Wall clock time and date at job start Mon Mar 30 2020 04:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47682 * 2 1 4 4 H 1.08992 * 109.47055 * 302.97529 * 3 2 1 5 5 C 1.50693 * 109.47382 * 182.96959 * 3 2 1 6 6 H 1.08005 * 120.00377 * 266.67399 * 5 3 2 7 7 C 1.37879 * 120.00036 * 86.67751 * 5 3 2 8 8 N 1.31510 * 120.00155 * 185.18033 * 7 5 3 9 9 Si 1.86803 * 119.99945 * 5.18321 * 7 5 3 10 10 H 1.48498 * 109.46857 * 93.52959 * 9 7 5 11 11 H 1.48491 * 109.47268 * 213.53308 * 9 7 5 12 12 H 1.48499 * 109.46762 * 333.53654 * 9 7 5 13 13 N 1.46907 * 109.46950 * 62.97179 * 3 2 1 14 14 C 1.46847 * 111.00021 * 60.48990 * 13 3 2 15 15 C 1.53035 * 109.52119 * 185.84155 * 14 13 3 16 16 C 1.53111 * 109.27898 * 300.82123 * 15 14 13 17 17 C 1.53120 * 109.16199 * 57.65744 * 16 15 14 18 18 C 1.46845 * 111.00007 * 184.70697 * 13 3 2 19 19 H 1.09005 * 109.44715 * 294.16538 * 18 13 3 20 20 C 1.52988 * 109.46448 * 54.14236 * 18 13 3 21 21 H 1.09005 * 109.47600 * 303.10075 * 20 18 13 22 22 C 1.53004 * 109.47204 * 183.10551 * 20 18 13 23 23 O 1.42894 * 109.47439 * 63.10505 * 20 18 13 24 24 H 1.09001 * 109.47078 * 59.99420 * 1 2 3 25 25 H 1.09002 * 109.47420 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47334 * 299.99973 * 1 2 3 27 27 H 1.09003 * 109.47210 * 239.99542 * 2 1 3 28 28 H 1.09001 * 109.47078 * 120.00580 * 2 1 3 29 29 H 0.97003 * 120.00202 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.46067 * 65.82317 * 14 13 3 31 31 H 1.08998 * 109.46535 * 305.86057 * 14 13 3 32 32 H 1.09003 * 109.50009 * 180.88168 * 15 14 13 33 33 H 1.08999 * 109.50301 * 60.76588 * 15 14 13 34 34 H 1.09004 * 109.52288 * 177.56253 * 16 15 14 35 35 H 1.09001 * 109.52417 * 297.75071 * 16 15 14 36 36 H 1.08999 * 109.50317 * 62.28473 * 17 16 15 37 37 H 1.08998 * 109.50289 * 182.36449 * 17 16 15 38 38 H 1.09004 * 109.46984 * 59.99503 * 22 20 18 39 39 H 1.08999 * 109.47365 * 179.97438 * 22 20 18 40 40 H 1.09000 * 109.47123 * 299.99985 * 22 20 18 41 41 H 0.96697 * 113.99978 * 299.99935 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6339 1.9714 -0.8621 5 6 3.5452 1.4430 -0.0736 6 1 4.1302 1.4813 0.8334 7 6 4.1755 1.3946 -1.2989 8 7 5.4851 1.2923 -1.3611 9 14 3.1692 1.4746 -2.8707 10 1 3.0839 2.8833 -3.3326 11 1 3.8212 0.6487 -3.9184 12 1 1.8025 0.9555 -2.6103 13 7 1.6099 2.1139 1.2338 14 6 2.1491 1.4340 2.4184 15 6 1.5654 2.0691 3.6825 16 6 1.9286 3.5562 3.7150 17 6 1.3975 4.2311 2.4473 18 6 1.9860 3.5333 1.2190 19 1 3.0723 3.6211 1.2370 20 6 1.4422 4.1915 -0.0505 21 1 1.8186 3.6606 -0.9250 22 6 1.8992 5.6507 -0.1043 23 8 0.0143 4.1397 -0.0399 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8899 29 1 5.9286 1.2586 -2.2232 30 1 3.2346 1.5318 2.4307 31 1 1.8802 0.3782 2.3851 32 1 1.9778 1.5745 4.5620 33 1 0.4810 1.9593 3.6775 34 1 1.4784 4.0220 4.5916 35 1 3.0122 3.6656 3.7593 36 1 0.3104 4.1554 2.4229 37 1 1.6893 5.2813 2.4447 38 1 2.9885 5.6902 -0.1124 39 1 1.5122 6.1196 -1.0090 40 1 1.5230 6.1818 0.7700 41 1 -0.3465 3.2432 -0.0063 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688025705.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:00 Heat of formation + Delta-G solvation = -63.003965 kcal Electronic energy + Delta-G solvation = -19642.293076 eV Core-core repulsion = 16942.454193 eV Total energy + Delta-G solvation = -2699.838883 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.31075 -36.02184 -34.78801 -32.13270 -31.59876 -30.68233 -28.63527 -27.09725 -23.76444 -23.46683 -22.40470 -20.29203 -19.67133 -18.72225 -17.06497 -16.20213 -15.76007 -14.59524 -14.35977 -14.22776 -13.53850 -13.43685 -13.26253 -12.86007 -12.59281 -12.46969 -12.10979 -11.91977 -11.75144 -11.63646 -11.27559 -10.99622 -10.87084 -10.80142 -10.49202 -10.39243 -10.06908 -10.00375 -9.96686 -9.75594 -9.44978 -9.35699 -8.83657 -8.57830 -7.16185 -6.17061 -4.17340 3.20061 3.30649 3.33104 4.32842 4.74416 4.91466 5.16354 5.28523 5.36828 5.43567 5.66268 5.75742 5.85388 5.94216 5.98696 6.06767 6.13945 6.16249 6.22203 6.23953 6.34161 6.41824 6.42531 6.48755 6.50831 6.57363 6.68601 6.72623 6.76950 6.80123 6.95278 6.99623 7.17581 7.22968 7.55315 8.07429 8.16606 8.28622 8.42210 8.87921 9.47417 10.95798 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019863 B = 0.011349 C = 0.010159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.310333 B = 2466.533258 C = 2755.463274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C 0.171 3.829 4 H 0.043 0.957 5 C -0.542 4.542 6 H 0.076 0.924 7 C 0.078 3.922 8 N -0.895 5.895 9 Si 0.862 3.138 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.256 1.256 13 N -0.525 5.525 14 C 0.060 3.940 15 C -0.115 4.115 16 C -0.119 4.119 17 C -0.105 4.105 18 C 0.065 3.935 19 H 0.057 0.943 20 C 0.107 3.893 21 H 0.061 0.939 22 C -0.144 4.144 23 O -0.570 6.570 24 H 0.040 0.960 25 H 0.032 0.968 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.263 0.737 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.391 3.277 5.414 10.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C 0.064 3.936 4 H 0.061 0.939 5 C -0.581 4.581 6 H 0.094 0.906 7 C -0.125 4.125 8 N -0.533 5.533 9 Si 0.689 3.311 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.181 1.181 13 N -0.250 5.250 14 C -0.069 4.069 15 C -0.153 4.153 16 C -0.156 4.156 17 C -0.143 4.143 18 C -0.045 4.045 19 H 0.075 0.925 20 C 0.048 3.952 21 H 0.078 0.922 22 C -0.201 4.201 23 O -0.377 6.377 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -8.670 3.881 5.286 10.871 hybrid contribution 0.703 -0.653 -1.032 1.409 sum -7.967 3.229 4.254 9.592 Atomic orbital electron populations 1.21776 0.97804 0.99361 1.01362 1.21813 0.93417 0.99055 1.00801 1.19848 0.94384 0.90738 0.88603 0.93897 1.21576 0.90414 1.51639 0.94429 0.90633 1.24979 0.94580 0.94098 0.98827 1.69923 1.08273 1.49704 1.25367 0.87094 0.81573 0.78585 0.83881 1.20235 1.21328 1.18062 1.62341 1.58529 1.00922 1.03173 1.21932 0.97824 0.97827 0.89271 1.21606 1.00918 0.95357 0.97450 1.21558 1.00450 0.96110 0.97509 1.21550 1.01206 0.97893 0.93682 1.22017 0.98821 0.89347 0.94271 0.92491 1.21813 0.80721 0.95719 0.96941 0.92154 1.21778 1.01102 0.95331 1.01936 1.86295 1.20424 1.33640 1.97323 0.94113 0.94883 0.92110 0.93129 0.92743 0.92683 0.94097 0.91266 0.92803 0.92004 0.92984 0.92653 0.91279 0.92542 0.91299 0.92654 0.92146 0.77320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.78 37.15 0.36 -2.10 16 2 C -0.11 -2.28 4.83 -26.74 -0.13 -2.41 16 3 C 0.17 3.71 0.91 -68.87 -0.06 3.65 16 4 H 0.04 0.97 3.38 -51.93 -0.18 0.80 16 5 C -0.54 -14.09 7.45 -34.44 -0.26 -14.35 16 6 H 0.08 2.18 6.32 -52.48 -0.33 1.85 16 7 C 0.08 2.14 5.47 -17.82 -0.10 2.05 16 8 N -0.90 -26.42 13.96 55.43 0.77 -25.64 16 9 Si 0.86 20.67 26.15 -169.99 -4.44 16.23 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.26 -5.83 6.06 56.52 0.34 -5.49 16 13 N -0.53 -9.93 3.37 -220.15 -0.74 -10.67 16 14 C 0.06 1.09 4.81 -3.84 -0.02 1.07 16 15 C -0.12 -1.74 6.09 -26.66 -0.16 -1.90 16 16 C -0.12 -1.75 6.00 -26.61 -0.16 -1.91 16 17 C -0.11 -1.67 4.90 -26.65 -0.13 -1.80 16 18 C 0.06 1.20 1.38 -67.73 -0.09 1.11 16 19 H 0.06 1.23 7.43 -51.93 -0.39 0.85 16 20 C 0.11 1.98 2.91 -26.74 -0.08 1.90 16 21 H 0.06 1.28 5.74 -51.93 -0.30 0.99 16 22 C -0.14 -2.34 9.28 37.16 0.34 -1.99 16 23 O -0.57 -10.10 12.51 -35.23 -0.44 -10.54 16 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.99 7.69 -51.93 -0.40 0.59 16 27 H 0.05 1.09 7.05 -51.93 -0.37 0.73 16 28 H 0.05 1.09 6.14 -51.93 -0.32 0.78 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 30 H 0.04 0.86 6.38 -51.93 -0.33 0.53 16 31 H 0.07 1.26 5.96 -51.93 -0.31 0.95 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.11 7.58 -51.93 -0.39 0.72 16 37 H 0.06 0.84 6.55 -51.93 -0.34 0.50 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.89 6.53 -51.93 -0.34 0.55 16 41 H 0.38 6.25 8.63 45.56 0.39 6.64 16 LS Contribution 298.90 15.07 4.50 4.50 Total: -1.00 -27.66 298.90 -7.00 -34.67 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -6.17 Total: 8.14 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: -0.48 Total: -16.69 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: 0.03 Total: -36.32 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: -0.44 Total: -10.54 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.44 Total: 16.23 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -27.66 -7.00 -34.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688025705.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.338 kcal (2) G-P(sol) polarization free energy of solvation -27.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds