Wall clock time and date at job start Mon Mar 30 2020 04:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.46775 * 2 1 4 4 H 1.08997 * 109.47353 * 307.66242 * 3 2 1 5 5 C 1.50701 * 109.46662 * 187.66727 * 3 2 1 6 6 H 1.08004 * 119.99502 * 243.09429 * 5 3 2 7 7 C 1.37876 * 120.00334 * 63.09858 * 5 3 2 8 8 N 1.31513 * 120.00014 * 200.57039 * 7 5 3 9 9 Si 1.86797 * 119.99926 * 20.57043 * 7 5 3 10 10 H 1.48500 * 109.47085 * 94.69419 * 9 7 5 11 11 H 1.48502 * 109.47176 * 214.69260 * 9 7 5 12 12 H 1.48498 * 109.47126 * 334.69380 * 9 7 5 13 13 N 1.46897 * 109.46829 * 67.66674 * 3 2 1 14 14 C 1.46895 * 111.00202 * 46.21813 * 13 3 2 15 15 C 1.46894 * 110.99982 * 282.26047 * 13 3 2 16 16 C 1.52995 * 109.47407 * 214.97237 * 15 13 3 17 17 H 1.09000 * 110.54147 * 52.43250 * 16 15 13 18 18 C 1.54891 * 110.48569 * 289.82523 * 16 15 13 19 19 C 1.54890 * 102.74733 * 203.37823 * 18 16 15 20 20 C 1.54268 * 104.19690 * 37.93967 * 19 18 16 21 21 C 1.53873 * 106.59830 * 336.39071 * 20 19 18 22 22 H 1.08997 * 110.03323 * 240.71273 * 21 20 19 23 23 O 1.42905 * 110.07039 * 119.30737 * 21 20 19 24 24 H 1.09002 * 109.46939 * 171.37475 * 1 2 3 25 25 H 1.09003 * 109.47472 * 291.37645 * 1 2 3 26 26 H 1.08999 * 109.47427 * 51.37958 * 1 2 3 27 27 H 1.09006 * 109.46922 * 240.00657 * 2 1 3 28 28 H 1.08995 * 109.47869 * 119.99790 * 2 1 3 29 29 H 0.96997 * 120.00070 * 179.97438 * 8 7 5 30 30 H 1.08993 * 109.47413 * 286.67659 * 14 13 3 31 31 H 1.09002 * 109.47011 * 46.67772 * 14 13 3 32 32 H 1.09000 * 109.46927 * 166.67322 * 14 13 3 33 33 H 1.09005 * 109.47085 * 94.97215 * 15 13 3 34 34 H 1.09007 * 109.47242 * 334.97432 * 15 13 3 35 35 H 1.08997 * 110.75604 * 321.68760 * 18 16 15 36 36 H 1.08993 * 110.75999 * 85.06357 * 18 16 15 37 37 H 1.09006 * 110.48823 * 156.61868 * 19 18 16 38 38 H 1.09003 * 110.48622 * 279.13188 * 19 18 16 39 39 H 1.08995 * 110.03424 * 217.10222 * 20 19 18 40 40 H 1.09004 * 110.02530 * 95.67486 * 20 19 18 41 41 H 0.96699 * 114.00336 * 62.11906 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5690 1.9945 -0.8135 5 6 3.5349 1.4468 -0.1896 6 1 4.1767 1.8341 0.5880 7 6 4.0834 0.9564 -1.3556 8 7 5.3434 0.5804 -1.3823 9 14 3.0369 0.8260 -2.8974 10 1 3.2273 2.0415 -3.7291 11 1 3.4449 -0.3731 -3.6727 12 1 1.6067 0.7060 -2.5162 13 7 1.7068 2.0796 1.2811 14 6 2.0395 1.1993 2.4090 15 6 0.2925 2.4744 1.3207 16 6 0.1485 3.7768 2.1106 17 1 0.8266 4.5366 1.7223 18 6 0.4159 3.5300 3.6162 19 6 -0.3360 4.7026 4.2935 20 6 -1.6174 4.8676 3.4506 21 6 -1.3094 4.2789 2.0627 22 1 -1.4140 5.0493 1.2987 23 8 -2.1930 3.1909 1.7843 24 1 -0.3633 -1.0161 -0.1541 25 1 -0.3634 0.3746 0.9570 26 1 -0.3634 0.6414 -0.8029 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 5.7291 0.2350 -2.2025 30 1 1.3169 0.3849 2.4597 31 1 3.0395 0.7894 2.2673 32 1 2.0091 1.7704 3.3369 33 1 -0.2903 1.6901 1.8039 34 1 -0.0717 2.6238 0.3042 35 1 0.0011 2.5723 3.9303 36 1 1.4831 3.5794 3.8321 37 1 -0.5870 4.4504 5.3239 38 1 0.2649 5.6114 4.2597 39 1 -1.8716 5.9236 3.3602 40 1 -2.4409 4.3231 3.9127 41 1 -3.1266 3.4408 1.7516 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000689258596.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:39 Heat of formation + Delta-G solvation = -49.966717 kcal Electronic energy + Delta-G solvation = -18862.430726 eV Core-core repulsion = 16163.157181 eV Total energy + Delta-G solvation = -2699.273545 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.20840 -37.36090 -34.78465 -32.64264 -31.34738 -29.62062 -27.74869 -27.35274 -25.69049 -23.03631 -21.64293 -20.64036 -19.50705 -19.08601 -17.26692 -16.52261 -15.82779 -14.96490 -14.67964 -14.38014 -13.92962 -13.90686 -13.31150 -12.97463 -12.62921 -12.42207 -12.06120 -11.91835 -11.64357 -11.22919 -11.20018 -11.01496 -10.89796 -10.78230 -10.63826 -10.49436 -10.39879 -10.08156 -9.87301 -9.81239 -9.61393 -9.44760 -9.16034 -8.22608 -7.10764 -6.04682 -3.92386 3.33181 3.42795 3.46931 4.34502 4.49567 4.60232 4.68842 4.93321 5.14666 5.24056 5.40688 5.49659 5.69490 5.70985 5.78700 5.80752 5.91138 5.98358 6.01018 6.12500 6.13988 6.21998 6.26064 6.33262 6.40095 6.44676 6.56941 6.66276 6.70985 6.80951 6.87930 6.96293 7.08833 7.37512 7.73620 7.77614 8.12474 8.28702 8.77542 9.12112 9.65055 11.08471 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.032806 B = 0.006826 C = 0.006421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.293288 B = 4100.928448 C = 4359.372454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.153 4.153 3 C 0.192 3.808 4 H 0.030 0.970 5 C -0.505 4.505 6 H 0.079 0.921 7 C 0.076 3.924 8 N -0.890 5.890 9 Si 0.857 3.143 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.257 1.257 13 N -0.526 5.526 14 C 0.031 3.969 15 C 0.070 3.930 16 C -0.078 4.078 17 H 0.089 0.911 18 C -0.113 4.113 19 C -0.124 4.124 20 C -0.155 4.155 21 C 0.101 3.899 22 H 0.053 0.947 23 O -0.558 6.558 24 H 0.035 0.965 25 H 0.059 0.941 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.262 0.738 30 H 0.014 0.986 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.477 6.085 8.335 17.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.192 4.192 3 C 0.084 3.916 4 H 0.048 0.952 5 C -0.543 4.543 6 H 0.097 0.903 7 C -0.126 4.126 8 N -0.527 5.527 9 Si 0.684 3.316 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.181 1.181 13 N -0.248 5.248 14 C -0.118 4.118 15 C -0.058 4.058 16 C -0.097 4.097 17 H 0.107 0.893 18 C -0.150 4.150 19 C -0.162 4.162 20 C -0.193 4.193 21 C 0.042 3.958 22 H 0.071 0.929 23 O -0.363 6.363 24 H 0.054 0.946 25 H 0.077 0.923 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.032 0.968 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -13.463 6.103 8.244 16.925 hybrid contribution -1.495 -0.472 -1.069 1.897 sum -14.958 5.631 7.175 17.519 Atomic orbital electron populations 1.22212 0.98370 0.99883 1.01487 1.22571 0.93036 1.02040 1.01589 1.19780 0.96818 0.88189 0.86802 0.95173 1.20889 0.89371 1.40696 1.03344 0.90337 1.24840 0.94724 0.94324 0.98716 1.70029 1.14042 1.41293 1.27382 0.87224 0.82442 0.77542 0.84412 1.20765 1.21548 1.18136 1.62045 1.16712 1.42297 1.03759 1.22431 1.01272 0.94485 0.93576 1.22113 0.89788 0.94892 0.99053 1.22119 0.92235 0.99365 0.96006 0.89300 1.22596 1.00316 0.97483 0.94613 1.22335 0.96058 0.99302 0.98514 1.22913 0.98963 1.00642 0.96799 1.22555 0.91073 0.88006 0.94212 0.92918 1.86632 1.19467 1.35936 1.94233 0.94592 0.92263 0.93639 0.92806 0.92261 0.92854 0.96801 0.90745 0.93150 0.93462 0.92221 0.91780 0.90800 0.92105 0.91712 0.91906 0.91284 0.78599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 8.60 37.15 0.32 -2.79 16 2 C -0.15 -3.42 4.26 -26.73 -0.11 -3.54 16 3 C 0.19 4.60 1.43 -68.86 -0.10 4.50 16 4 H 0.03 0.76 6.02 -51.93 -0.31 0.45 16 5 C -0.51 -14.24 8.36 -34.44 -0.29 -14.52 16 6 H 0.08 2.42 7.87 -52.48 -0.41 2.01 16 7 C 0.08 2.20 5.23 -17.82 -0.09 2.10 16 8 N -0.89 -27.18 13.96 55.43 0.77 -26.41 16 9 Si 0.86 21.53 25.85 -169.99 -4.39 17.14 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.26 -6.17 5.80 56.52 0.33 -5.84 16 13 N -0.53 -11.00 4.48 -236.29 -1.06 -12.06 16 14 C 0.03 0.60 7.84 60.06 0.47 1.07 16 15 C 0.07 1.25 2.26 -3.83 -0.01 1.25 16 16 C -0.08 -1.17 3.07 -88.96 -0.27 -1.45 16 17 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 18 C -0.11 -1.53 4.66 -24.74 -0.12 -1.64 16 19 C -0.12 -1.36 6.83 -25.07 -0.17 -1.53 16 20 C -0.16 -1.58 6.61 -25.61 -0.17 -1.75 16 21 C 0.10 1.24 4.12 -25.61 -0.11 1.13 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 O -0.56 -6.97 11.74 -35.23 -0.41 -7.39 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 1.08 4.51 -51.93 -0.23 0.85 16 26 H 0.04 0.87 7.87 -51.93 -0.41 0.46 16 27 H 0.05 1.28 5.37 -51.93 -0.28 1.00 16 28 H 0.06 1.32 6.08 -51.93 -0.32 1.00 16 29 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.01 0.26 6.08 -51.93 -0.32 -0.06 16 31 H 0.07 1.61 7.10 -51.93 -0.37 1.24 16 32 H 0.05 0.86 5.59 -51.93 -0.29 0.57 16 33 H 0.05 0.86 4.82 -51.93 -0.25 0.61 16 34 H 0.06 1.15 6.84 -51.93 -0.35 0.79 16 35 H 0.06 0.91 7.87 -51.93 -0.41 0.50 16 36 H 0.07 1.05 7.18 -51.93 -0.37 0.68 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.66 7.96 -51.93 -0.41 0.25 16 41 H 0.37 2.91 9.11 45.56 0.41 3.33 16 LS Contribution 296.74 15.07 4.47 4.47 Total: -1.00 -30.63 296.74 -7.34 -37.97 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.07 Total: 3.45 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -0.65 Total: -17.18 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: -0.29 Total: -38.47 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -0.41 Total: -7.39 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.39 Total: 17.14 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.63 -7.34 -37.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689258596.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.000 kcal (2) G-P(sol) polarization free energy of solvation -30.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds