.24 6.10 84.03 0.51 -10.73 16 9 H 0.05 2.84 6.30 -2.91 -0.02 2.82 16 10 C -0.03 -1.71 4.97 84.86 0.42 -1.28 16 11 N -0.92 -52.07 11.32 21.65 0.25 -51.83 16 12 Si 0.92 44.49 29.61 68.60 2.03 46.53 16 13 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 14 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 15 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 16 C 0.17 6.50 2.23 45.72 0.10 6.60 16 17 C -0.13 -4.53 5.56 31.69 0.18 -4.35 16 18 C -0.11 -3.22 6.91 31.91 0.22 -3.00 16 19 C -0.11 -3.70 6.83 31.67 0.22 -3.48 16 20 C -0.13 -5.19 6.33 31.32 0.20 -4.99 16 21 H 0.06 2.19 4.24 -2.39 -0.01 2.18 16 22 H 0.05 1.56 7.68 -2.39 -0.02 1.54 16 23 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.04 1.58 7.68 -2.39 -0.02 1.56 16 26 H 0.05 2.45 6.27 -2.39 -0.01 2.43 16 27 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.39 7.34 9.12 -74.06 -0.68 6.66 16 30 H 0.07 3.55 5.35 -2.39 -0.01 3.54 16 31 H 0.02 0.91 7.99 -2.39 -0.02 0.89 16 32 H 0.24 13.75 8.32 -92.71 -0.77 12.98 16 33 H 0.06 2.15 7.24 -2.38 -0.02 2.13 16 34 H 0.05 2.11 5.95 -2.39 -0.01 2.10 16 35 H 0.06 2.03 6.84 -2.39 -0.02 2.02 16 36 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 38 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 40 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.04 1.76 7.57 -2.39 -0.02 1.74 16 Total: -1.00 -59.15 305.20 3.20 -55.95 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.32 Total: 17.16 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: 3.70 Total: -20.89 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -1.02 Total: -79.73 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -1.83 Total: -19.01 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.53 kcal Total: -59.15 3.20 -55.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686005787.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.412 kcal (2) G-P(sol) polarization free energy of solvation -59.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds