Wall clock time and date at job start Mon Mar 30 2020 05:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46848 * 2 1 4 4 C 1.52999 * 109.47219 * 239.99784 * 2 1 3 5 5 C 1.50702 * 109.46806 * 175.00039 * 4 2 1 6 6 H 1.07998 * 120.00327 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99766 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99948 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00079 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47476 * 89.99869 * 9 7 5 11 11 H 1.48497 * 109.47054 * 210.00138 * 9 7 5 12 12 H 1.48504 * 109.46933 * 329.99643 * 9 7 5 13 13 N 1.46899 * 109.47001 * 119.99509 * 2 1 3 14 14 C 1.46850 * 111.00204 * 59.21136 * 13 2 1 15 15 C 1.53033 * 109.52252 * 174.15980 * 14 13 2 16 16 H 1.08997 * 109.53834 * 299.21872 * 15 14 13 17 17 C 1.53005 * 109.49984 * 179.12196 * 15 14 13 18 18 O 1.42900 * 109.47115 * 175.19515 * 17 15 14 19 19 C 1.53111 * 109.28170 * 59.18180 * 15 14 13 20 20 C 1.53119 * 109.15908 * 302.34373 * 19 15 14 21 21 C 1.46848 * 111.00185 * 295.00068 * 13 2 1 22 22 H 1.09002 * 109.46161 * 65.82497 * 21 13 2 23 23 C 1.52997 * 109.45343 * 305.85119 * 21 13 2 24 24 H 1.09002 * 109.47276 * 300.00577 * 1 2 3 25 25 H 1.09003 * 109.47031 * 60.00512 * 1 2 3 26 26 H 1.08994 * 109.46982 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46736 * 294.99490 * 4 2 1 28 28 H 1.08991 * 109.47138 * 54.99922 * 4 2 1 29 29 H 0.96999 * 119.99970 * 180.02562 * 8 7 5 30 30 H 1.09004 * 109.45897 * 54.14553 * 14 13 2 31 31 H 1.08992 * 109.44929 * 294.17294 * 14 13 2 32 32 H 1.09001 * 109.47024 * 295.19611 * 17 15 14 33 33 H 1.09002 * 109.47172 * 55.20080 * 17 15 14 34 34 H 0.96696 * 114.00544 * 179.97438 * 18 17 15 35 35 H 1.08999 * 109.52910 * 182.43879 * 19 15 14 36 36 H 1.08998 * 109.52382 * 62.24686 * 19 15 14 37 37 H 1.08997 * 109.50505 * 297.70825 * 20 19 15 38 38 H 1.08997 * 109.53809 * 177.61464 * 20 19 15 39 39 H 1.09002 * 109.47524 * 299.97199 * 23 21 13 40 40 H 1.09001 * 109.47461 * 59.96943 * 23 21 13 41 41 H 1.09003 * 109.47595 * 179.97438 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 1 4.0789 -0.0854 -0.5395 7 6 4.2305 -1.1936 -2.3576 8 7 3.5766 -1.8379 -3.2993 9 14 6.0922 -1.0624 -2.4359 10 1 6.7001 -2.2150 -1.7237 11 1 6.5298 -1.0706 -3.8549 12 1 6.5268 0.2029 -1.7913 13 7 2.0196 -0.6924 1.1995 14 6 1.5334 -2.0774 1.2430 15 6 2.1776 -2.8087 2.4229 16 1 3.2603 -2.8207 2.2971 17 6 1.6541 -4.2452 2.4809 18 8 2.3378 -4.9601 3.5121 19 6 1.8222 -2.0822 3.7230 20 6 2.2964 -0.6291 3.6326 21 6 1.6488 0.0391 2.4176 22 1 0.5648 0.0282 2.5320 23 6 2.1357 1.4856 2.3115 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 0.0005 27 1 1.7517 -1.7715 -1.2054 28 1 1.6054 -0.2619 -2.1369 29 1 4.0610 -2.2453 -4.0343 30 1 1.7964 -2.5839 0.3144 31 1 0.4501 -2.0781 1.3630 32 1 0.5852 -4.2340 2.6939 33 1 1.8286 -4.7345 1.5226 34 1 2.0558 -5.8802 3.6064 35 1 2.3144 -2.5745 4.5618 36 1 0.7423 -2.1045 3.8692 37 1 3.3809 -0.6062 3.5255 38 1 2.0089 -0.0948 4.5380 39 1 3.2196 1.4967 2.1972 40 1 1.6742 1.9618 1.4464 41 1 1.8602 2.0290 3.2154 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695847794.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:26 Heat of formation + Delta-G solvation = -64.815238 kcal Electronic energy + Delta-G solvation = -18858.981574 eV Core-core repulsion = 16159.064149 eV Total energy + Delta-G solvation = -2699.917425 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.42561 -36.84935 -34.59999 -32.78804 -32.12881 -29.46295 -27.88319 -27.27948 -24.28305 -23.58718 -22.92348 -20.60823 -19.69080 -18.42078 -17.14760 -16.11607 -15.53369 -14.94025 -14.76059 -14.36037 -13.93614 -13.76934 -13.55090 -13.02686 -12.46788 -12.32734 -12.15519 -11.85213 -11.64791 -11.54254 -11.41559 -11.09568 -11.00461 -10.72914 -10.50031 -10.39641 -10.25657 -10.21694 -9.97219 -9.68503 -9.52008 -9.08231 -8.92378 -8.22767 -7.38424 -5.86790 -3.84154 3.41456 3.47224 3.51560 4.22305 4.58724 4.72314 5.05597 5.16091 5.18720 5.43997 5.50468 5.59936 5.65180 5.67964 5.83270 5.85757 5.90118 5.91965 6.00400 6.03514 6.07791 6.12899 6.26554 6.31087 6.41096 6.49229 6.54465 6.60802 6.67646 6.79194 6.84620 7.05274 7.58934 7.71783 7.75079 7.99563 8.08687 8.16275 8.61040 9.22162 9.77616 11.25142 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.018128 B = 0.008433 C = 0.007148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.229998 B = 3319.630774 C = 3916.071166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.083 3.917 3 H 0.077 0.923 4 C 0.028 3.972 5 C -0.488 4.488 6 H 0.061 0.939 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.275 1.275 13 N -0.504 5.504 14 C 0.064 3.936 15 C -0.084 4.084 16 H 0.087 0.913 17 C 0.081 3.919 18 O -0.573 6.573 19 C -0.107 4.107 20 C -0.110 4.110 21 C 0.077 3.923 22 H 0.030 0.970 23 C -0.146 4.146 24 H 0.040 0.960 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.019 0.981 28 H 0.017 0.983 29 H 0.257 0.743 30 H 0.092 0.908 31 H 0.022 0.978 32 H 0.039 0.961 33 H 0.049 0.951 34 H 0.373 0.627 35 H 0.063 0.937 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.260 -0.872 12.432 13.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.025 4.025 3 H 0.095 0.905 4 C -0.009 4.009 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.200 1.200 13 N -0.228 5.228 14 C -0.064 4.064 15 C -0.103 4.103 16 H 0.105 0.895 17 C 0.003 3.997 18 O -0.378 6.378 19 C -0.145 4.145 20 C -0.148 4.148 21 C -0.031 4.031 22 H 0.048 0.952 23 C -0.203 4.203 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.040 0.960 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.219 0.781 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.410 -0.374 12.313 13.454 hybrid contribution -0.222 -0.575 -0.242 0.662 sum -5.632 -0.949 12.071 13.353 Atomic orbital electron populations 1.22524 1.00068 1.01160 1.00618 1.21988 0.89855 0.98975 0.91661 0.90508 1.19239 0.96411 0.95287 0.89948 1.21180 0.91764 1.32820 1.06890 0.92085 1.25001 0.97941 0.95950 0.95999 1.69964 1.35141 1.37048 1.12408 0.86644 0.86542 0.78383 0.76689 1.20926 1.21687 1.20025 1.61978 1.59271 1.00709 1.00795 1.21990 0.95341 0.90420 0.98615 1.21158 1.02418 0.91567 0.95167 0.89471 1.22211 0.94500 0.93006 0.89948 1.86481 1.66443 1.27608 1.57227 1.21527 0.99917 0.95473 0.97569 1.21620 1.01519 0.95157 0.96528 1.21593 0.96439 0.93829 0.91260 0.95181 1.21891 1.02533 0.95106 1.00775 0.94088 0.92651 0.93104 0.96312 0.96433 0.93388 0.88970 0.96016 0.94229 0.93303 0.78082 0.91801 0.93162 0.91123 0.92470 0.91687 0.92296 0.93313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.21 8.50 37.16 0.32 -2.89 16 2 C 0.08 1.68 1.90 -67.71 -0.13 1.55 16 3 H 0.08 1.59 5.92 -51.93 -0.31 1.28 16 4 C 0.03 0.71 4.27 -27.88 -0.12 0.59 16 5 C -0.49 -13.63 8.84 -34.44 -0.30 -13.93 16 6 H 0.06 1.72 7.74 -52.49 -0.41 1.31 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 9 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.50 -9.57 4.19 -218.76 -0.92 -10.48 16 14 C 0.06 1.16 3.92 -3.83 -0.02 1.14 16 15 C -0.08 -1.36 2.59 -90.54 -0.23 -1.60 16 16 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 17 C 0.08 1.13 6.43 37.16 0.24 1.36 16 18 O -0.57 -7.59 13.25 -35.23 -0.47 -8.06 16 19 C -0.11 -1.55 5.15 -26.61 -0.14 -1.68 16 20 C -0.11 -1.60 5.37 -26.65 -0.14 -1.75 16 21 C 0.08 1.23 2.00 -67.72 -0.14 1.10 16 22 H 0.03 0.48 6.73 -51.93 -0.35 0.13 16 23 C -0.15 -2.17 8.78 37.16 0.33 -1.84 16 24 H 0.04 0.64 6.65 -51.93 -0.35 0.29 16 25 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.05 0.88 6.52 -51.93 -0.34 0.54 16 27 H 0.02 0.50 6.05 -51.93 -0.31 0.18 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.09 1.92 5.93 -51.93 -0.31 1.61 16 31 H 0.02 0.37 6.62 -51.93 -0.34 0.02 16 32 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.37 3.09 9.12 45.56 0.42 3.50 16 35 H 0.06 0.91 7.90 -51.93 -0.41 0.50 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.90 6.21 -51.93 -0.32 0.58 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 309.93 15.07 4.67 4.67 Total: -1.00 -30.66 309.93 -7.82 -38.48 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -6.39 Total: 1.24 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -0.43 Total: -16.60 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: -0.18 Total: -36.95 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.47 Total: -8.06 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.66 -7.82 -38.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695847794.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.335 kcal (2) G-P(sol) polarization free energy of solvation -30.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds