Wall clock time and date at job start Mon Mar 30 2020 05:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46737 * 2 1 4 4 N 1.46500 * 109.46838 * 179.97438 * 3 2 1 5 5 C 1.36939 * 119.99997 * 261.24019 * 4 3 2 6 6 H 1.08005 * 120.00268 * 136.20261 * 5 4 3 7 7 C 1.38812 * 119.99926 * 316.21563 * 5 4 3 8 8 N 1.31620 * 120.00156 * 166.02304 * 7 5 4 9 9 Si 1.86799 * 119.99812 * 346.01670 * 7 5 4 10 10 H 1.48494 * 109.47278 * 86.12368 * 9 7 5 11 11 H 1.48503 * 109.46869 * 206.12401 * 9 7 5 12 12 H 1.48505 * 109.47235 * 326.11855 * 9 7 5 13 13 C 1.46503 * 120.00548 * 80.96266 * 4 3 2 14 14 H 1.09003 * 109.46897 * 316.65627 * 13 4 3 15 15 C 1.52999 * 109.46767 * 76.65111 * 13 4 3 16 16 C 1.52995 * 109.47238 * 59.99960 * 15 13 4 17 17 C 1.53002 * 109.46861 * 60.00027 * 16 15 13 18 18 C 1.52999 * 109.47172 * 300.00013 * 17 16 15 19 19 C 1.52996 * 109.47691 * 196.65288 * 13 4 3 20 20 C 1.53001 * 109.47358 * 59.99739 * 19 13 4 21 21 O 1.42890 * 109.47215 * 180.02562 * 19 13 4 22 22 H 1.08994 * 109.47868 * 300.00004 * 1 2 3 23 23 H 1.09004 * 109.46907 * 60.00867 * 1 2 3 24 24 H 1.09004 * 109.46795 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47150 * 239.99418 * 2 1 3 26 26 H 1.09004 * 109.46907 * 119.99133 * 2 1 3 27 27 H 1.08993 * 109.47357 * 60.00086 * 3 2 1 28 28 H 1.08996 * 109.47081 * 299.99296 * 3 2 1 29 29 H 0.96995 * 120.00167 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.47264 * 180.02562 * 15 13 4 31 31 H 1.09008 * 109.47102 * 300.00118 * 15 13 4 32 32 H 1.08999 * 109.47536 * 299.99814 * 16 15 13 33 33 H 1.09003 * 109.47197 * 180.02562 * 16 15 13 34 34 H 1.09000 * 109.46988 * 179.97438 * 17 16 15 35 35 H 1.09007 * 109.47217 * 60.00220 * 17 16 15 36 36 H 1.08999 * 109.46705 * 299.99895 * 18 17 16 37 37 H 1.08998 * 109.46639 * 179.97438 * 18 17 16 38 38 H 1.09001 * 109.46841 * 73.80753 * 20 19 13 39 39 H 1.08991 * 109.47266 * 193.81031 * 20 19 13 40 40 H 1.09000 * 109.47048 * 313.81255 * 20 19 13 41 41 H 0.96702 * 113.99825 * 180.02562 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1891 1.6234 1.1730 6 1 5.0437 1.0034 1.4007 7 6 3.7841 2.6032 2.0689 8 7 4.2515 2.6037 3.2993 9 14 2.5758 3.9213 1.5282 10 1 1.1882 3.4224 1.7030 11 1 2.7713 5.1404 2.3534 12 1 2.8078 4.2490 0.0985 13 6 4.2381 1.2431 -1.2520 14 1 3.7728 0.4383 -1.8211 15 6 4.2050 2.5336 -2.0732 16 6 4.8579 3.6633 -1.2744 17 6 6.3096 3.2944 -0.9625 18 6 6.3427 2.0039 -0.1413 19 6 5.6898 0.8741 -0.9402 20 6 5.7229 -0.4163 -0.1188 21 8 6.4049 0.6802 -2.1619 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 1.6766 1.9563 0.8899 28 1 1.6766 1.9563 -0.8900 29 1 3.9688 3.2886 3.9253 30 1 4.7501 2.3851 -3.0054 31 1 3.1707 2.7964 -2.2954 32 1 4.3125 3.8118 -0.3425 33 1 4.8339 4.5828 -1.8593 34 1 6.7750 4.0995 -0.3938 35 1 6.8552 3.1461 -1.8946 36 1 5.7973 2.1523 0.7907 37 1 7.3770 1.7409 0.0805 38 1 5.4890 -1.2635 -0.7636 39 1 6.7164 -0.5491 0.3093 40 1 4.9868 -0.3558 0.6828 41 1 7.3344 0.4428 -2.0402 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699427664.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:47 Heat of formation + Delta-G solvation = -18.747233 kcal Electronic energy + Delta-G solvation = -19964.708564 eV Core-core repulsion = 17266.788798 eV Total energy + Delta-G solvation = -2697.919767 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.51027 -35.84470 -34.06665 -32.63956 -31.45585 -30.52831 -28.91589 -25.72806 -25.56131 -23.15935 -21.37999 -20.73263 -20.43024 -18.42702 -17.09050 -15.62364 -15.39288 -14.64825 -14.39733 -13.87705 -13.70431 -13.36962 -13.23682 -12.76187 -12.43158 -12.30188 -12.11820 -11.72469 -11.47243 -11.28822 -11.19713 -11.08514 -10.86916 -10.65198 -10.62385 -10.35145 -10.09079 -9.95654 -9.51184 -9.34552 -9.09447 -8.97034 -8.72938 -8.33332 -6.62933 -6.01642 -3.51049 3.27749 3.44450 3.47187 4.46323 4.62617 5.17867 5.36112 5.55002 5.64495 5.66455 5.73316 5.77811 5.98705 6.04769 6.05792 6.16506 6.19929 6.36094 6.38819 6.45137 6.48956 6.53665 6.58260 6.61101 6.62577 6.69390 6.77724 6.90505 6.98572 7.04597 7.06317 7.17098 7.24483 7.34239 7.77147 8.05083 8.30625 8.37330 8.96933 9.61915 10.10030 11.08054 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019045 B = 0.013618 C = 0.010903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.830903 B = 2055.539312 C = 2567.580303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C 0.134 3.866 4 N -0.600 5.600 5 C -0.270 4.270 6 H 0.106 0.894 7 C 0.036 3.964 8 N -0.902 5.902 9 Si 0.870 3.130 10 H -0.286 1.286 11 H -0.306 1.306 12 H -0.247 1.247 13 C 0.196 3.804 14 H 0.042 0.958 15 C -0.126 4.126 16 C -0.124 4.124 17 C -0.098 4.098 18 C -0.193 4.193 19 C 0.144 3.856 20 C -0.184 4.184 21 O -0.571 6.571 22 H 0.049 0.951 23 H 0.046 0.954 24 H 0.045 0.955 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.032 0.968 29 H 0.265 0.735 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.090 0.910 33 H 0.033 0.967 34 H 0.043 0.957 35 H 0.041 0.959 36 H 0.167 0.833 37 H 0.031 0.969 38 H 0.042 0.958 39 H 0.041 0.959 40 H 0.104 0.896 41 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.353 -2.337 -7.275 7.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.180 4.180 3 C 0.009 3.991 4 N -0.325 5.325 5 C -0.398 4.398 6 H 0.123 0.877 7 C -0.165 4.165 8 N -0.543 5.543 9 Si 0.701 3.299 10 H -0.214 1.214 11 H -0.234 1.234 12 H -0.172 1.172 13 C 0.089 3.911 14 H 0.060 0.940 15 C -0.165 4.165 16 C -0.161 4.161 17 C -0.135 4.135 18 C -0.229 4.229 19 C 0.104 3.896 20 C -0.241 4.241 21 O -0.375 6.375 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.108 0.892 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.183 0.817 37 H 0.050 0.950 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.123 0.877 41 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -0.904 -2.098 -7.368 7.714 hybrid contribution -0.075 0.679 -0.025 0.684 sum -0.980 -1.419 -7.393 7.592 Atomic orbital electron populations 1.21739 0.97360 1.00518 1.01079 1.22036 0.93852 1.00412 1.01680 1.21261 0.84190 0.94161 0.99466 1.44015 1.00005 1.85116 1.03336 1.18968 1.13629 1.13718 0.93504 0.87750 1.25651 0.97758 0.97287 0.95854 1.69770 1.45547 1.35193 1.03790 0.87296 0.80858 0.81948 0.79749 1.21383 1.23376 1.17212 1.20064 0.89567 0.94045 0.87377 0.94022 1.21934 0.98819 0.97484 0.98312 1.21714 0.96690 0.96012 1.01642 1.21232 0.96341 0.97481 0.98491 1.23496 0.99677 0.93818 1.05878 1.20997 0.92093 0.93781 0.82777 1.22759 1.02679 0.96685 1.01992 1.86432 1.25720 1.92620 1.32747 0.93152 0.93522 0.93606 0.93107 0.91661 0.91825 0.94970 0.92552 0.92847 0.93800 0.89168 0.94866 0.93791 0.93988 0.81687 0.94983 0.93918 0.93975 0.87712 0.79027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.91 37.16 0.37 -1.90 16 2 C -0.14 -2.52 6.22 -26.73 -0.17 -2.69 16 3 C 0.13 2.77 4.05 -4.04 -0.02 2.75 16 4 N -0.60 -13.03 1.33 -172.36 -0.23 -13.26 16 5 C -0.27 -6.59 4.73 -15.06 -0.07 -6.66 16 6 H 0.11 2.67 3.95 -52.48 -0.21 2.47 16 7 C 0.04 0.94 5.17 -17.43 -0.09 0.85 16 8 N -0.90 -25.49 13.97 55.49 0.78 -24.72 16 9 Si 0.87 20.89 23.28 -169.99 -3.96 16.93 16 10 H -0.29 -6.78 6.40 56.52 0.36 -6.42 16 11 H -0.31 -7.65 7.11 56.52 0.40 -7.25 16 12 H -0.25 -5.70 5.34 56.52 0.30 -5.40 16 13 C 0.20 3.96 2.33 -67.93 -0.16 3.80 16 14 H 0.04 0.84 7.78 -51.93 -0.40 0.44 16 15 C -0.13 -2.48 5.37 -26.73 -0.14 -2.63 16 16 C -0.12 -2.52 5.54 -26.73 -0.15 -2.67 16 17 C -0.10 -1.91 5.78 -26.73 -0.15 -2.06 16 18 C -0.19 -3.90 4.37 -26.73 -0.12 -4.02 16 19 C 0.14 2.75 0.73 -90.62 -0.07 2.68 16 20 C -0.18 -3.42 8.21 37.16 0.31 -3.11 16 21 O -0.57 -10.01 11.63 -35.23 -0.41 -10.42 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.88 7.78 -51.93 -0.40 0.48 16 26 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.06 1.44 3.76 -51.93 -0.20 1.24 16 28 H 0.03 0.63 7.43 -51.93 -0.39 0.25 16 29 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.05 1.02 7.68 -51.93 -0.40 0.62 16 31 H 0.04 0.85 7.48 -51.92 -0.39 0.46 16 32 H 0.09 2.05 2.66 -51.93 -0.14 1.91 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.04 0.77 7.68 -51.92 -0.40 0.37 16 36 H 0.17 3.93 3.44 -63.62 -0.22 3.71 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 40 H 0.10 2.21 5.04 -51.93 -0.26 1.95 16 41 H 0.36 5.07 9.05 45.56 0.41 5.48 16 LS Contribution 286.70 15.07 4.32 4.32 Total: -1.00 -26.55 286.70 -6.02 -32.57 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -6.07 Total: 10.25 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -0.46 Total: -15.66 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.55 Total: -37.98 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: -0.41 Total: -10.42 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -3.96 Total: 16.93 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -26.55 -6.02 -32.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699427664.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.823 kcal (2) G-P(sol) polarization free energy of solvation -26.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds