Wall clock time and date at job start Mon Mar 30 2020 04:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46881 * 2 1 4 4 H 1.08995 * 109.47115 * 303.20416 * 3 2 1 5 5 C 1.50705 * 109.46761 * 183.20718 * 3 2 1 6 6 H 1.07995 * 119.99617 * 239.99663 * 5 3 2 7 7 C 1.37870 * 120.00036 * 60.00203 * 5 3 2 8 8 N 1.31516 * 120.00505 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99796 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47175 * 269.99286 * 9 7 5 11 11 H 1.48492 * 109.47273 * 29.99436 * 9 7 5 12 12 H 1.48503 * 109.47223 * 149.99527 * 9 7 5 13 13 N 1.46898 * 109.47411 * 63.20492 * 3 2 1 14 14 C 1.46850 * 110.99751 * 66.79001 * 13 3 2 15 15 C 1.53040 * 109.52045 * 185.83701 * 14 13 3 16 16 H 1.08996 * 109.50392 * 60.76574 * 15 14 13 17 17 C 1.53002 * 109.50224 * 180.88038 * 15 14 13 18 18 C 1.53111 * 109.28005 * 300.82317 * 15 14 13 19 19 H 1.08998 * 109.52575 * 297.74694 * 18 15 14 20 20 O 1.42902 * 109.52172 * 177.56151 * 18 15 14 21 21 C 1.53115 * 109.16257 * 57.65526 * 18 15 14 22 22 H 1.08996 * 109.50346 * 62.32370 * 21 18 15 23 23 C 1.53005 * 109.50654 * 182.40429 * 21 18 15 24 24 C 1.46842 * 110.99979 * 190.99887 * 13 3 2 25 25 H 1.08995 * 109.47307 * 304.77852 * 1 2 3 26 26 H 1.08998 * 109.46742 * 64.78408 * 1 2 3 27 27 H 1.08996 * 109.47087 * 184.77998 * 1 2 3 28 28 H 1.08993 * 109.47509 * 239.99540 * 2 1 3 29 29 H 1.09005 * 109.46949 * 119.99514 * 2 1 3 30 30 H 0.96993 * 120.00411 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.46754 * 305.85599 * 14 13 3 32 32 H 1.09003 * 109.46100 * 65.83684 * 14 13 3 33 33 H 1.08999 * 109.46861 * 60.00116 * 17 15 14 34 34 H 1.09002 * 109.47151 * 180.02562 * 17 15 14 35 35 H 1.09002 * 109.47324 * 300.00584 * 17 15 14 36 36 H 0.96706 * 113.99731 * 180.02562 * 20 18 15 37 37 H 1.09002 * 109.47083 * 59.99705 * 23 21 18 38 38 H 1.08993 * 109.47547 * 179.97438 * 23 21 18 39 39 H 1.08997 * 109.46793 * 300.00205 * 23 21 18 40 40 H 1.08998 * 109.46843 * 294.17776 * 24 13 3 41 41 H 1.09001 * 109.46244 * 54.14985 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6305 1.9726 -0.8598 5 6 3.5449 1.4432 -0.0795 6 1 4.1271 1.8960 0.7094 7 6 4.1785 0.8660 -1.1594 8 7 3.4696 0.3143 -2.1200 9 14 6.0439 0.8675 -1.2582 10 1 6.5014 2.0931 -1.9611 11 1 6.6123 0.8423 0.1134 12 1 6.5010 -0.3315 -2.0057 13 7 1.6146 2.1124 1.2362 14 6 2.2763 1.5242 2.4079 15 6 1.7033 2.1449 3.6840 16 1 0.6351 1.9364 3.7423 17 6 2.4083 1.5478 4.9036 18 6 1.9276 3.6592 3.6544 19 1 2.9970 3.8688 3.6355 20 8 1.3443 4.2512 4.8170 21 6 1.2700 4.2403 2.3997 22 1 0.1949 4.0653 2.4380 23 6 1.5406 5.7447 2.3311 24 6 1.8556 3.5589 1.1607 25 1 -0.3633 0.5861 0.8440 26 1 -0.3633 0.4378 -0.9297 27 1 -0.3633 -1.0241 0.0856 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 3.9154 -0.0922 -2.8795 31 1 2.1055 0.4477 2.4193 32 1 3.3471 1.7216 2.3574 33 1 3.4762 1.7585 4.8452 34 1 1.9995 1.9899 5.8122 35 1 2.2513 0.4693 4.9222 36 1 1.4486 5.2115 4.8638 37 1 2.6158 5.9190 2.2914 38 1 1.0727 6.1577 1.4375 39 1 1.1264 6.2289 3.2154 40 1 2.9284 3.7466 1.1160 41 1 1.3792 3.9602 0.2662 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000688089827.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:28 Heat of formation + Delta-G solvation = -69.305395 kcal Electronic energy + Delta-G solvation = -19060.511728 eV Core-core repulsion = 16360.399595 eV Total energy + Delta-G solvation = -2700.112133 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.29649 -36.50246 -33.93083 -33.14115 -31.84898 -30.58555 -26.83899 -25.99434 -25.79482 -23.56629 -21.91929 -20.49210 -19.43282 -18.96603 -17.16146 -16.33674 -15.09916 -14.76828 -14.69634 -14.23052 -13.65208 -13.18754 -13.11444 -12.73656 -12.34862 -12.22486 -12.13670 -11.97710 -11.66419 -11.39828 -11.22173 -11.09882 -10.98292 -10.81557 -10.58420 -10.40541 -10.16903 -9.98044 -9.84614 -9.63248 -9.36433 -9.30429 -9.04018 -8.36855 -7.11041 -5.99564 -4.13009 3.24823 3.32580 3.35091 4.38037 4.49272 4.88557 5.02700 5.15953 5.24770 5.37033 5.51340 5.69509 5.74861 5.86883 5.98463 6.06112 6.08816 6.17249 6.27775 6.32964 6.37001 6.44615 6.50663 6.56696 6.59372 6.66794 6.73398 6.79225 6.93505 7.14386 7.20156 7.37982 7.61011 7.77093 7.84773 7.98894 8.15771 8.32853 8.48150 8.97238 9.54582 10.99579 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022438 B = 0.008079 C = 0.007537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.569286 B = 3465.107639 C = 3714.297545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.110 4.110 3 C 0.215 3.785 4 H 0.037 0.963 5 C -0.543 4.543 6 H 0.056 0.944 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.282 1.282 11 H -0.276 1.276 12 H -0.286 1.286 13 N -0.535 5.535 14 C 0.070 3.930 15 C -0.082 4.082 16 H 0.076 0.924 17 C -0.140 4.140 18 C 0.116 3.884 19 H 0.047 0.953 20 O -0.569 6.569 21 C -0.122 4.122 22 H 0.079 0.921 23 C -0.149 4.149 24 C 0.072 3.928 25 H 0.050 0.950 26 H 0.037 0.963 27 H 0.024 0.976 28 H 0.091 0.909 29 H 0.032 0.968 30 H 0.261 0.739 31 H 0.075 0.925 32 H 0.038 0.962 33 H 0.048 0.952 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.368 0.632 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.034 0.966 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.136 5.968 8.964 11.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.148 4.148 3 C 0.108 3.892 4 H 0.055 0.945 5 C -0.582 4.582 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.208 1.208 11 H -0.201 1.201 12 H -0.212 1.212 13 N -0.259 5.259 14 C -0.059 4.059 15 C -0.101 4.101 16 H 0.095 0.905 17 C -0.198 4.198 18 C 0.057 3.943 19 H 0.065 0.935 20 O -0.374 6.374 21 C -0.141 4.141 22 H 0.098 0.902 23 C -0.207 4.207 24 C -0.057 4.057 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.044 0.956 28 H 0.109 0.891 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.214 0.786 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.052 0.948 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.777 5.156 8.937 10.987 hybrid contribution 2.172 0.701 -0.485 2.334 sum -1.605 5.857 8.451 10.407 Atomic orbital electron populations 1.21724 0.98872 0.98515 1.00596 1.21586 0.92221 0.99117 1.01895 1.19255 0.92752 0.91144 0.86015 0.94471 1.21738 0.92762 1.37611 1.06087 0.92584 1.24902 0.97830 0.95055 0.95597 1.69871 1.34907 1.37812 1.09737 0.86702 0.86334 0.77539 0.78070 1.20781 1.20054 1.21160 1.62367 1.57311 1.01715 1.04500 1.21938 0.96532 0.99026 0.88364 1.21220 1.01302 0.92009 0.95570 0.90535 1.21710 0.99990 1.00286 0.97773 1.21937 0.95029 0.93622 0.83670 0.93460 1.86498 1.81570 1.24866 1.44480 1.21898 1.01668 0.94379 0.96152 0.90239 1.21811 1.01480 0.95877 1.01492 1.21824 0.98459 0.89797 0.95612 0.93046 0.94395 0.95647 0.89056 0.94906 0.92898 0.90686 0.94337 0.93279 0.92472 0.92870 0.78553 0.92834 0.92243 0.93076 0.94751 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.85 37.16 0.37 -2.48 16 2 C -0.11 -2.58 5.14 -26.73 -0.14 -2.72 16 3 C 0.21 5.19 1.72 -68.86 -0.12 5.07 16 4 H 0.04 1.00 7.97 -51.93 -0.41 0.59 16 5 C -0.54 -14.25 7.24 -34.44 -0.25 -14.50 16 6 H 0.06 1.48 5.84 -52.49 -0.31 1.18 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 8 N -0.88 -24.62 11.30 55.43 0.63 -24.00 16 9 Si 0.89 20.95 29.54 -169.99 -5.02 15.92 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.54 -11.09 3.89 -228.08 -0.89 -11.97 16 14 C 0.07 1.36 4.06 -3.83 -0.02 1.35 16 15 C -0.08 -1.36 2.61 -90.54 -0.24 -1.60 16 16 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 17 C -0.14 -2.06 9.07 37.16 0.34 -1.73 16 18 C 0.12 1.78 2.42 -26.61 -0.06 1.71 16 19 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 20 O -0.57 -7.94 12.74 -35.23 -0.45 -8.39 16 21 C -0.12 -1.87 2.61 -90.54 -0.24 -2.10 16 22 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 23 C -0.15 -1.82 8.94 37.16 0.33 -1.49 16 24 C 0.07 1.36 4.48 -3.84 -0.02 1.34 16 25 H 0.05 1.02 7.56 -51.93 -0.39 0.63 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.09 2.40 5.99 -51.93 -0.31 2.09 16 29 H 0.03 0.76 6.33 -51.93 -0.33 0.43 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.07 1.52 6.20 -51.93 -0.32 1.20 16 32 H 0.04 0.82 6.33 -51.93 -0.33 0.49 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.81 7.76 -51.93 -0.40 0.41 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.37 3.73 7.48 45.56 0.34 4.07 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.51 6.84 -51.93 -0.36 0.16 16 40 H 0.03 0.70 7.36 -51.93 -0.38 0.32 16 41 H 0.06 1.25 8.00 -51.93 -0.42 0.83 16 LS Contribution 307.49 15.07 4.63 4.63 Total: -1.00 -27.47 307.49 -7.79 -35.26 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -6.56 Total: 3.94 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -0.13 Total: -15.40 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: -0.26 Total: -35.97 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: -0.45 Total: -8.39 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.47 -7.79 -35.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688089827.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.046 kcal (2) G-P(sol) polarization free energy of solvation -27.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds