Wall clock time and date at job start Mon Mar 30 2020 05:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47123 * 2 1 4 4 C 1.52999 * 109.47201 * 239.99751 * 2 1 3 5 5 C 1.50699 * 109.47234 * 170.60892 * 4 2 1 6 6 H 1.08006 * 119.99842 * 354.09169 * 5 4 2 7 7 C 1.37877 * 120.00124 * 174.09287 * 5 4 2 8 8 N 1.31507 * 120.00227 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00033 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47235 * 60.00000 * 9 7 5 11 11 H 1.48501 * 109.47082 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47340 * 300.00032 * 9 7 5 13 13 N 1.46908 * 109.46977 * 119.99467 * 2 1 3 14 14 C 1.46843 * 110.99802 * 73.89323 * 13 2 1 15 15 C 1.53033 * 109.52209 * 185.83807 * 14 13 2 16 16 H 1.08994 * 109.50287 * 60.80377 * 15 14 13 17 17 C 1.53008 * 109.50341 * 180.87732 * 15 14 13 18 18 O 1.42893 * 109.47280 * 185.00105 * 17 15 14 19 19 C 1.53115 * 109.27928 * 300.81910 * 15 14 13 20 20 C 1.53123 * 109.16186 * 57.65560 * 19 15 14 21 21 C 1.46847 * 110.99867 * 198.10097 * 13 2 1 22 22 H 1.09000 * 109.46128 * 294.18119 * 21 13 2 23 23 C 1.53004 * 109.46410 * 54.15600 * 21 13 2 24 24 H 1.08995 * 109.47123 * 298.42200 * 1 2 3 25 25 H 1.09002 * 109.46836 * 58.41923 * 1 2 3 26 26 H 1.08994 * 109.46931 * 178.41734 * 1 2 3 27 27 H 1.09000 * 109.46932 * 290.60245 * 4 2 1 28 28 H 1.08990 * 109.47284 * 50.61021 * 4 2 1 29 29 H 0.96995 * 120.00442 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.46643 * 65.82224 * 14 13 2 31 31 H 1.09005 * 109.46189 * 305.85566 * 14 13 2 32 32 H 1.09002 * 109.46698 * 65.00158 * 17 15 14 33 33 H 1.09004 * 109.47142 * 305.00232 * 17 15 14 34 34 H 0.96694 * 114.00240 * 180.02562 * 18 17 15 35 35 H 1.09007 * 109.52151 * 177.55915 * 19 15 14 36 36 H 1.09001 * 109.52577 * 297.74546 * 19 15 14 37 37 H 1.08991 * 109.50558 * 182.40374 * 20 19 15 38 38 H 1.09002 * 109.53018 * 62.30170 * 20 19 15 39 39 H 1.09001 * 109.46701 * 51.98873 * 23 21 13 40 40 H 1.08994 * 109.46831 * 171.98304 * 23 21 13 41 41 H 1.08997 * 109.46832 * 291.98669 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5290 -0.5237 -1.3706 6 1 4.0439 0.1351 -0.6869 7 6 4.2341 -1.1839 -2.3545 8 7 3.6072 -1.9857 -3.1873 9 14 6.0798 -0.9384 -2.5054 10 1 6.7403 -1.3624 -1.2448 11 1 6.5970 -1.7542 -3.6333 12 1 6.3694 0.4961 -2.7578 13 7 2.0196 -0.6924 1.1996 14 6 1.8364 -2.1445 1.0806 15 6 2.2207 -2.8183 2.3998 16 1 1.5780 -2.4479 3.1983 17 6 2.0505 -4.3331 2.2683 18 8 2.2969 -4.9517 3.5326 19 6 3.6812 -2.4943 2.7262 20 6 3.8553 -0.9747 2.7968 21 6 3.4236 -0.3544 1.4660 22 1 4.0497 -0.7444 0.6634 23 6 3.5769 1.1662 1.5391 24 1 -0.3633 0.4891 0.9038 25 1 -0.3633 0.5382 -0.8755 26 1 -0.3633 -1.0272 -0.0284 27 1 1.8202 -1.7859 -1.1692 28 1 1.5463 -0.3135 -2.1312 29 1 4.1032 -2.4499 -3.8796 30 1 2.4699 -2.5262 0.2798 31 1 0.7928 -2.3614 0.8524 32 1 2.7581 -4.7157 1.5326 33 1 1.0339 -4.5579 1.9458 34 1 2.2070 -5.9144 3.5237 35 1 3.9464 -2.9364 3.6867 36 1 4.3271 -2.8993 1.9471 37 1 4.9019 -0.7367 2.9867 38 1 3.2391 -0.5743 3.6018 39 1 2.8486 1.5714 2.2415 40 1 4.5834 1.4140 1.8760 41 1 3.4080 1.5962 0.5519 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695847828.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:41 Heat of formation + Delta-G solvation = -81.331978 kcal Electronic energy + Delta-G solvation = -19189.017754 eV Core-core repulsion = 16488.384109 eV Total energy + Delta-G solvation = -2700.633645 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.80350 -38.01666 -35.98823 -34.42518 -33.78567 -30.95612 -29.45335 -28.91542 -25.63406 -25.00958 -24.51086 -21.94316 -20.98844 -19.99443 -18.45187 -18.20668 -16.79800 -16.63998 -16.06626 -15.93563 -15.18620 -15.07235 -14.69443 -14.61584 -13.95163 -13.81263 -13.54665 -13.29371 -13.17514 -12.87197 -12.75702 -12.54092 -12.46333 -12.41677 -12.25204 -12.05889 -11.56262 -11.47115 -11.38351 -11.13254 -10.90629 -10.83371 -10.72789 -10.49024 -8.80406 -8.16519 -6.20862 1.36479 1.36922 1.43878 2.39279 3.02604 3.18828 3.58953 3.86301 3.99710 4.08214 4.29742 4.39974 4.46490 4.57394 4.62234 4.67462 4.71853 4.77372 4.79482 4.86364 4.90556 5.05425 5.07438 5.11379 5.18210 5.18982 5.27989 5.31958 5.37700 5.39406 5.46486 5.58444 5.68877 5.75208 5.86546 6.27568 6.49867 6.54316 6.91980 6.92488 7.43633 8.94848 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.018315 B = 0.009291 C = 0.008493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.404780 B = 3013.048742 C = 3296.062599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.077 3.923 3 H 0.074 0.926 4 C 0.000 4.000 5 C -0.521 4.521 6 H 0.078 0.922 7 C 0.004 3.996 8 N -0.932 5.932 9 Si 0.942 3.058 10 H -0.268 1.268 11 H -0.289 1.289 12 H -0.268 1.268 13 N -0.508 5.508 14 C 0.068 3.932 15 C -0.075 4.075 16 H 0.080 0.920 17 C 0.086 3.914 18 O -0.583 6.583 19 C -0.105 4.105 20 C -0.104 4.104 21 C 0.055 3.945 22 H 0.052 0.948 23 C -0.137 4.137 24 H 0.068 0.932 25 H 0.052 0.948 26 H 0.044 0.956 27 H 0.006 0.994 28 H -0.018 1.018 29 H 0.258 0.742 30 H 0.018 0.982 31 H 0.066 0.934 32 H 0.037 0.963 33 H 0.056 0.944 34 H 0.395 0.605 35 H 0.072 0.928 36 H 0.037 0.963 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.148 -1.108 11.951 12.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.032 4.032 3 H 0.092 0.908 4 C -0.038 4.038 5 C -0.559 4.559 6 H 0.096 0.904 7 C -0.193 4.193 8 N -0.573 5.573 9 Si 0.767 3.233 10 H -0.193 1.193 11 H -0.215 1.215 12 H -0.193 1.193 13 N -0.232 5.232 14 C -0.061 4.061 15 C -0.094 4.094 16 H 0.098 0.902 17 C 0.008 3.992 18 O -0.391 6.391 19 C -0.142 4.142 20 C -0.141 4.141 21 C -0.053 4.053 22 H 0.070 0.930 23 C -0.195 4.195 24 H 0.087 0.913 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.024 0.976 28 H 0.000 1.000 29 H 0.067 0.933 30 H 0.036 0.964 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.245 0.755 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.296 -0.427 12.383 12.602 hybrid contribution 1.290 -1.043 -1.827 2.467 sum -1.006 -1.470 10.557 10.706 Atomic orbital electron populations 1.21720 0.94480 1.01100 1.01389 1.21790 0.94898 0.97934 0.88539 0.90793 1.19703 0.95266 0.95579 0.93297 1.21832 0.94124 1.25884 1.14044 0.90421 1.25784 1.02270 0.95439 0.95805 1.70085 1.37315 1.30672 1.19239 0.85846 0.81227 0.78428 0.77752 1.19302 1.21490 1.19323 1.62404 1.18841 1.06554 1.35373 1.21855 0.99885 0.89034 0.95299 1.21058 0.97590 0.93270 0.97511 0.90191 1.22054 0.99402 0.92783 0.84960 1.86399 1.94028 1.26374 1.32307 1.21479 0.95472 0.96360 1.00932 1.21598 1.00887 0.94758 0.96899 1.22030 0.89802 0.96208 0.97266 0.92985 1.21821 1.01729 0.94598 1.01304 0.91349 0.92852 0.93738 0.97594 0.99998 0.93301 0.96373 0.91587 0.94481 0.92628 0.75538 0.90955 0.94373 0.91268 0.91015 0.91557 0.91728 0.93595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.43 9.23 71.98 0.66 -3.77 16 2 C 0.08 3.11 2.33 44.91 0.10 3.21 16 3 H 0.07 3.01 5.46 -2.38 -0.01 3.00 16 4 C 0.00 -0.02 3.98 29.85 0.12 0.10 16 5 C -0.52 -28.03 7.02 25.60 0.18 -27.85 16 6 H 0.08 3.97 4.24 -2.91 -0.01 3.96 16 7 C 0.00 0.25 5.46 84.66 0.46 0.71 16 8 N -0.93 -56.02 13.29 21.45 0.28 -55.73 16 9 Si 0.94 43.95 29.54 68.60 2.03 45.97 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 13 N -0.51 -19.05 4.38 -846.01 -3.71 -22.76 16 14 C 0.07 2.55 3.59 86.33 0.31 2.86 16 15 C -0.08 -2.39 2.59 -10.74 -0.03 -2.42 16 16 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 17 C 0.09 2.39 6.43 71.98 0.46 2.85 16 18 O -0.58 -14.37 13.25 -148.98 -1.97 -16.35 16 19 C -0.10 -3.35 5.16 30.67 0.16 -3.19 16 20 C -0.10 -3.23 5.37 30.65 0.16 -3.07 16 21 C 0.06 2.04 1.76 44.94 0.08 2.11 16 22 H 0.05 2.36 4.84 -2.39 -0.01 2.35 16 23 C -0.14 -4.49 8.10 71.98 0.58 -3.90 16 24 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 25 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16 26 H 0.04 1.52 6.80 -2.39 -0.02 1.50 16 27 H 0.01 0.32 5.86 -2.39 -0.01 0.31 16 28 H -0.02 -1.03 8.12 -2.39 -0.02 -1.05 16 29 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 30 H 0.02 0.83 6.30 -2.39 -0.02 0.82 16 31 H 0.07 2.40 6.64 -2.38 -0.02 2.38 16 32 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.40 5.80 9.12 -74.06 -0.68 5.12 16 35 H 0.07 2.13 7.90 -2.38 -0.02 2.11 16 36 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.06 1.86 8.13 -2.39 -0.02 1.84 16 41 H 0.05 1.65 5.53 -2.39 -0.01 1.64 16 Total: -1.00 -62.85 303.33 0.22 -62.62 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.33 Total: 18.59 kcal Atomic # 6 Polarization: -35.61 SS G_CDS: 3.26 Total: -32.35 kcal Atomic # 7 Polarization: -75.07 SS G_CDS: -3.42 Total: -78.49 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -1.97 Total: -16.35 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -62.85 0.22 -62.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695847828.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.708 kcal (2) G-P(sol) polarization free energy of solvation -62.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds