Wall clock time and date at job start Mon Mar 30 2020 04:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47123 * 2 1 4 4 H 1.09002 * 109.46983 * 303.14674 * 3 2 1 5 5 C 1.50703 * 109.46782 * 183.14535 * 3 2 1 6 6 H 1.07996 * 120.00249 * 245.17243 * 5 3 2 7 7 C 1.37880 * 119.99695 * 65.18044 * 5 3 2 8 8 N 1.31519 * 119.99631 * 187.17482 * 7 5 3 9 9 Si 1.86794 * 120.00192 * 7.17329 * 7 5 3 10 10 H 1.48500 * 109.47105 * 269.99878 * 9 7 5 11 11 H 1.48493 * 109.47236 * 30.00113 * 9 7 5 12 12 H 1.48498 * 109.46942 * 150.00490 * 9 7 5 13 13 N 1.46897 * 109.47110 * 63.14526 * 3 2 1 14 14 C 1.46850 * 110.99893 * 66.04709 * 13 3 2 15 15 C 1.53039 * 109.52616 * 185.83862 * 14 13 3 16 16 C 1.53118 * 109.27474 * 300.81960 * 15 14 13 17 17 H 1.09001 * 109.52599 * 297.68140 * 16 15 14 18 18 C 1.53005 * 109.52027 * 177.55652 * 16 15 14 19 19 C 1.53120 * 109.16111 * 57.65240 * 16 15 14 20 20 H 1.09001 * 109.50252 * 62.28711 * 19 16 15 21 21 C 1.52999 * 109.50236 * 182.36195 * 19 16 15 22 22 O 1.42904 * 109.47241 * 185.00393 * 21 19 16 23 23 C 1.46848 * 110.99983 * 190.25186 * 13 3 2 24 24 H 1.08997 * 109.47238 * 300.00262 * 1 2 3 25 25 H 1.09005 * 109.47119 * 59.99832 * 1 2 3 26 26 H 1.08998 * 109.47278 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47238 * 239.99738 * 2 1 3 28 28 H 1.09002 * 109.46634 * 120.00151 * 2 1 3 29 29 H 0.96997 * 119.99631 * 354.94430 * 8 7 5 30 30 H 1.09003 * 109.46073 * 305.85466 * 14 13 3 31 31 H 1.09005 * 109.46516 * 65.82002 * 14 13 3 32 32 H 1.09001 * 109.50142 * 60.75932 * 15 14 13 33 33 H 1.09001 * 109.50688 * 180.83515 * 15 14 13 34 34 H 1.08998 * 109.46987 * 60.00353 * 18 16 15 35 35 H 1.09001 * 109.46927 * 180.02562 * 18 16 15 36 36 H 1.08998 * 109.46877 * 299.99987 * 18 16 15 37 37 H 1.08998 * 109.47189 * 305.00116 * 21 19 16 38 38 H 1.08993 * 109.47224 * 64.99960 * 21 19 16 39 39 H 0.96698 * 114.00147 * 180.02562 * 22 21 19 40 40 H 1.08999 * 109.46146 * 294.17711 * 23 13 3 41 41 H 1.08995 * 109.46030 * 54.15184 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6313 1.9724 -0.8605 5 6 3.5450 1.4431 -0.0780 6 1 4.1284 1.8205 0.7488 7 6 4.1771 0.9621 -1.2050 8 7 5.4856 0.8307 -1.2194 9 14 3.1750 0.4971 -2.7112 10 1 2.7836 -0.9327 -2.6232 11 1 1.9550 1.3413 -2.7740 12 1 3.9898 0.7128 -3.9338 13 7 1.6134 2.1127 1.2356 14 6 2.2604 1.5134 2.4097 15 6 1.6855 2.1359 3.6841 16 6 1.9266 3.6478 3.6614 17 1 2.9984 3.8457 3.6517 18 6 1.3004 4.2841 4.9039 19 6 1.2842 4.2403 2.4040 20 1 0.2070 4.0764 2.4340 21 6 1.5708 5.7420 2.3432 22 8 0.8751 6.3152 1.2344 23 6 1.8708 3.5568 1.1668 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8932 -0.5139 0.8900 29 1 6.0124 1.1401 -0.4660 30 1 2.0778 0.4388 2.4161 31 1 3.3337 1.6989 2.3672 32 1 0.6146 1.9388 3.7342 33 1 2.1765 1.7015 4.5549 34 1 1.7543 3.8577 5.7984 35 1 1.4721 5.3604 4.8867 36 1 0.2283 4.0877 4.9115 37 1 1.2344 6.2138 3.2664 38 1 2.6420 5.9028 2.2225 39 1 1.0115 7.2673 1.1341 40 1 2.9459 3.7327 1.1302 41 1 1.4050 3.9664 0.2706 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700374326.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:46 Heat of formation + Delta-G solvation = -91.657434 kcal Electronic energy + Delta-G solvation = -18966.771462 eV Core-core repulsion = 16265.690072 eV Total energy + Delta-G solvation = -2701.081390 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.63950 -38.06175 -36.64964 -34.39478 -33.25886 -32.25999 -29.56441 -27.86393 -26.40670 -24.27537 -23.13860 -22.93097 -20.99491 -20.73102 -19.29085 -18.25138 -17.13384 -16.37400 -15.83388 -15.64245 -15.39234 -15.12623 -14.82546 -14.55298 -14.45471 -14.04549 -13.60282 -13.53392 -13.29149 -13.02827 -12.71673 -12.58839 -12.42007 -12.23721 -12.06372 -11.94753 -11.54631 -11.50486 -11.46457 -11.16106 -11.02524 -10.89968 -10.70878 -10.58355 -9.21178 -8.53322 -6.41039 1.38787 1.48762 1.65772 2.42735 3.05982 3.21013 3.35969 3.82940 3.90739 4.03778 4.17748 4.33275 4.40209 4.48435 4.51194 4.58264 4.61674 4.65385 4.74365 4.78140 4.82211 4.91339 4.93953 5.03510 5.08250 5.15081 5.20081 5.24091 5.25388 5.36307 5.37282 5.47276 5.56326 5.62459 5.91174 5.97577 6.20190 6.51914 6.70858 6.94471 7.38260 8.62406 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024206 B = 0.007950 C = 0.007466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.441153 B = 3521.202937 C = 3749.516878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.117 4.117 3 C 0.181 3.819 4 H 0.025 0.975 5 C -0.607 4.607 6 H 0.021 0.979 7 C -0.024 4.024 8 N -0.946 5.946 9 Si 1.089 2.911 10 H -0.260 1.260 11 H -0.255 1.255 12 H -0.293 1.293 13 N -0.518 5.518 14 C 0.063 3.937 15 C -0.101 4.101 16 C -0.084 4.084 17 H 0.050 0.950 18 C -0.138 4.138 19 C -0.071 4.071 20 H 0.080 0.920 21 C 0.084 3.916 22 O -0.591 6.591 23 C 0.080 3.920 24 H 0.064 0.936 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.041 0.959 28 H 0.049 0.951 29 H 0.248 0.752 30 H 0.063 0.937 31 H -0.002 1.002 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.035 0.965 39 H 0.394 0.606 40 H -0.004 1.004 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.673 7.250 10.042 17.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.155 4.155 3 C 0.072 3.928 4 H 0.043 0.957 5 C -0.646 4.646 6 H 0.039 0.961 7 C -0.221 4.221 8 N -0.584 5.584 9 Si 0.911 3.089 10 H -0.186 1.186 11 H -0.180 1.180 12 H -0.220 1.220 13 N -0.240 5.240 14 C -0.066 4.066 15 C -0.139 4.139 16 C -0.102 4.102 17 H 0.068 0.932 18 C -0.195 4.195 19 C -0.090 4.090 20 H 0.099 0.901 21 C 0.006 3.994 22 O -0.399 6.399 23 C -0.049 4.049 24 H 0.083 0.917 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.016 0.984 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.053 0.947 39 H 0.244 0.756 40 H 0.014 0.986 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.271 5.924 8.522 16.072 hybrid contribution 2.128 1.268 1.259 2.779 sum -10.143 7.192 9.781 15.820 Atomic orbital electron populations 1.21641 0.94349 1.01104 1.01995 1.21776 0.96553 0.97113 1.00069 1.19652 0.91636 0.92175 0.89330 0.95717 1.22835 0.94037 1.44876 1.02836 0.96074 1.27122 0.97140 0.93925 1.03944 1.70951 1.06985 1.45858 1.34570 0.83450 0.74667 0.78368 0.72372 1.18553 1.17994 1.22000 1.62327 1.56484 1.02378 1.02859 1.21943 0.94776 0.98740 0.91100 1.21628 1.01904 0.94608 0.95721 1.21103 0.99007 0.95358 0.94774 0.93164 1.21828 1.01137 1.00752 0.95807 1.21172 1.00970 0.93120 0.93766 0.90128 1.22273 0.94842 0.92955 0.89354 1.86483 1.73499 1.28677 1.51244 1.21770 0.96084 0.88755 0.98271 0.91739 0.93580 0.92201 0.94093 0.93244 0.94307 0.91876 0.98354 0.90425 0.90504 0.91654 0.91502 0.91769 0.90393 0.94708 0.75619 0.98614 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 9.78 71.98 0.70 -3.91 16 2 C -0.12 -5.06 4.92 30.59 0.15 -4.91 16 3 C 0.18 8.75 1.30 44.17 0.06 8.81 16 4 H 0.02 1.27 6.45 -2.39 -0.02 1.25 16 5 C -0.61 -35.09 7.60 25.60 0.19 -34.90 16 6 H 0.02 1.35 6.08 -2.91 -0.02 1.34 16 7 C -0.02 -1.44 5.42 84.65 0.46 -0.98 16 8 N -0.95 -61.13 13.70 21.45 0.29 -60.83 16 9 Si 1.09 52.53 25.41 68.60 1.74 54.27 16 10 H -0.26 -11.56 6.75 99.48 0.67 -10.89 16 11 H -0.26 -11.33 6.37 99.48 0.63 -10.70 16 12 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 13 N -0.52 -21.95 3.97 -875.49 -3.48 -25.43 16 14 C 0.06 2.51 4.78 86.33 0.41 2.92 16 15 C -0.10 -2.97 5.38 30.65 0.16 -2.80 16 16 C -0.08 -2.28 2.29 -10.71 -0.02 -2.30 16 17 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 18 C -0.14 -2.63 8.91 71.98 0.64 -1.99 16 19 C -0.07 -2.19 2.09 -10.74 -0.02 -2.21 16 20 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 21 C 0.08 2.12 6.26 71.98 0.45 2.57 16 22 O -0.59 -15.60 13.22 -148.98 -1.97 -17.57 16 23 C 0.08 3.29 4.37 86.32 0.38 3.66 16 24 H 0.06 2.17 7.70 -2.39 -0.02 2.15 16 25 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 26 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.04 1.83 4.47 -2.39 -0.01 1.82 16 28 H 0.05 2.15 6.30 -2.39 -0.02 2.14 16 29 H 0.25 16.32 8.72 -92.71 -0.81 15.51 16 30 H 0.06 2.54 6.16 -2.39 -0.01 2.52 16 31 H 0.00 -0.09 6.28 -2.38 -0.01 -0.10 16 32 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.07 1.09 6.41 -2.39 -0.02 1.07 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 1.48 6.27 -2.39 -0.01 1.46 16 38 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.39 6.21 9.12 -74.06 -0.68 5.53 16 40 H 0.00 -0.22 7.42 -2.39 -0.02 -0.23 16 41 H 0.05 2.28 7.72 -2.39 -0.02 2.26 16 Total: -1.00 -69.84 301.99 0.33 -69.51 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.18 Total: 16.09 kcal Atomic # 6 Polarization: -39.60 SS G_CDS: 3.56 Total: -36.03 kcal Atomic # 7 Polarization: -83.08 SS G_CDS: -3.19 Total: -86.27 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -1.97 Total: -17.57 kcal Atomic # 14 Polarization: 52.53 SS G_CDS: 1.74 Total: 54.27 kcal Total: -69.84 0.33 -69.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700374326.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.149 kcal (2) G-P(sol) polarization free energy of solvation -69.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds