Wall clock time and date at job start Mon Mar 30 2020 04:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46881 * 2 1 4 4 H 1.08995 * 109.47115 * 303.20416 * 3 2 1 5 5 C 1.50705 * 109.46761 * 183.20718 * 3 2 1 6 6 H 1.07995 * 119.99617 * 239.99663 * 5 3 2 7 7 C 1.37870 * 120.00036 * 60.00203 * 5 3 2 8 8 N 1.31516 * 120.00505 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99796 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47175 * 269.99286 * 9 7 5 11 11 H 1.48492 * 109.47273 * 29.99436 * 9 7 5 12 12 H 1.48503 * 109.47223 * 149.99527 * 9 7 5 13 13 N 1.46898 * 109.47411 * 63.20492 * 3 2 1 14 14 C 1.46850 * 110.99751 * 66.79001 * 13 3 2 15 15 C 1.53040 * 109.52045 * 185.83701 * 14 13 3 16 16 H 1.08996 * 109.50392 * 60.76574 * 15 14 13 17 17 C 1.53002 * 109.50224 * 180.88038 * 15 14 13 18 18 C 1.53111 * 109.28005 * 300.82317 * 15 14 13 19 19 H 1.08998 * 109.52575 * 297.74694 * 18 15 14 20 20 O 1.42902 * 109.52172 * 177.56151 * 18 15 14 21 21 C 1.53115 * 109.16257 * 57.65526 * 18 15 14 22 22 H 1.08996 * 109.50346 * 62.32370 * 21 18 15 23 23 C 1.53005 * 109.50654 * 182.40429 * 21 18 15 24 24 C 1.46842 * 110.99979 * 190.99887 * 13 3 2 25 25 H 1.08995 * 109.47307 * 304.77852 * 1 2 3 26 26 H 1.08998 * 109.46742 * 64.78408 * 1 2 3 27 27 H 1.08996 * 109.47087 * 184.77998 * 1 2 3 28 28 H 1.08993 * 109.47509 * 239.99540 * 2 1 3 29 29 H 1.09005 * 109.46949 * 119.99514 * 2 1 3 30 30 H 0.96993 * 120.00411 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.46754 * 305.85599 * 14 13 3 32 32 H 1.09003 * 109.46100 * 65.83684 * 14 13 3 33 33 H 1.08999 * 109.46861 * 60.00116 * 17 15 14 34 34 H 1.09002 * 109.47151 * 180.02562 * 17 15 14 35 35 H 1.09002 * 109.47324 * 300.00584 * 17 15 14 36 36 H 0.96706 * 113.99731 * 180.02562 * 20 18 15 37 37 H 1.09002 * 109.47083 * 59.99705 * 23 21 18 38 38 H 1.08993 * 109.47547 * 179.97438 * 23 21 18 39 39 H 1.08997 * 109.46793 * 300.00205 * 23 21 18 40 40 H 1.08998 * 109.46843 * 294.17776 * 24 13 3 41 41 H 1.09001 * 109.46244 * 54.14985 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6305 1.9726 -0.8598 5 6 3.5449 1.4432 -0.0795 6 1 4.1271 1.8960 0.7094 7 6 4.1785 0.8660 -1.1594 8 7 3.4696 0.3143 -2.1200 9 14 6.0439 0.8675 -1.2582 10 1 6.5014 2.0931 -1.9611 11 1 6.6123 0.8423 0.1134 12 1 6.5010 -0.3315 -2.0057 13 7 1.6146 2.1124 1.2362 14 6 2.2763 1.5242 2.4079 15 6 1.7033 2.1449 3.6840 16 1 0.6351 1.9364 3.7423 17 6 2.4083 1.5478 4.9036 18 6 1.9276 3.6592 3.6544 19 1 2.9970 3.8688 3.6355 20 8 1.3443 4.2512 4.8170 21 6 1.2700 4.2403 2.3997 22 1 0.1949 4.0653 2.4380 23 6 1.5406 5.7447 2.3311 24 6 1.8556 3.5589 1.1607 25 1 -0.3633 0.5861 0.8440 26 1 -0.3633 0.4378 -0.9297 27 1 -0.3633 -1.0241 0.0856 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 3.9154 -0.0922 -2.8795 31 1 2.1055 0.4477 2.4193 32 1 3.3471 1.7216 2.3574 33 1 3.4762 1.7585 4.8452 34 1 1.9995 1.9899 5.8122 35 1 2.2513 0.4693 4.9222 36 1 1.4486 5.2115 4.8638 37 1 2.6158 5.9190 2.2914 38 1 1.0727 6.1577 1.4375 39 1 1.1264 6.2289 3.2154 40 1 2.9284 3.7466 1.1160 41 1 1.3792 3.9602 0.2662 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688089827.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:27 Heat of formation + Delta-G solvation = -87.124109 kcal Electronic energy + Delta-G solvation = -19061.284405 eV Core-core repulsion = 16360.399595 eV Total energy + Delta-G solvation = -2700.884811 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.72677 -38.01467 -35.50375 -34.42508 -33.73224 -32.18671 -28.60202 -27.41264 -27.13134 -25.36719 -23.56440 -21.82805 -20.89055 -20.75339 -18.43743 -18.21698 -16.93396 -16.27219 -16.08888 -15.76833 -15.30327 -14.78561 -14.48960 -14.34507 -13.77050 -13.59692 -13.45807 -13.36600 -13.17106 -13.09204 -12.82137 -12.69818 -12.51884 -12.41391 -12.24220 -11.95305 -11.69905 -11.61499 -11.53127 -11.33194 -10.97232 -10.91417 -10.58501 -10.42709 -8.91489 -8.03200 -6.25854 1.35237 1.37766 1.46017 2.38989 3.14697 3.27863 3.43723 3.75765 3.88738 4.12419 4.20289 4.47583 4.52191 4.55100 4.60894 4.74355 4.75258 4.77951 4.83281 4.88583 4.94023 5.00671 5.02550 5.08336 5.19607 5.25689 5.30512 5.38466 5.39328 5.43261 5.50900 5.53570 5.64671 5.80144 6.07557 6.20043 6.39917 6.68819 6.91446 6.95479 7.44957 8.91667 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022438 B = 0.008079 C = 0.007537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.569286 B = 3465.107639 C = 3714.297545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.105 4.105 3 C 0.220 3.780 4 H 0.003 0.997 5 C -0.550 4.550 6 H 0.049 0.951 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.944 3.056 10 H -0.278 1.278 11 H -0.272 1.272 12 H -0.283 1.283 13 N -0.534 5.534 14 C 0.077 3.923 15 C -0.079 4.079 16 H 0.072 0.928 17 C -0.134 4.134 18 C 0.124 3.876 19 H 0.045 0.955 20 O -0.570 6.570 21 C -0.112 4.112 22 H 0.075 0.925 23 C -0.144 4.144 24 C 0.072 3.928 25 H 0.057 0.943 26 H 0.032 0.968 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.030 0.970 30 H 0.261 0.739 31 H 0.064 0.936 32 H 0.017 0.983 33 H 0.048 0.952 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.388 0.612 37 H 0.053 0.947 38 H 0.060 0.940 39 H 0.081 0.919 40 H 0.015 0.985 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.250 6.907 10.673 13.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.143 4.143 3 C 0.113 3.887 4 H 0.021 0.979 5 C -0.589 4.589 6 H 0.068 0.932 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.770 3.230 10 H -0.204 1.204 11 H -0.197 1.197 12 H -0.208 1.208 13 N -0.257 5.257 14 C -0.051 4.051 15 C -0.098 4.098 16 H 0.090 0.910 17 C -0.192 4.192 18 C 0.065 3.935 19 H 0.063 0.937 20 O -0.378 6.378 21 C -0.131 4.131 22 H 0.093 0.907 23 C -0.202 4.202 24 C -0.056 4.056 25 H 0.076 0.924 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.036 0.964 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.237 0.763 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.033 0.967 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.895 6.120 10.664 12.898 hybrid contribution 2.182 0.435 -1.009 2.443 sum -1.713 6.555 9.655 11.795 Atomic orbital electron populations 1.21580 0.96335 0.99962 1.00574 1.21431 0.94450 0.98183 1.00268 1.19028 0.91624 0.91509 0.86527 0.97910 1.21959 0.93965 1.37159 1.05819 0.93245 1.25594 1.01774 0.94972 0.95454 1.69996 1.36337 1.38475 1.10149 0.85780 0.81632 0.77542 0.78033 1.20420 1.19717 1.20820 1.62338 1.57072 1.02704 1.03542 1.21872 0.95321 0.98644 0.89297 1.21137 1.00899 0.93218 0.94521 0.90963 1.21661 0.99765 1.00649 0.97094 1.21698 0.94885 0.92766 0.84124 0.93736 1.86459 1.81291 1.26759 1.43285 1.21808 1.00917 0.96217 0.94188 0.90654 1.21788 1.01826 0.93419 1.03136 1.21873 0.97438 0.88871 0.97460 0.92395 0.94880 0.93537 0.91974 0.95083 0.92938 0.91800 0.96438 0.93276 0.91380 0.92316 0.76260 0.92779 0.92053 0.90024 0.96687 0.92660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 9.85 71.98 0.71 -4.44 16 2 C -0.10 -5.03 5.14 30.60 0.16 -4.87 16 3 C 0.22 10.99 1.72 44.17 0.08 11.06 16 4 H 0.00 0.17 7.97 -2.39 -0.02 0.15 16 5 C -0.55 -29.59 7.24 25.60 0.19 -29.41 16 6 H 0.05 2.68 5.84 -2.91 -0.02 2.66 16 7 C 0.02 1.20 5.30 84.65 0.45 1.65 16 8 N -0.91 -51.86 11.30 21.45 0.24 -51.62 16 9 Si 0.94 43.44 29.54 68.60 2.03 45.47 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 13 N -0.53 -22.38 3.89 -875.50 -3.41 -25.79 16 14 C 0.08 3.01 4.06 86.33 0.35 3.36 16 15 C -0.08 -2.50 2.61 -10.74 -0.03 -2.53 16 16 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 17 C -0.13 -3.69 9.07 71.98 0.65 -3.03 16 18 C 0.12 3.55 2.42 30.67 0.07 3.62 16 19 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 20 O -0.57 -13.95 12.74 -148.98 -1.90 -15.85 16 21 C -0.11 -3.25 2.61 -10.74 -0.03 -3.28 16 22 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 23 C -0.14 -3.15 8.94 71.98 0.64 -2.51 16 24 C 0.07 2.75 4.48 86.33 0.39 3.13 16 25 H 0.06 2.25 7.56 -2.39 -0.02 2.23 16 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.06 3.36 5.99 -2.39 -0.01 3.35 16 29 H 0.03 1.46 6.33 -2.38 -0.02 1.44 16 30 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 31 H 0.06 2.60 6.20 -2.39 -0.01 2.59 16 32 H 0.02 0.75 6.33 -2.39 -0.02 0.74 16 33 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.07 1.74 7.76 -2.39 -0.02 1.72 16 35 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.39 6.22 7.48 -74.05 -0.55 5.67 16 37 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.08 1.31 6.84 -2.39 -0.02 1.29 16 40 H 0.01 0.62 7.36 -2.39 -0.02 0.60 16 41 H 0.05 2.17 8.00 -2.39 -0.02 2.15 16 Total: -1.00 -59.37 307.49 1.03 -58.35 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.44 Total: 16.68 kcal Atomic # 6 Polarization: -30.88 SS G_CDS: 3.63 Total: -27.25 kcal Atomic # 7 Polarization: -74.24 SS G_CDS: -3.16 Total: -77.40 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -1.90 Total: -15.85 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -59.37 1.03 -58.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688089827.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.777 kcal (2) G-P(sol) polarization free energy of solvation -59.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds