Wall clock time and date at job start Mon Mar 30 2020 04:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47682 * 2 1 4 4 H 1.08992 * 109.47055 * 302.97529 * 3 2 1 5 5 C 1.50693 * 109.47382 * 182.96959 * 3 2 1 6 6 H 1.08005 * 120.00377 * 266.67399 * 5 3 2 7 7 C 1.37879 * 120.00036 * 86.67751 * 5 3 2 8 8 N 1.31510 * 120.00155 * 185.18033 * 7 5 3 9 9 Si 1.86803 * 119.99945 * 5.18321 * 7 5 3 10 10 H 1.48498 * 109.46857 * 93.52959 * 9 7 5 11 11 H 1.48491 * 109.47268 * 213.53308 * 9 7 5 12 12 H 1.48499 * 109.46762 * 333.53654 * 9 7 5 13 13 N 1.46907 * 109.46950 * 62.97179 * 3 2 1 14 14 C 1.46847 * 111.00021 * 60.48990 * 13 3 2 15 15 C 1.53035 * 109.52119 * 185.84155 * 14 13 3 16 16 C 1.53111 * 109.27898 * 300.82123 * 15 14 13 17 17 C 1.53120 * 109.16199 * 57.65744 * 16 15 14 18 18 C 1.46845 * 111.00007 * 184.70697 * 13 3 2 19 19 H 1.09005 * 109.44715 * 294.16538 * 18 13 3 20 20 C 1.52988 * 109.46448 * 54.14236 * 18 13 3 21 21 H 1.09005 * 109.47600 * 303.10075 * 20 18 13 22 22 C 1.53004 * 109.47204 * 183.10551 * 20 18 13 23 23 O 1.42894 * 109.47439 * 63.10505 * 20 18 13 24 24 H 1.09001 * 109.47078 * 59.99420 * 1 2 3 25 25 H 1.09002 * 109.47420 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47334 * 299.99973 * 1 2 3 27 27 H 1.09003 * 109.47210 * 239.99542 * 2 1 3 28 28 H 1.09001 * 109.47078 * 120.00580 * 2 1 3 29 29 H 0.97003 * 120.00202 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.46067 * 65.82317 * 14 13 3 31 31 H 1.08998 * 109.46535 * 305.86057 * 14 13 3 32 32 H 1.09003 * 109.50009 * 180.88168 * 15 14 13 33 33 H 1.08999 * 109.50301 * 60.76588 * 15 14 13 34 34 H 1.09004 * 109.52288 * 177.56253 * 16 15 14 35 35 H 1.09001 * 109.52417 * 297.75071 * 16 15 14 36 36 H 1.08999 * 109.50317 * 62.28473 * 17 16 15 37 37 H 1.08998 * 109.50289 * 182.36449 * 17 16 15 38 38 H 1.09004 * 109.46984 * 59.99503 * 22 20 18 39 39 H 1.08999 * 109.47365 * 179.97438 * 22 20 18 40 40 H 1.09000 * 109.47123 * 299.99985 * 22 20 18 41 41 H 0.96697 * 113.99978 * 299.99935 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6339 1.9714 -0.8621 5 6 3.5452 1.4430 -0.0736 6 1 4.1302 1.4813 0.8334 7 6 4.1755 1.3946 -1.2989 8 7 5.4851 1.2923 -1.3611 9 14 3.1692 1.4746 -2.8707 10 1 3.0839 2.8833 -3.3326 11 1 3.8212 0.6487 -3.9184 12 1 1.8025 0.9555 -2.6103 13 7 1.6099 2.1139 1.2338 14 6 2.1491 1.4340 2.4184 15 6 1.5654 2.0691 3.6825 16 6 1.9286 3.5562 3.7150 17 6 1.3975 4.2311 2.4473 18 6 1.9860 3.5333 1.2190 19 1 3.0723 3.6211 1.2370 20 6 1.4422 4.1915 -0.0505 21 1 1.8186 3.6606 -0.9250 22 6 1.8992 5.6507 -0.1043 23 8 0.0143 4.1397 -0.0399 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8932 -0.5139 0.8899 29 1 5.9286 1.2586 -2.2232 30 1 3.2346 1.5318 2.4307 31 1 1.8802 0.3782 2.3851 32 1 1.9778 1.5745 4.5620 33 1 0.4810 1.9593 3.6775 34 1 1.4784 4.0220 4.5916 35 1 3.0122 3.6656 3.7593 36 1 0.3104 4.1554 2.4229 37 1 1.6893 5.2813 2.4447 38 1 2.9885 5.6902 -0.1124 39 1 1.5122 6.1196 -1.0090 40 1 1.5230 6.1818 0.7700 41 1 -0.3465 3.2432 -0.0063 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688025705.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:00 Heat of formation + Delta-G solvation = -82.298714 kcal Electronic energy + Delta-G solvation = -19643.129759 eV Core-core repulsion = 16942.454193 eV Total energy + Delta-G solvation = -2700.675566 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.83148 -37.50440 -36.32609 -34.16427 -33.00996 -32.13699 -30.00280 -28.91848 -25.35091 -24.95782 -23.96899 -21.69787 -21.19057 -20.39968 -18.92532 -17.76004 -17.34531 -16.24331 -16.05744 -15.75465 -15.00215 -14.91389 -14.81071 -14.48796 -14.16979 -13.88722 -13.63518 -13.33032 -13.26060 -13.18787 -12.85051 -12.63979 -12.43084 -12.25201 -11.98972 -11.83066 -11.66793 -11.59429 -11.50458 -11.39378 -11.20433 -10.88802 -10.68072 -10.29356 -8.87729 -8.31944 -6.34266 1.26889 1.31570 1.40038 2.29405 3.02376 3.25211 3.51498 3.89534 4.03002 4.13599 4.28931 4.35836 4.44832 4.50377 4.54023 4.59314 4.73748 4.75322 4.86399 4.87197 4.94453 5.02502 5.06600 5.12966 5.15889 5.17082 5.24866 5.29686 5.36421 5.39747 5.42588 5.51133 5.54215 5.66985 5.71275 6.21145 6.43646 6.54858 6.75457 6.91014 7.34009 8.84821 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019863 B = 0.011349 C = 0.010159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.310333 B = 2466.533258 C = 2755.463274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.113 4.113 3 C 0.176 3.824 4 H 0.042 0.958 5 C -0.529 4.529 6 H 0.033 0.967 7 C 0.021 3.979 8 N -0.947 5.947 9 Si 0.919 3.081 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.233 1.233 13 N -0.509 5.509 14 C 0.060 3.940 15 C -0.107 4.107 16 C -0.118 4.118 17 C -0.098 4.098 18 C 0.066 3.934 19 H 0.016 0.984 20 C 0.109 3.891 21 H 0.029 0.971 22 C -0.142 4.142 23 O -0.564 6.564 24 H 0.044 0.956 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.049 0.951 29 H 0.262 0.738 30 H 0.001 0.999 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.040 0.960 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.497 3.856 6.097 13.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.152 4.152 3 C 0.068 3.932 4 H 0.060 0.940 5 C -0.568 4.568 6 H 0.051 0.949 7 C -0.177 4.177 8 N -0.588 5.588 9 Si 0.743 3.257 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.156 1.156 13 N -0.232 5.232 14 C -0.069 4.069 15 C -0.145 4.145 16 C -0.155 4.155 17 C -0.135 4.135 18 C -0.044 4.044 19 H 0.034 0.966 20 C 0.050 3.950 21 H 0.047 0.953 22 C -0.200 4.200 23 O -0.371 6.371 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.019 0.981 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -11.808 4.459 5.990 13.971 hybrid contribution 1.725 -0.838 -1.147 2.234 sum -10.084 3.621 4.842 11.758 Atomic orbital electron populations 1.21665 0.94444 1.01028 1.02066 1.21732 0.96343 0.97240 0.99865 1.19757 0.91180 0.92235 0.90055 0.94023 1.21826 0.92837 1.49535 0.92608 0.94912 1.25749 0.95372 0.94296 1.02242 1.70073 1.10248 1.52429 1.26026 0.86173 0.81143 0.78637 0.79753 1.19895 1.21616 1.15590 1.62401 1.57420 1.01100 1.02309 1.21978 0.95664 0.98407 0.90817 1.21563 1.01618 0.95415 0.95874 1.21572 0.99783 0.95987 0.98190 1.21509 1.01324 0.98269 0.92432 1.22044 0.96599 0.89414 0.96315 0.96607 1.21715 0.81231 0.96743 0.95353 0.95294 1.21769 1.00808 0.94029 1.03348 1.86300 1.19457 1.34192 1.97190 0.93647 0.92796 0.91107 0.94760 0.93193 0.92849 0.98050 0.91204 0.91074 0.90392 0.89887 0.94133 0.90427 0.91310 0.91938 0.91710 0.90244 0.76645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.13 9.78 71.98 0.70 -3.43 16 2 C -0.11 -4.47 4.83 30.59 0.15 -4.33 16 3 C 0.18 7.61 0.91 44.16 0.04 7.65 16 4 H 0.04 1.85 3.38 -2.39 -0.01 1.84 16 5 C -0.53 -28.69 7.45 25.60 0.19 -28.50 16 6 H 0.03 2.03 6.32 -2.91 -0.02 2.01 16 7 C 0.02 1.21 5.47 84.66 0.46 1.67 16 8 N -0.95 -58.59 13.96 21.45 0.30 -58.29 16 9 Si 0.92 43.27 26.15 68.60 1.79 45.07 16 10 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 11 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 12 H -0.23 -9.98 6.06 99.48 0.60 -9.38 16 13 N -0.51 -18.91 3.37 -850.44 -2.87 -21.78 16 14 C 0.06 2.17 4.81 86.32 0.42 2.58 16 15 C -0.11 -2.97 6.09 30.64 0.19 -2.78 16 16 C -0.12 -3.19 6.00 30.67 0.18 -3.00 16 17 C -0.10 -2.85 4.90 30.65 0.15 -2.70 16 18 C 0.07 2.41 1.38 44.93 0.06 2.47 16 19 H 0.02 0.72 7.43 -2.38 -0.02 0.70 16 20 C 0.11 3.91 2.91 30.59 0.09 4.00 16 21 H 0.03 1.23 5.74 -2.38 -0.01 1.22 16 22 C -0.14 -4.41 9.28 71.98 0.67 -3.74 16 23 O -0.56 -18.45 12.51 -148.98 -1.86 -20.32 16 24 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.07 2.03 7.69 -2.39 -0.02 2.02 16 27 H 0.03 1.44 7.05 -2.39 -0.02 1.43 16 28 H 0.05 1.99 6.14 -2.39 -0.01 1.97 16 29 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 30 H 0.00 0.05 6.38 -2.39 -0.02 0.04 16 31 H 0.07 2.51 5.96 -2.39 -0.01 2.49 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 2.19 7.58 -2.39 -0.02 2.18 16 37 H 0.07 1.85 6.55 -2.39 -0.02 1.84 16 38 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 39 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.08 2.15 6.53 -2.39 -0.02 2.13 16 41 H 0.38 11.50 8.63 -74.06 -0.64 10.87 16 Total: -1.00 -62.14 298.90 0.93 -61.21 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.26 Total: 24.21 kcal Atomic # 6 Polarization: -33.41 SS G_CDS: 3.30 Total: -30.11 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -2.57 Total: -80.07 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -1.86 Total: -20.32 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.79 Total: 45.07 kcal Total: -62.14 0.93 -61.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688025705.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.090 kcal (2) G-P(sol) polarization free energy of solvation -62.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds