Wall clock time and date at job start Mon Mar 30 2020 04:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46900 * 2 1 4 4 H 1.09001 * 109.47049 * 186.78887 * 3 2 1 5 5 C 1.50693 * 109.46863 * 66.78730 * 3 2 1 6 6 H 1.08002 * 120.00091 * 244.80399 * 5 3 2 7 7 C 1.37872 * 120.00287 * 64.81335 * 5 3 2 8 8 N 1.31521 * 119.99913 * 6.71491 * 7 5 3 9 9 Si 1.86802 * 120.00260 * 186.71925 * 7 5 3 10 10 H 1.48496 * 109.47251 * 179.97438 * 9 7 5 11 11 H 1.48503 * 109.46956 * 299.99577 * 9 7 5 12 12 H 1.48505 * 109.47077 * 59.99522 * 9 7 5 13 13 N 1.46902 * 109.47319 * 306.78259 * 3 2 1 14 14 C 1.46896 * 111.00369 * 269.23449 * 13 3 2 15 15 C 1.52999 * 110.01669 * 190.37734 * 14 13 3 16 16 C 1.52999 * 109.46922 * 303.83944 * 15 14 13 17 17 O 1.42895 * 109.47239 * 184.96577 * 16 15 14 18 18 C 1.53871 * 110.03511 * 68.97862 * 14 13 3 19 19 C 1.54369 * 106.54769 * 240.72924 * 18 14 13 20 20 C 1.54883 * 104.21524 * 23.57963 * 19 18 14 21 21 C 1.54272 * 110.02937 * 311.76377 * 14 13 3 22 22 H 1.09004 * 109.47099 * 184.96414 * 1 2 3 23 23 H 1.09000 * 109.46732 * 304.95493 * 1 2 3 24 24 H 1.08994 * 109.47858 * 64.96334 * 1 2 3 25 25 H 1.09004 * 109.47072 * 240.00758 * 2 1 3 26 26 H 1.08991 * 109.47782 * 120.00520 * 2 1 3 27 27 H 0.96994 * 120.00086 * 355.45632 * 8 7 5 28 28 H 1.00901 * 110.99676 * 145.27685 * 13 3 2 29 29 H 1.09000 * 109.47368 * 63.83697 * 15 14 13 30 30 H 1.09005 * 109.46952 * 183.84314 * 15 14 13 31 31 H 1.09006 * 109.46973 * 304.96094 * 16 15 14 32 32 H 1.08997 * 109.47540 * 64.95841 * 16 15 14 33 33 H 0.96704 * 114.00235 * 184.99754 * 17 16 15 34 34 H 1.08999 * 110.03146 * 0.02562 * 18 14 13 35 35 H 1.09009 * 110.03135 * 121.43074 * 18 14 13 36 36 H 1.08998 * 110.46770 * 264.89573 * 19 18 14 37 37 H 1.09009 * 110.60088 * 142.32159 * 19 18 14 38 38 H 1.09008 * 110.75784 * 203.76033 * 20 19 18 39 39 H 1.09002 * 110.76243 * 80.38651 * 20 19 18 40 40 H 1.09004 * 110.48591 * 214.35585 * 21 14 13 41 41 H 1.09001 * 110.48801 * 336.99715 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1231 1.4449 -0.1215 5 6 1.6793 2.1027 1.3058 6 1 0.9912 2.9350 1.3181 7 6 2.2280 1.6443 2.4846 8 7 3.1641 0.7208 2.4590 9 14 1.6418 2.3349 4.1184 10 1 2.3830 1.6811 5.2266 11 1 1.8877 3.7990 4.1537 12 1 0.1882 2.0731 4.2734 13 7 1.4212 2.1806 -1.1093 14 6 2.2442 2.0942 -2.3230 15 6 1.7230 3.0703 -3.3797 16 6 0.2467 2.7803 -3.6577 17 8 -0.2095 3.6133 -4.7254 18 6 2.2206 0.6580 -2.8747 19 6 3.6800 0.1553 -2.8544 20 6 4.3672 1.0259 -1.7733 21 6 3.7155 2.4146 -1.9877 22 1 -0.3633 -1.0238 0.0889 23 1 -0.3633 0.5888 0.8423 24 1 -0.3634 0.4349 -0.9310 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8898 27 1 3.4219 0.3149 1.6166 28 1 1.2528 3.1423 -0.8542 29 1 1.8301 4.0919 -3.0150 30 1 2.2962 2.9505 -4.2991 31 1 0.1285 1.7335 -3.9378 32 1 -0.3389 2.9849 -2.7615 33 1 -1.1567 3.5385 -4.9056 34 1 1.5982 0.0252 -2.2421 35 1 1.8386 0.6564 -3.8956 36 1 4.1503 0.3109 -3.8253 37 1 3.7189 -0.8983 -2.5772 38 1 5.4430 1.0739 -1.9423 39 1 4.1485 0.6465 -0.7751 40 1 4.1915 2.9352 -2.8187 41 1 3.7783 3.0102 -1.0770 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687321131.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:34 Heat of formation + Delta-G solvation = -58.183795 kcal Electronic energy + Delta-G solvation = -19284.831651 eV Core-core repulsion = 16585.201787 eV Total energy + Delta-G solvation = -2699.629864 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.57725 -36.59076 -34.81950 -32.49585 -31.32632 -29.96244 -28.05536 -26.24955 -24.72005 -23.51940 -22.21973 -20.27866 -19.58872 -18.11360 -17.37056 -16.74227 -15.97078 -14.82577 -14.47488 -14.29056 -13.74556 -13.72707 -13.32486 -12.87363 -12.50512 -12.28449 -12.23073 -11.71143 -11.16913 -11.06426 -10.81398 -10.70581 -10.67945 -10.59447 -10.51984 -10.27384 -10.17590 -10.07006 -9.90527 -9.76558 -9.63512 -9.47829 -8.42511 -8.19752 -7.22585 -6.32545 -4.03790 3.42730 3.45034 3.62805 4.38377 4.51972 4.95155 5.05035 5.17710 5.39521 5.41009 5.51456 5.59645 5.70917 5.89876 5.95036 6.00051 6.08008 6.14266 6.22355 6.27411 6.34929 6.38255 6.42541 6.45983 6.47938 6.59616 6.64526 6.80010 6.85428 7.07125 7.24300 7.26677 7.55583 7.65149 7.77426 7.94176 8.15002 8.56061 8.65037 8.91388 9.66431 11.04133 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024071 B = 0.008278 C = 0.007400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.925532 B = 3381.504736 C = 3782.964063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.116 4.116 3 C 0.184 3.816 4 H 0.033 0.967 5 C -0.595 4.595 6 H 0.049 0.951 7 C 0.023 3.977 8 N -0.912 5.912 9 Si 1.063 2.937 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.289 1.289 13 N -0.668 5.668 14 C 0.117 3.883 15 C -0.102 4.102 16 C 0.081 3.919 17 O -0.586 6.586 18 C -0.127 4.127 19 C -0.121 4.121 20 C -0.132 4.132 21 C -0.146 4.146 22 H 0.015 0.985 23 H 0.055 0.945 24 H 0.047 0.953 25 H 0.033 0.967 26 H 0.056 0.944 27 H 0.271 0.729 28 H 0.332 0.668 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.374 0.626 34 H 0.094 0.906 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.053 0.947 39 H 0.089 0.911 40 H 0.055 0.945 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.589 0.989 -10.397 10.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.155 4.155 3 C 0.076 3.924 4 H 0.050 0.950 5 C -0.634 4.634 6 H 0.067 0.933 7 C -0.182 4.182 8 N -0.549 5.549 9 Si 0.892 3.108 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.215 1.215 13 N -0.299 5.299 14 C 0.025 3.975 15 C -0.140 4.140 16 C 0.004 3.996 17 O -0.391 6.391 18 C -0.164 4.164 19 C -0.159 4.159 20 C -0.169 4.169 21 C -0.185 4.185 22 H 0.034 0.966 23 H 0.074 0.926 24 H 0.066 0.934 25 H 0.051 0.949 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.150 0.850 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.220 0.780 34 H 0.113 0.887 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.074 0.926 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.111 0.573 -8.934 9.198 hybrid contribution -0.141 0.474 -1.336 1.425 sum -2.252 1.048 -10.271 10.567 Atomic orbital electron populations 1.21427 0.97026 0.97638 1.01670 1.21807 0.95846 0.99021 0.98800 1.19672 0.94157 0.90487 0.88084 0.95020 1.22077 1.30523 1.18284 0.92515 0.93287 1.25616 0.93946 0.96183 1.02415 1.70808 1.26776 1.26650 1.30685 0.83617 0.75843 0.75542 0.75769 1.20949 1.21712 1.21545 1.60822 1.46888 1.17813 1.04346 1.21488 0.90641 0.93918 0.91481 1.21593 0.94619 0.99379 0.98409 1.22179 0.95686 0.92837 0.88869 1.86429 1.28785 1.68066 1.55816 1.22630 0.96901 0.96543 1.00339 1.22322 0.96150 0.99147 0.98289 1.22814 0.98229 0.95380 1.00439 1.23027 0.96946 0.97541 1.01004 0.96607 0.92555 0.93433 0.94863 0.92537 0.91746 0.84995 0.91999 0.91748 0.93718 0.92318 0.78037 0.88742 0.92754 0.92696 0.92271 0.92840 0.89251 0.92631 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.51 9.38 37.16 0.35 -2.17 16 2 C -0.12 -2.59 4.66 -26.73 -0.12 -2.72 16 3 C 0.18 4.18 1.11 -68.87 -0.08 4.10 16 4 H 0.03 0.77 2.56 -51.93 -0.13 0.64 16 5 C -0.60 -15.58 7.49 -34.45 -0.26 -15.84 16 6 H 0.05 1.30 7.59 -52.49 -0.40 0.90 16 7 C 0.02 0.62 5.19 -17.82 -0.09 0.53 16 8 N -0.91 -26.25 13.04 55.43 0.72 -25.53 16 9 Si 1.06 24.72 29.91 -169.99 -5.08 19.63 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.67 -12.98 4.27 -93.13 -0.40 -13.38 16 14 C 0.12 1.97 0.73 -130.48 -0.09 1.88 16 15 C -0.10 -1.56 4.35 -26.73 -0.12 -1.68 16 16 C 0.08 1.17 6.64 37.16 0.25 1.42 16 17 O -0.59 -7.99 13.66 -35.23 -0.48 -8.47 16 18 C -0.13 -2.05 4.93 -25.56 -0.13 -2.17 16 19 C -0.12 -1.87 6.60 -25.02 -0.17 -2.04 16 20 C -0.13 -2.27 6.31 -24.74 -0.16 -2.43 16 21 C -0.15 -2.53 5.34 -25.07 -0.13 -2.66 16 22 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 23 H 0.06 1.29 7.30 -51.93 -0.38 0.91 16 24 H 0.05 0.93 7.60 -51.93 -0.39 0.54 16 25 H 0.03 0.68 4.99 -51.93 -0.26 0.43 16 26 H 0.06 1.42 6.11 -51.93 -0.32 1.11 16 27 H 0.27 7.69 5.85 -40.82 -0.24 7.45 16 28 H 0.33 6.71 7.99 -39.29 -0.31 6.39 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.04 0.63 6.71 -51.93 -0.35 0.29 16 32 H 0.06 0.88 7.70 -51.93 -0.40 0.48 16 33 H 0.37 3.35 9.12 45.56 0.42 3.77 16 34 H 0.09 1.69 4.44 -51.93 -0.23 1.46 16 35 H 0.05 0.80 6.72 -51.92 -0.35 0.45 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 38 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 39 H 0.09 1.82 5.59 -51.93 -0.29 1.53 16 40 H 0.05 0.87 7.86 -51.93 -0.41 0.46 16 41 H 0.07 1.40 7.28 -51.93 -0.38 1.02 16 LS Contribution 299.18 15.07 4.51 4.51 Total: -1.00 -28.29 299.18 -7.23 -35.52 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -5.75 Total: 11.49 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: -0.75 Total: -23.77 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.32 Total: -38.91 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -0.48 Total: -8.47 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -5.08 Total: 19.63 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.29 -7.23 -35.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687321131.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.660 kcal (2) G-P(sol) polarization free energy of solvation -28.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds