Wall clock time and date at job start Mon Mar 30 2020 04:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47217 * 2 1 4 4 H 1.08993 * 109.46869 * 304.99640 * 3 2 1 5 5 C 1.50698 * 109.47198 * 184.99672 * 3 2 1 6 6 H 1.08005 * 120.00229 * 245.51383 * 5 3 2 7 7 C 1.37876 * 120.00067 * 65.51088 * 5 3 2 8 8 N 1.31516 * 119.99738 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00265 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46967 * 60.00356 * 9 7 5 11 11 H 1.48504 * 109.47387 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46918 * 300.00083 * 9 7 5 13 13 N 1.46902 * 109.47191 * 64.99799 * 3 2 1 14 14 C 1.46847 * 110.99963 * 42.75161 * 13 3 2 15 15 C 1.53038 * 109.52232 * 174.16158 * 14 13 3 16 16 C 1.53113 * 109.30975 * 59.16257 * 15 14 13 17 17 C 1.53115 * 109.15854 * 302.40152 * 16 15 14 18 18 C 1.46844 * 110.99835 * 278.54558 * 13 3 2 19 19 H 1.08999 * 109.46396 * 65.82129 * 18 13 3 20 20 C 1.52997 * 109.46187 * 305.85348 * 18 13 3 21 21 H 1.08995 * 109.47313 * 60.03805 * 20 18 13 22 22 C 1.52999 * 109.47097 * 180.02562 * 20 18 13 23 23 O 1.42906 * 109.47204 * 300.03696 * 20 18 13 24 24 H 1.08996 * 109.47115 * 39.77586 * 1 2 3 25 25 H 1.08997 * 109.46953 * 159.77593 * 1 2 3 26 26 H 1.08999 * 109.47260 * 279.77390 * 1 2 3 27 27 H 1.08997 * 109.47516 * 239.99615 * 2 1 3 28 28 H 1.09009 * 109.47278 * 120.00248 * 2 1 3 29 29 H 0.97007 * 119.99892 * 179.97438 * 8 7 5 30 30 H 1.09005 * 109.46157 * 54.14305 * 14 13 3 31 31 H 1.08993 * 109.46681 * 294.17931 * 14 13 3 32 32 H 1.09004 * 109.50177 * 179.12162 * 15 14 13 33 33 H 1.08999 * 109.50289 * 299.19315 * 15 14 13 34 34 H 1.09004 * 109.52138 * 62.27088 * 16 15 14 35 35 H 1.09001 * 109.52097 * 182.46014 * 16 15 14 36 36 H 1.08999 * 109.47195 * 297.65663 * 17 16 15 37 37 H 1.08997 * 109.53775 * 177.57537 * 17 16 15 38 38 H 1.09000 * 109.47723 * 59.99710 * 22 20 18 39 39 H 1.09001 * 109.47332 * 180.02562 * 22 20 18 40 40 H 1.09002 * 109.47422 * 299.99792 * 22 20 18 41 41 H 0.96699 * 113.99764 * 300.00200 * 23 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9814 -0.8418 5 6 3.5419 1.4443 -0.1237 6 1 4.1505 1.8077 0.6911 7 6 4.1392 0.9819 -1.2772 8 7 3.3981 0.5388 -2.2693 9 14 6.0009 0.9834 -1.4304 10 1 6.5863 0.1375 -0.3594 11 1 6.3889 0.4416 -2.7575 12 1 6.5074 2.3729 -1.2963 13 7 1.6514 2.0993 1.2552 14 6 1.8572 1.2059 2.4023 15 6 1.5816 1.9684 3.7003 16 6 0.1414 2.4879 3.6863 17 6 -0.0605 3.3759 2.4553 18 6 0.2627 2.5726 1.1934 19 1 -0.4098 1.7176 1.1250 20 6 0.0819 3.4628 -0.0378 21 1 0.3105 2.8904 -0.9367 22 6 -1.3648 3.9566 -0.1020 23 8 0.9644 4.5833 0.0507 24 1 -0.3633 0.7898 -0.6575 25 1 -0.3633 -0.9643 -0.3552 26 1 -0.3634 0.1745 1.0127 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 3.8183 0.2139 -3.0810 30 1 2.8866 0.8473 2.4032 31 1 1.1773 0.3572 2.3283 32 1 1.7194 1.3007 4.5508 33 1 2.2710 2.8087 3.7821 34 1 -0.5492 1.6457 3.6445 35 1 -0.0451 3.0687 4.5896 36 1 0.6025 4.2388 2.5171 37 1 -1.0958 3.7144 2.4160 38 1 -1.5938 4.5290 0.7969 39 1 -1.4938 4.5904 -0.9794 40 1 -2.0379 3.1019 -0.1697 41 1 0.8179 5.1388 0.8285 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688025708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:07 Heat of formation + Delta-G solvation = -69.752206 kcal Electronic energy + Delta-G solvation = -19558.729632 eV Core-core repulsion = 16858.598123 eV Total energy + Delta-G solvation = -2700.131508 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.01298 -37.67645 -36.18298 -33.98024 -32.78964 -31.75126 -29.87702 -28.85071 -25.47224 -25.24998 -23.91647 -21.79338 -21.34011 -20.11000 -18.30731 -17.62991 -16.83732 -16.37370 -16.12447 -15.81922 -15.44454 -14.95202 -14.77667 -14.18038 -14.11126 -13.69477 -13.41379 -13.14383 -13.08331 -12.90917 -12.74495 -12.70624 -12.50625 -12.23471 -12.07453 -11.97124 -11.80506 -11.58014 -11.41494 -11.29460 -10.82063 -10.70197 -10.46831 -10.25829 -8.53796 -8.05585 -6.12547 1.39747 1.42133 1.49037 2.45177 3.21738 3.35357 3.78606 3.92378 4.03727 4.13792 4.30545 4.33159 4.40942 4.48031 4.50057 4.55352 4.64266 4.69576 4.83693 4.89443 4.96246 5.04917 5.08580 5.12550 5.16555 5.21740 5.26628 5.32427 5.36553 5.39044 5.49057 5.60646 5.67835 5.83438 5.85581 6.36124 6.71669 6.91466 7.01570 7.11851 7.54944 9.00466 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023468 B = 0.009080 C = 0.008399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.851042 B = 3082.906221 C = 3332.912354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.143 4.143 3 C 0.221 3.779 4 H 0.020 0.980 5 C -0.504 4.504 6 H 0.044 0.956 7 C 0.009 3.991 8 N -0.922 5.922 9 Si 0.950 3.050 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.278 1.278 13 N -0.524 5.524 14 C 0.061 3.939 15 C -0.112 4.112 16 C -0.110 4.110 17 C -0.112 4.112 18 C 0.037 3.963 19 H 0.057 0.943 20 C 0.104 3.896 21 H 0.062 0.938 22 C -0.173 4.173 23 O -0.568 6.568 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.037 0.963 29 H 0.258 0.742 30 H 0.044 0.956 31 H 0.025 0.975 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.325 4.033 10.165 15.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.183 4.183 3 C 0.114 3.886 4 H 0.038 0.962 5 C -0.543 4.543 6 H 0.063 0.937 7 C -0.188 4.188 8 N -0.563 5.563 9 Si 0.777 3.223 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.203 1.203 13 N -0.248 5.248 14 C -0.067 4.067 15 C -0.150 4.150 16 C -0.148 4.148 17 C -0.149 4.149 18 C -0.071 4.071 19 H 0.075 0.925 20 C 0.045 3.955 21 H 0.080 0.920 22 C -0.231 4.231 23 O -0.374 6.374 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -9.774 4.123 9.500 14.239 hybrid contribution 0.690 -0.855 -0.360 1.156 sum -9.084 3.268 9.139 13.294 Atomic orbital electron populations 1.22013 0.96496 1.00535 1.00529 1.22067 0.94400 1.01536 1.00309 1.19136 0.93678 0.88494 0.87307 0.96189 1.21384 0.93033 1.39547 1.00319 0.93731 1.25611 1.01898 0.95669 0.95659 1.70029 1.36153 1.44201 1.05870 0.85737 0.81406 0.78168 0.77027 1.19794 1.21015 1.20321 1.62065 1.20289 1.39191 1.03258 1.21978 0.99371 0.93998 0.91368 1.21593 0.97736 0.99893 0.95791 1.21506 0.95720 0.99376 0.98193 1.21692 1.01719 0.98429 0.93076 1.22675 0.90560 0.97824 0.96076 0.92533 1.21988 0.89590 0.86811 0.97119 0.92031 1.22462 0.95042 1.02287 1.03301 1.86649 1.61036 1.40344 1.49375 0.93843 0.93420 0.91993 0.93167 0.94422 0.93316 0.93764 0.95698 0.90821 0.92455 0.92188 0.89936 0.91688 0.89379 0.89813 0.92216 0.91058 0.77614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.29 8.14 71.98 0.59 -4.70 16 2 C -0.14 -6.83 4.76 30.59 0.15 -6.69 16 3 C 0.22 11.23 1.62 44.17 0.07 11.30 16 4 H 0.02 1.16 5.11 -2.39 -0.01 1.15 16 5 C -0.50 -29.01 8.10 25.60 0.21 -28.80 16 6 H 0.04 2.62 7.69 -2.91 -0.02 2.59 16 7 C 0.01 0.54 5.30 84.65 0.45 0.99 16 8 N -0.92 -55.01 11.72 21.45 0.25 -54.76 16 9 Si 0.95 46.07 29.54 68.60 2.03 48.09 16 10 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 12 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 13 N -0.52 -21.87 4.21 -850.41 -3.58 -25.45 16 14 C 0.06 2.30 4.12 86.33 0.36 2.66 16 15 C -0.11 -3.20 6.09 30.64 0.19 -3.02 16 16 C -0.11 -2.55 6.00 30.67 0.18 -2.36 16 17 C -0.11 -2.76 4.71 30.65 0.14 -2.62 16 18 C 0.04 1.23 1.09 44.94 0.05 1.28 16 19 H 0.06 1.87 4.15 -2.39 -0.01 1.86 16 20 C 0.10 3.62 2.71 30.59 0.08 3.70 16 21 H 0.06 2.70 5.34 -2.39 -0.01 2.68 16 22 C -0.17 -4.26 9.18 71.98 0.66 -3.60 16 23 O -0.57 -21.33 13.16 -148.98 -1.96 -23.29 16 24 H 0.04 1.67 6.59 -2.39 -0.02 1.65 16 25 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.06 2.09 5.15 -2.39 -0.01 2.08 16 27 H 0.05 2.75 6.42 -2.39 -0.02 2.73 16 28 H 0.04 1.76 6.14 -2.38 -0.01 1.75 16 29 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 30 H 0.04 1.91 7.48 -2.38 -0.02 1.89 16 31 H 0.02 0.93 5.40 -2.39 -0.01 0.91 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 33 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.49 16 36 H 0.06 1.65 6.74 -2.39 -0.02 1.63 16 37 H 0.09 1.69 6.47 -2.39 -0.02 1.67 16 38 H 0.08 1.61 6.45 -2.39 -0.02 1.59 16 39 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.38 10.70 7.32 -74.06 -0.54 10.16 16 Total: -1.00 -65.79 293.52 0.34 -65.45 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 0.48 Total: 21.82 kcal Atomic # 6 Polarization: -34.99 SS G_CDS: 3.12 Total: -31.86 kcal Atomic # 7 Polarization: -76.88 SS G_CDS: -3.33 Total: -80.21 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -1.96 Total: -23.29 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -65.79 0.34 -65.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688025708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.299 kcal (2) G-P(sol) polarization free energy of solvation -65.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds