Wall clock time and date at job start Mon Mar 30 2020 04:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47064 * 2 1 4 4 H 1.09005 * 109.47132 * 304.99737 * 3 2 1 5 5 C 1.50706 * 109.46811 * 184.99863 * 3 2 1 6 6 H 1.08006 * 119.99632 * 239.99313 * 5 3 2 7 7 C 1.37873 * 119.99996 * 60.00157 * 5 3 2 8 8 N 1.31510 * 120.00219 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99719 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47368 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47017 * 119.99675 * 9 7 5 12 12 H 1.48494 * 109.47303 * 239.99615 * 9 7 5 13 13 N 1.46901 * 109.47483 * 64.99847 * 3 2 1 14 14 C 1.46848 * 111.00065 * 65.78768 * 13 3 2 15 15 C 1.53033 * 109.52354 * 185.84133 * 14 13 3 16 16 C 1.53118 * 109.27816 * 300.82384 * 15 14 13 17 17 H 1.09002 * 109.52209 * 177.56441 * 16 15 14 18 18 C 1.53008 * 109.52092 * 297.74616 * 16 15 14 19 19 C 1.53113 * 109.16592 * 57.65298 * 16 15 14 20 20 H 1.09001 * 109.53177 * 62.30514 * 19 16 15 21 21 C 1.52997 * 109.50786 * 182.40581 * 19 16 15 22 22 O 1.42898 * 109.47319 * 184.80539 * 21 19 16 23 23 C 1.46846 * 111.00050 * 190.00246 * 13 3 2 24 24 H 1.08995 * 109.46918 * 300.00303 * 1 2 3 25 25 H 1.09004 * 109.46690 * 60.00059 * 1 2 3 26 26 H 1.09001 * 109.47084 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.46918 * 239.99697 * 2 1 3 28 28 H 1.09004 * 109.46690 * 119.99941 * 2 1 3 29 29 H 0.97003 * 120.00084 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.46040 * 305.86060 * 14 13 3 31 31 H 1.08996 * 109.45947 * 65.82446 * 14 13 3 32 32 H 1.09005 * 109.50673 * 60.76145 * 15 14 13 33 33 H 1.09000 * 109.50323 * 180.83834 * 15 14 13 34 34 H 1.09001 * 109.47060 * 179.68396 * 18 16 15 35 35 H 1.08994 * 109.47071 * 299.68363 * 18 16 15 36 36 H 1.09002 * 109.46634 * 59.68465 * 18 16 15 37 37 H 1.09002 * 109.47153 * 64.80231 * 21 19 16 38 38 H 1.09001 * 109.46832 * 304.80422 * 21 19 16 39 39 H 0.96701 * 113.99881 * 180.02562 * 22 21 19 40 40 H 1.08994 * 109.46643 * 54.13988 * 23 13 3 41 41 H 1.09004 * 109.45975 * 294.17204 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8889 0.6524 7 6 4.1434 0.8783 -1.2279 8 7 3.4064 0.3366 -2.1728 9 14 6.0050 0.8811 -1.3816 10 1 6.5988 1.5461 -0.1940 11 1 6.4971 -0.5176 -1.4627 12 1 6.3992 1.6165 -2.6100 13 7 1.6514 2.0993 1.2552 14 6 2.3292 1.4836 2.4032 15 6 1.7931 2.0928 3.7007 16 6 2.0394 3.6040 3.6891 17 1 1.6205 4.0483 4.5920 18 6 3.5440 3.8764 3.6344 19 6 1.3639 4.2140 2.4578 20 1 0.2873 4.0541 2.5161 21 6 1.6555 5.7150 2.4061 22 8 0.9344 6.3033 1.3217 23 6 1.9124 3.5432 1.1963 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 3.8295 -0.0619 -2.9494 30 1 2.1425 0.4097 2.4019 31 1 3.4015 1.6657 2.3323 32 1 0.7233 1.8991 3.7789 33 1 2.3070 1.6462 4.5519 34 1 3.7182 4.9524 3.6206 35 1 4.0240 3.4420 4.5113 36 1 3.9617 3.4291 2.7325 37 1 2.7241 5.8728 2.2600 38 1 1.3446 6.1779 3.3427 39 1 1.0724 7.2558 1.2284 40 1 1.4231 3.9653 0.3185 41 1 2.9867 3.7157 1.1311 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700374324.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:43 Heat of formation + Delta-G solvation = -64.801245 kcal Electronic energy + Delta-G solvation = -19109.133211 eV Core-core repulsion = 16409.216392 eV Total energy + Delta-G solvation = -2699.916819 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.26855 -36.54593 -35.05791 -32.16553 -30.92393 -30.74673 -27.62622 -26.18556 -24.89626 -23.51668 -21.85481 -21.45348 -18.93707 -18.04509 -17.09868 -16.14160 -15.46287 -15.09211 -14.63608 -13.91326 -13.78213 -13.62490 -13.13471 -13.08345 -12.66905 -12.20583 -11.97941 -11.62229 -11.45703 -11.22847 -11.04300 -11.01960 -10.85055 -10.63564 -10.44462 -10.29844 -10.01892 -9.94201 -9.68761 -9.60647 -9.47674 -9.16248 -8.94518 -8.31363 -6.96759 -5.93557 -4.07059 3.26966 3.35654 3.38220 4.41951 4.42413 4.95692 5.15874 5.29092 5.29649 5.40581 5.44577 5.60135 5.81530 5.92113 5.94266 6.03964 6.13129 6.21977 6.34479 6.39297 6.41786 6.51966 6.54545 6.58903 6.70947 6.75735 6.88550 6.92731 7.05207 7.20139 7.27536 7.45303 7.68714 7.81166 7.83164 8.07995 8.24087 8.42763 8.58128 9.04259 9.60067 11.04963 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020319 B = 0.008639 C = 0.007811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.708402 B = 3240.223493 C = 3583.970851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 C 0.214 3.786 4 H 0.037 0.963 5 C -0.539 4.539 6 H 0.056 0.944 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.884 3.116 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.534 5.534 14 C 0.059 3.941 15 C -0.111 4.111 16 C -0.081 4.081 17 H 0.059 0.941 18 C -0.156 4.156 19 C -0.080 4.080 20 H 0.077 0.923 21 C 0.081 3.919 22 O -0.569 6.569 23 C 0.076 3.924 24 H 0.047 0.953 25 H 0.038 0.962 26 H 0.024 0.976 27 H 0.091 0.909 28 H 0.032 0.968 29 H 0.260 0.740 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.045 0.955 38 H 0.037 0.963 39 H 0.371 0.629 40 H 0.067 0.933 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.426 7.164 9.922 12.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C 0.108 3.892 4 H 0.055 0.945 5 C -0.578 4.578 6 H 0.074 0.926 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.713 3.287 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.258 5.258 14 C -0.069 4.069 15 C -0.149 4.149 16 C -0.100 4.100 17 H 0.078 0.922 18 C -0.213 4.213 19 C -0.099 4.099 20 H 0.096 0.904 21 C 0.003 3.997 22 O -0.373 6.373 23 C -0.053 4.053 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.043 0.957 27 H 0.109 0.891 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.217 0.783 40 H 0.085 0.915 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.116 6.367 9.720 12.030 hybrid contribution 2.220 0.669 -0.179 2.325 sum -0.896 7.036 9.541 11.888 Atomic orbital electron populations 1.21704 0.98906 0.98273 1.00610 1.21592 0.92230 0.99249 1.01780 1.19257 0.92940 0.91131 0.85895 0.94523 1.21787 0.92960 1.37712 1.05314 0.92602 1.24908 0.97624 0.95201 0.95755 1.69887 1.34557 1.38491 1.09440 0.86663 0.86501 0.77661 0.77906 1.20021 1.21058 1.21084 1.62338 1.57072 1.01684 1.04683 1.21930 0.96817 0.98584 0.89569 1.21650 1.01195 0.94078 0.98011 1.21057 0.95527 0.96631 0.96760 0.92234 1.22030 0.96025 1.00713 1.02509 1.21209 1.01114 0.91506 0.96113 0.90445 1.22311 0.94840 0.94335 0.88180 1.86560 1.71882 1.26046 1.52808 1.21787 0.98336 0.89421 0.95719 0.93345 0.94282 0.95733 0.89078 0.94969 0.93031 0.91470 0.94215 0.91925 0.92613 0.93301 0.93197 0.91246 0.93651 0.94431 0.78295 0.91490 0.94793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.80 37.16 0.36 -2.53 16 2 C -0.11 -2.65 5.16 -26.73 -0.14 -2.79 16 3 C 0.21 5.35 1.71 -68.86 -0.12 5.23 16 4 H 0.04 1.03 7.99 -51.93 -0.41 0.62 16 5 C -0.54 -14.43 7.23 -34.44 -0.25 -14.67 16 6 H 0.06 1.51 5.84 -52.48 -0.31 1.20 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -25.09 11.29 55.43 0.63 -24.47 16 9 Si 0.88 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.53 -11.42 4.06 -228.08 -0.93 -12.34 16 14 C 0.06 1.16 4.54 -3.84 -0.02 1.14 16 15 C -0.11 -1.75 5.60 -26.65 -0.15 -1.90 16 16 C -0.08 -1.18 2.77 -90.50 -0.25 -1.43 16 17 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 18 C -0.16 -2.22 8.20 37.16 0.30 -1.92 16 19 C -0.08 -1.30 2.37 -90.54 -0.21 -1.52 16 20 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 21 C 0.08 1.12 5.86 37.16 0.22 1.33 16 22 O -0.57 -8.14 13.21 -35.23 -0.47 -8.61 16 23 C 0.08 1.52 4.11 -3.83 -0.02 1.51 16 24 H 0.05 0.98 7.75 -51.93 -0.40 0.58 16 25 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.09 2.45 5.95 -51.93 -0.31 2.14 16 28 H 0.03 0.76 6.22 -51.93 -0.32 0.43 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.07 1.37 6.12 -51.93 -0.32 1.05 16 31 H 0.04 0.84 4.74 -51.93 -0.25 0.60 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.62 6.51 -51.93 -0.34 0.28 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 1.19 4.92 -51.93 -0.26 0.93 16 37 H 0.05 0.61 6.67 -51.93 -0.35 0.26 16 38 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.37 3.38 9.12 45.56 0.42 3.79 16 40 H 0.07 1.47 7.72 -51.93 -0.40 1.07 16 41 H 0.03 0.73 5.67 -51.93 -0.29 0.44 16 LS Contribution 300.73 15.07 4.53 4.53 Total: -1.00 -28.87 300.73 -7.67 -36.54 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.06 Total: 3.91 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -0.36 Total: -15.79 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: -0.30 Total: -36.81 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -0.47 Total: -8.61 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.87 -7.67 -36.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700374324.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.263 kcal (2) G-P(sol) polarization free energy of solvation -28.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds