Wall clock time and date at job start Mon Mar 30 2020 04:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.46730 * 2 1 4 4 H 1.09005 * 109.46634 * 302.80121 * 3 2 1 5 5 C 1.50700 * 109.46624 * 182.80919 * 3 2 1 6 6 H 1.08003 * 119.99785 * 239.99352 * 5 3 2 7 7 C 1.37874 * 120.00490 * 59.99728 * 5 3 2 8 8 N 1.31514 * 119.99804 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00171 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46582 * 90.00203 * 9 7 5 11 11 H 1.48496 * 109.46880 * 210.00145 * 9 7 5 12 12 H 1.48502 * 109.47078 * 330.00467 * 9 7 5 13 13 N 1.46896 * 109.47199 * 62.80474 * 3 2 1 14 14 C 1.46848 * 111.00054 * 189.01823 * 13 3 2 15 15 C 1.53035 * 109.52457 * 174.16330 * 14 13 3 16 16 C 1.53116 * 109.27676 * 59.18267 * 15 14 13 17 17 H 1.08999 * 109.52135 * 182.44378 * 16 15 14 18 18 C 1.52997 * 109.57396 * 62.28596 * 16 15 14 19 19 C 1.53116 * 109.16051 * 302.34516 * 16 15 14 20 20 H 1.09004 * 109.50514 * 297.67225 * 19 16 15 21 21 C 1.53004 * 109.50404 * 177.59641 * 19 16 15 22 22 O 1.42894 * 109.47409 * 175.07456 * 21 19 16 23 23 C 1.46855 * 110.99477 * 64.77362 * 13 3 2 24 24 H 1.09004 * 109.46372 * 174.75493 * 1 2 3 25 25 H 1.08997 * 109.46918 * 294.75230 * 1 2 3 26 26 H 1.08998 * 109.46785 * 54.75838 * 1 2 3 27 27 H 1.08999 * 109.47805 * 239.99997 * 2 1 3 28 28 H 1.09000 * 109.47207 * 119.99282 * 2 1 3 29 29 H 0.96998 * 119.99969 * 179.97438 * 8 7 5 30 30 H 1.09009 * 109.45613 * 54.14839 * 14 13 3 31 31 H 1.08997 * 109.45383 * 294.17633 * 14 13 3 32 32 H 1.08998 * 109.50030 * 299.24233 * 15 14 13 33 33 H 1.09003 * 109.50112 * 179.12597 * 15 14 13 34 34 H 1.09007 * 109.46947 * 300.27821 * 18 16 15 35 35 H 1.08989 * 109.47647 * 60.28071 * 18 16 15 36 36 H 1.09006 * 109.46703 * 180.28892 * 18 16 15 37 37 H 1.09004 * 109.46802 * 55.07940 * 21 19 16 38 38 H 1.08997 * 109.47195 * 295.08276 * 21 19 16 39 39 H 0.96702 * 114.00085 * 179.97438 * 22 21 19 40 40 H 1.08999 * 109.42706 * 65.80168 * 23 13 3 41 41 H 1.08998 * 109.49486 * 305.83447 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6361 1.9707 -0.8639 5 6 3.5454 1.4432 -0.0696 6 1 4.1224 1.8978 0.7221 7 6 4.1861 0.8633 -1.1440 8 7 3.4835 0.3102 -2.1083 9 14 6.0521 0.8647 -1.2306 10 1 6.5789 -0.3586 -0.5738 11 1 6.4816 0.8876 -2.6519 12 1 6.5791 2.0661 -0.5347 13 7 1.6064 2.1152 1.2318 14 6 1.8908 3.5547 1.1735 15 6 1.2975 4.2436 2.4045 16 6 1.9096 3.6343 3.6689 17 1 1.4581 4.0919 4.5491 18 6 3.4189 3.8850 3.6797 19 6 1.6411 2.1270 3.6811 20 1 0.5662 1.9491 3.7146 21 6 2.3010 1.5005 4.9112 22 8 1.9550 0.1160 4.9843 23 6 2.2237 1.4987 2.4132 24 1 -0.3632 -1.0234 -0.0940 25 1 -0.3633 0.4303 0.9332 26 1 -0.3633 0.5930 -0.8393 27 1 1.8935 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 3.9342 -0.0974 -2.8643 30 1 1.4464 3.9764 0.2718 31 1 2.9693 3.7112 1.1542 32 1 0.2172 4.0990 2.4172 33 1 1.5222 5.3096 2.3687 34 1 3.8693 3.4289 2.7979 35 1 3.6091 4.9581 3.6709 36 1 3.8536 3.4461 4.5778 37 1 1.9525 2.0100 5.8096 38 1 3.3836 1.6009 4.8334 39 1 2.3398 -0.3462 5.7415 40 1 3.3007 1.6645 2.3876 41 1 2.0210 0.4278 2.4123 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700374328.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:49 Heat of formation + Delta-G solvation = -85.088720 kcal Electronic energy + Delta-G solvation = -19198.960462 eV Core-core repulsion = 16498.163912 eV Total energy + Delta-G solvation = -2700.796549 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.72777 -37.81440 -36.62079 -34.11304 -32.85452 -31.94656 -29.15572 -27.77759 -26.43025 -25.29000 -23.79304 -22.34469 -21.00275 -19.50451 -18.24708 -18.03594 -17.19247 -16.50282 -16.13034 -15.58182 -15.18826 -14.88366 -14.78798 -14.74340 -14.23514 -13.72467 -13.39305 -13.28783 -13.20963 -12.89601 -12.67497 -12.61534 -12.47269 -12.27393 -11.97836 -11.88509 -11.66970 -11.51461 -11.43179 -11.08571 -10.93084 -10.80173 -10.61007 -10.42479 -8.81133 -8.01075 -6.24710 1.34661 1.36032 1.44748 2.38944 3.15211 3.38214 3.48109 3.92518 4.03710 4.21096 4.27893 4.48699 4.52473 4.59968 4.63649 4.69484 4.73324 4.77806 4.84337 4.87519 4.92432 5.03942 5.10931 5.15765 5.18323 5.30432 5.34278 5.40275 5.40911 5.48765 5.54483 5.62913 5.67174 5.80341 6.07894 6.24236 6.43802 6.77696 6.97807 7.01963 7.45722 8.92678 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020134 B = 0.008889 C = 0.008255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.345040 B = 3149.095834 C = 3391.028364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.104 4.104 3 C 0.220 3.780 4 H 0.001 0.999 5 C -0.547 4.547 6 H 0.048 0.952 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.944 3.056 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.272 1.272 13 N -0.533 5.533 14 C 0.060 3.940 15 C -0.102 4.102 16 C -0.077 4.077 17 H 0.095 0.905 18 C -0.152 4.152 19 C -0.079 4.079 20 H 0.069 0.931 21 C 0.085 3.915 22 O -0.593 6.593 23 C 0.084 3.916 24 H 0.043 0.957 25 H 0.052 0.948 26 H 0.035 0.965 27 H 0.061 0.939 28 H 0.025 0.975 29 H 0.261 0.739 30 H 0.047 0.953 31 H 0.018 0.982 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.032 0.968 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.046 0.954 39 H 0.393 0.607 40 H 0.015 0.985 41 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.291 5.319 13.834 14.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.142 4.142 3 C 0.113 3.887 4 H 0.019 0.981 5 C -0.586 4.586 6 H 0.066 0.934 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.771 3.229 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.197 1.197 13 N -0.257 5.257 14 C -0.069 4.069 15 C -0.140 4.140 16 C -0.095 4.095 17 H 0.114 0.886 18 C -0.209 4.209 19 C -0.098 4.098 20 H 0.087 0.913 21 C 0.007 3.993 22 O -0.401 6.401 23 C -0.044 4.044 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.054 0.946 27 H 0.080 0.920 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.036 0.964 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.051 0.949 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.064 0.936 39 H 0.242 0.758 40 H 0.034 0.966 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.110 5.330 13.147 14.524 hybrid contribution 2.350 -0.379 -0.371 2.409 sum -0.760 4.952 12.776 13.724 Atomic orbital electron populations 1.21529 0.96320 0.99490 1.00626 1.21422 0.94451 0.98427 0.99928 1.19029 0.91559 0.91242 0.86908 0.98078 1.21955 0.93984 1.36848 1.05804 0.93382 1.25621 1.01896 0.95038 0.95426 1.70006 1.36335 1.38532 1.10243 0.85770 0.81575 0.78359 0.77229 1.20337 1.20765 1.19708 1.62317 1.57804 1.02447 1.03083 1.21933 0.97667 0.89152 0.98122 1.21587 1.00292 0.99094 0.92994 1.21078 0.96230 0.93464 0.98729 0.88637 1.21980 0.95687 1.01904 1.01320 1.21218 1.00297 0.95101 0.93197 0.91295 1.22276 0.98136 0.81569 0.97336 1.86511 1.76806 1.23352 1.53457 1.21739 0.95300 0.97673 0.89689 0.93795 0.92843 0.94629 0.92045 0.95637 0.92988 0.93409 0.96371 0.91383 0.90048 0.94939 0.91464 0.91516 0.91137 0.93602 0.75799 0.96640 0.93462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.24 9.71 71.98 0.70 -4.54 16 2 C -0.10 -5.26 5.09 30.60 0.16 -5.10 16 3 C 0.22 11.45 1.73 44.17 0.08 11.52 16 4 H 0.00 0.08 8.01 -2.38 -0.02 0.06 16 5 C -0.55 -30.42 7.22 25.60 0.18 -30.24 16 6 H 0.05 2.69 5.84 -2.91 -0.02 2.67 16 7 C 0.02 1.11 5.30 84.65 0.45 1.56 16 8 N -0.91 -53.33 11.30 21.45 0.24 -53.08 16 9 Si 0.94 44.48 29.54 68.60 2.03 46.50 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 13 N -0.53 -23.29 4.07 -875.49 -3.56 -26.85 16 14 C 0.06 2.34 4.93 86.32 0.43 2.76 16 15 C -0.10 -2.93 5.60 30.64 0.17 -2.76 16 16 C -0.08 -1.98 2.77 -10.72 -0.03 -2.01 16 17 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 18 C -0.15 -3.95 8.21 71.98 0.59 -3.36 16 19 C -0.08 -2.44 2.37 -10.74 -0.03 -2.47 16 20 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 21 C 0.08 2.13 5.86 71.98 0.42 2.55 16 22 O -0.59 -16.25 13.22 -148.98 -1.97 -18.22 16 23 C 0.08 3.44 3.71 86.32 0.32 3.76 16 24 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 25 H 0.05 2.20 7.84 -2.39 -0.02 2.18 16 26 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.06 3.47 6.00 -2.39 -0.01 3.45 16 28 H 0.02 1.30 6.27 -2.39 -0.01 1.28 16 29 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 30 H 0.05 1.94 8.03 -2.38 -0.02 1.92 16 31 H 0.02 0.78 5.60 -2.39 -0.01 0.76 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.03 1.08 4.93 -2.38 -0.01 1.07 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.07 1.48 6.51 -2.38 -0.02 1.47 16 37 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.05 1.14 6.68 -2.39 -0.02 1.13 16 39 H 0.39 6.52 9.12 -74.06 -0.68 5.84 16 40 H 0.02 0.69 4.80 -2.39 -0.01 0.68 16 41 H 0.05 2.16 5.83 -2.39 -0.01 2.15 16 Total: -1.00 -64.38 300.83 0.51 -63.87 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.33 Total: 16.12 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: 3.44 Total: -28.33 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -3.32 Total: -79.94 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -1.97 Total: -18.22 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -64.38 0.51 -63.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700374328.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.223 kcal (2) G-P(sol) polarization free energy of solvation -64.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds