Wall clock time and date at job start Mon Mar 30 2020 04:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.46730 * 2 1 4 4 H 1.09005 * 109.46634 * 302.80121 * 3 2 1 5 5 C 1.50700 * 109.46624 * 182.80919 * 3 2 1 6 6 H 1.08003 * 119.99785 * 239.99352 * 5 3 2 7 7 C 1.37874 * 120.00490 * 59.99728 * 5 3 2 8 8 N 1.31514 * 119.99804 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00171 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46582 * 90.00203 * 9 7 5 11 11 H 1.48496 * 109.46880 * 210.00145 * 9 7 5 12 12 H 1.48502 * 109.47078 * 330.00467 * 9 7 5 13 13 N 1.46896 * 109.47199 * 62.80474 * 3 2 1 14 14 C 1.46848 * 111.00054 * 189.01823 * 13 3 2 15 15 C 1.53035 * 109.52457 * 174.16330 * 14 13 3 16 16 C 1.53116 * 109.27676 * 59.18267 * 15 14 13 17 17 H 1.08999 * 109.52135 * 182.44378 * 16 15 14 18 18 C 1.52997 * 109.57396 * 62.28596 * 16 15 14 19 19 C 1.53116 * 109.16051 * 302.34516 * 16 15 14 20 20 H 1.09004 * 109.50514 * 297.67225 * 19 16 15 21 21 C 1.53004 * 109.50404 * 177.59641 * 19 16 15 22 22 O 1.42894 * 109.47409 * 175.07456 * 21 19 16 23 23 C 1.46855 * 110.99477 * 64.77362 * 13 3 2 24 24 H 1.09004 * 109.46372 * 174.75493 * 1 2 3 25 25 H 1.08997 * 109.46918 * 294.75230 * 1 2 3 26 26 H 1.08998 * 109.46785 * 54.75838 * 1 2 3 27 27 H 1.08999 * 109.47805 * 239.99997 * 2 1 3 28 28 H 1.09000 * 109.47207 * 119.99282 * 2 1 3 29 29 H 0.96998 * 119.99969 * 179.97438 * 8 7 5 30 30 H 1.09009 * 109.45613 * 54.14839 * 14 13 3 31 31 H 1.08997 * 109.45383 * 294.17633 * 14 13 3 32 32 H 1.08998 * 109.50030 * 299.24233 * 15 14 13 33 33 H 1.09003 * 109.50112 * 179.12597 * 15 14 13 34 34 H 1.09007 * 109.46947 * 300.27821 * 18 16 15 35 35 H 1.08989 * 109.47647 * 60.28071 * 18 16 15 36 36 H 1.09006 * 109.46703 * 180.28892 * 18 16 15 37 37 H 1.09004 * 109.46802 * 55.07940 * 21 19 16 38 38 H 1.08997 * 109.47195 * 295.08276 * 21 19 16 39 39 H 0.96702 * 114.00085 * 179.97438 * 22 21 19 40 40 H 1.08999 * 109.42706 * 65.80168 * 23 13 3 41 41 H 1.08998 * 109.49486 * 305.83447 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6361 1.9707 -0.8639 5 6 3.5454 1.4432 -0.0696 6 1 4.1224 1.8978 0.7221 7 6 4.1861 0.8633 -1.1440 8 7 3.4835 0.3102 -2.1083 9 14 6.0521 0.8647 -1.2306 10 1 6.5789 -0.3586 -0.5738 11 1 6.4816 0.8876 -2.6519 12 1 6.5791 2.0661 -0.5347 13 7 1.6064 2.1152 1.2318 14 6 1.8908 3.5547 1.1735 15 6 1.2975 4.2436 2.4045 16 6 1.9096 3.6343 3.6689 17 1 1.4581 4.0919 4.5491 18 6 3.4189 3.8850 3.6797 19 6 1.6411 2.1270 3.6811 20 1 0.5662 1.9491 3.7146 21 6 2.3010 1.5005 4.9112 22 8 1.9550 0.1160 4.9843 23 6 2.2237 1.4987 2.4132 24 1 -0.3632 -1.0234 -0.0940 25 1 -0.3633 0.4303 0.9332 26 1 -0.3633 0.5930 -0.8393 27 1 1.8935 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 3.9342 -0.0974 -2.8643 30 1 1.4464 3.9764 0.2718 31 1 2.9693 3.7112 1.1542 32 1 0.2172 4.0990 2.4172 33 1 1.5222 5.3096 2.3687 34 1 3.8693 3.4289 2.7979 35 1 3.6091 4.9581 3.6709 36 1 3.8536 3.4461 4.5778 37 1 1.9525 2.0100 5.8096 38 1 3.3836 1.6009 4.8334 39 1 2.3398 -0.3462 5.7415 40 1 3.3007 1.6645 2.3876 41 1 2.0210 0.4278 2.4123 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700374328.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:50 Heat of formation + Delta-G solvation = -64.901772 kcal Electronic energy + Delta-G solvation = -19198.085090 eV Core-core repulsion = 16498.163912 eV Total energy + Delta-G solvation = -2699.921178 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.27105 -36.47564 -35.08102 -32.17051 -31.18195 -30.44614 -27.59534 -26.11619 -25.02708 -23.50783 -22.15906 -20.93095 -19.09391 -18.04920 -17.06355 -16.17858 -15.55719 -14.86011 -14.65168 -14.01800 -13.73253 -13.47655 -13.25640 -13.03281 -12.64476 -12.34234 -11.78248 -11.65103 -11.47941 -11.25973 -11.05026 -10.97335 -10.82149 -10.60188 -10.48949 -10.30385 -10.07714 -9.86715 -9.62684 -9.59292 -9.52906 -9.12076 -8.93582 -8.30839 -6.96572 -5.93097 -4.06459 3.28308 3.35542 3.37595 4.42674 4.44489 4.97364 5.15531 5.27874 5.32267 5.41534 5.45220 5.61105 5.81948 5.91460 5.93727 6.03951 6.13553 6.23609 6.34566 6.39035 6.43986 6.51411 6.56129 6.58910 6.70198 6.77542 6.86410 6.96492 7.06654 7.23610 7.30066 7.46509 7.70022 7.83905 7.84716 8.08460 8.24974 8.43382 8.58420 9.04423 9.60547 11.05524 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020134 B = 0.008889 C = 0.008255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.345040 B = 3149.095834 C = 3391.028364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 C 0.215 3.785 4 H 0.036 0.964 5 C -0.539 4.539 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.884 3.116 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.534 5.534 14 C 0.061 3.939 15 C -0.109 4.109 16 C -0.081 4.081 17 H 0.059 0.941 18 C -0.156 4.156 19 C -0.082 4.082 20 H 0.076 0.924 21 C 0.082 3.918 22 O -0.568 6.568 23 C 0.074 3.926 24 H 0.023 0.977 25 H 0.046 0.954 26 H 0.038 0.962 27 H 0.090 0.910 28 H 0.034 0.966 29 H 0.260 0.740 30 H 0.060 0.940 31 H 0.037 0.963 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.037 0.963 38 H 0.045 0.955 39 H 0.371 0.629 40 H 0.036 0.964 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.278 4.274 11.546 12.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.149 4.149 3 C 0.109 3.891 4 H 0.054 0.946 5 C -0.578 4.578 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.713 3.287 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.258 5.258 14 C -0.068 4.068 15 C -0.147 4.147 16 C -0.100 4.100 17 H 0.078 0.922 18 C -0.213 4.213 19 C -0.101 4.101 20 H 0.095 0.905 21 C 0.004 3.996 22 O -0.372 6.372 23 C -0.054 4.054 24 H 0.043 0.957 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.108 0.892 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.217 0.783 40 H 0.054 0.946 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.100 4.284 10.831 12.054 hybrid contribution 2.357 -0.041 0.346 2.382 sum -0.744 4.243 11.177 11.979 Atomic orbital electron populations 1.21681 0.98908 0.98221 1.00476 1.21591 0.92185 0.99196 1.01899 1.19259 0.92566 0.91036 0.86283 0.94578 1.21744 0.92840 1.37224 1.06042 0.92704 1.24902 0.97722 0.95180 0.95619 1.69878 1.34818 1.37892 1.09817 0.86721 0.86549 0.78313 0.77161 1.20743 1.21242 1.20149 1.62346 1.58052 1.01382 1.04041 1.21867 0.98540 0.90197 0.96152 1.21617 1.00336 0.98116 0.94669 1.21055 0.95928 0.94962 0.98052 0.92243 1.22027 0.96075 1.00937 1.02234 1.21240 1.00937 0.93631 0.94337 0.90540 1.22302 0.98293 0.81567 0.97465 1.86566 1.76230 1.22711 1.51696 1.21853 0.96355 0.98958 0.88229 0.95742 0.93500 0.94330 0.89186 0.94761 0.92982 0.92157 0.94498 0.91835 0.92567 0.91260 0.93213 0.93281 0.94512 0.93700 0.78340 0.94564 0.90693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.71 37.16 0.36 -2.53 16 2 C -0.11 -2.70 5.09 -26.73 -0.14 -2.84 16 3 C 0.21 5.37 1.73 -68.86 -0.12 5.25 16 4 H 0.04 1.00 8.01 -51.93 -0.42 0.59 16 5 C -0.54 -14.49 7.22 -34.44 -0.25 -14.73 16 6 H 0.05 1.48 5.84 -52.48 -0.31 1.17 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 8 N -0.89 -25.13 11.30 55.43 0.63 -24.50 16 9 Si 0.88 21.29 29.54 -169.99 -5.02 16.27 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.53 -11.43 4.07 -228.07 -0.93 -12.36 16 14 C 0.06 1.18 4.93 -3.83 -0.02 1.17 16 15 C -0.11 -1.70 5.60 -26.65 -0.15 -1.85 16 16 C -0.08 -1.18 2.77 -90.50 -0.25 -1.43 16 17 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 18 C -0.16 -2.22 8.21 37.16 0.30 -1.92 16 19 C -0.08 -1.35 2.37 -90.54 -0.21 -1.56 16 20 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 21 C 0.08 1.14 5.86 37.16 0.22 1.36 16 22 O -0.57 -8.31 13.22 -35.23 -0.47 -8.77 16 23 C 0.07 1.50 3.71 -3.83 -0.01 1.49 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.97 7.84 -51.93 -0.41 0.56 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.09 2.44 6.00 -51.93 -0.31 2.13 16 28 H 0.03 0.84 6.27 -51.93 -0.33 0.52 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.06 1.19 8.03 -51.92 -0.42 0.78 16 31 H 0.04 0.77 5.60 -51.93 -0.29 0.48 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 1.18 4.93 -51.93 -0.26 0.93 16 35 H 0.05 0.64 8.14 -51.94 -0.42 0.21 16 36 H 0.05 0.62 6.51 -51.93 -0.34 0.29 16 37 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.04 0.61 6.68 -51.93 -0.35 0.27 16 39 H 0.37 3.49 9.12 45.56 0.42 3.91 16 40 H 0.04 0.79 4.80 -51.93 -0.25 0.54 16 41 H 0.07 1.68 5.83 -51.93 -0.30 1.37 16 LS Contribution 300.83 15.07 4.53 4.53 Total: -1.00 -28.91 300.83 -7.68 -36.60 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.07 Total: 4.06 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -0.36 Total: -15.83 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: -0.30 Total: -36.86 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -0.47 Total: -8.77 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.91 -7.68 -36.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700374328.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.303 kcal (2) G-P(sol) polarization free energy of solvation -28.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds