Wall clock time and date at job start Mon Mar 30 2020 04:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46859 * 2 1 4 4 H 1.08996 * 109.46859 * 179.44711 * 3 2 1 5 5 C 1.50701 * 109.47098 * 59.44697 * 3 2 1 6 6 H 1.08003 * 119.99835 * 239.99524 * 5 3 2 7 7 C 1.37879 * 120.00381 * 59.99882 * 5 3 2 8 8 N 1.31517 * 119.99368 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00313 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46805 * 59.99562 * 9 7 5 11 11 H 1.48489 * 109.46975 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46903 * 299.99830 * 9 7 5 13 13 N 1.46893 * 109.47100 * 299.44491 * 3 2 1 14 14 C 1.48529 * 111.00179 * 300.06782 * 13 3 2 15 15 C 1.55101 * 103.28618 * 200.33408 * 14 13 3 16 16 H 1.09004 * 110.71032 * 278.99352 * 15 14 13 17 17 C 1.53006 * 110.81213 * 155.66087 * 15 14 13 18 18 C 1.54590 * 102.84835 * 37.30616 * 15 14 13 19 19 C 1.53005 * 110.31006 * 97.11520 * 18 15 14 20 20 C 1.53001 * 110.31375 * 219.18770 * 18 15 14 21 21 O 1.42895 * 109.47063 * 178.60947 * 20 18 15 22 22 C 1.47909 * 111.00190 * 182.67181 * 13 3 2 23 23 H 1.09006 * 109.46666 * 184.52603 * 1 2 3 24 24 H 1.08996 * 109.46983 * 304.52733 * 1 2 3 25 25 H 1.08998 * 109.46633 * 64.52928 * 1 2 3 26 26 H 1.08999 * 109.46786 * 239.99864 * 2 1 3 27 27 H 1.08998 * 109.46735 * 120.00071 * 2 1 3 28 28 H 0.97006 * 119.99432 * 179.97438 * 8 7 5 29 29 H 1.08998 * 110.67112 * 318.71622 * 14 13 3 30 30 H 1.09004 * 110.66958 * 81.67845 * 14 13 3 31 31 H 1.08994 * 109.47463 * 306.54368 * 17 15 14 32 32 H 1.09003 * 109.46945 * 66.54064 * 17 15 14 33 33 H 1.08996 * 109.47118 * 186.53532 * 17 15 14 34 34 H 1.09002 * 109.47180 * 181.39472 * 19 18 15 35 35 H 1.09002 * 109.46792 * 301.39179 * 19 18 15 36 36 H 1.08997 * 109.47223 * 61.39298 * 19 18 15 37 37 H 1.09000 * 109.46843 * 58.60631 * 20 18 15 38 38 H 1.08997 * 109.46690 * 298.61124 * 20 18 15 39 39 H 0.96706 * 113.99495 * 179.97438 * 21 20 18 40 40 H 1.09001 * 109.91305 * 26.49278 * 22 13 3 41 41 H 1.08996 * 110.07778 * 265.29222 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0099 5 6 1.5265 2.1568 1.2236 6 1 0.9065 3.0346 1.1160 7 6 1.8481 1.6899 2.4804 8 7 2.6027 0.6207 2.6113 9 14 1.2121 2.5757 3.9970 10 1 -0.2728 2.5763 3.9835 11 1 1.6954 1.8792 5.2161 12 1 1.7077 3.9756 3.9967 13 7 1.5613 2.1311 -1.2060 14 6 2.0475 1.4527 -2.4347 15 6 1.9208 2.5512 -3.5222 16 1 0.8949 2.6182 -3.8847 17 6 2.8885 2.2867 -4.6774 18 6 2.3168 3.8366 -2.7603 19 6 3.7890 4.1700 -3.0106 20 6 1.4279 5.0049 -3.1914 21 8 1.7876 6.1746 -2.4536 22 6 2.0879 3.5116 -1.2725 23 1 -0.3633 -1.0245 0.0811 24 1 -0.3633 0.5825 0.8466 25 1 -0.3632 0.4419 -0.9278 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.8293 0.2924 3.4955 29 1 3.0869 1.1458 -2.3190 30 1 1.4190 0.5951 -2.6750 31 1 3.8983 2.1663 -4.2852 32 1 2.5909 1.3775 -5.1998 33 1 2.8657 3.1277 -5.3703 34 1 4.0599 5.0635 -2.4480 35 1 4.4106 3.3349 -2.6876 36 1 3.9452 4.3492 -4.0743 37 1 0.3842 4.7586 -2.9961 38 1 1.5641 5.1910 -4.2567 39 1 1.2637 6.9564 -2.6762 40 1 3.0306 3.5759 -0.7291 41 1 1.3659 4.2084 -0.8470 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703777116.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:56 Heat of formation + Delta-G solvation = -58.421075 kcal Electronic energy + Delta-G solvation = -19010.816780 eV Core-core repulsion = 16311.176626 eV Total energy + Delta-G solvation = -2699.640154 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.47300 -36.45919 -34.93006 -32.13196 -30.81501 -30.33887 -27.07167 -26.31988 -25.13260 -24.19247 -22.50252 -20.78997 -18.89864 -18.07377 -17.02517 -15.93653 -15.61029 -15.00952 -14.59457 -13.94869 -13.73015 -13.51591 -13.29511 -12.68034 -12.51844 -12.20415 -11.91683 -11.70912 -11.56713 -11.48509 -11.28864 -10.94310 -10.83428 -10.55756 -10.43955 -10.28926 -10.06091 -9.99702 -9.77168 -9.71432 -9.56375 -9.25734 -8.75610 -8.34733 -7.13888 -5.94049 -3.96681 3.36650 3.40429 3.44000 4.38137 4.46966 4.94744 4.97825 5.14111 5.33165 5.39588 5.46630 5.54488 5.66870 5.78524 5.82363 5.96952 6.00658 6.04206 6.21048 6.24308 6.40679 6.45310 6.52655 6.59833 6.62391 6.68458 6.80841 6.85975 6.96290 7.17915 7.32618 7.48121 7.69084 7.77970 7.81420 7.91089 8.20641 8.41353 8.64542 9.08610 9.66829 11.12615 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024598 B = 0.008104 C = 0.006830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.014302 B = 3454.350878 C = 4098.753454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.110 4.110 3 C 0.210 3.790 4 H -0.003 1.003 5 C -0.492 4.492 6 H 0.059 0.941 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.510 5.510 14 C 0.043 3.957 15 C -0.087 4.087 16 H 0.076 0.924 17 C -0.141 4.141 18 C -0.071 4.071 19 C -0.131 4.131 20 C 0.094 3.906 21 O -0.567 6.567 22 C 0.070 3.930 23 H 0.014 0.986 24 H 0.060 0.940 25 H 0.039 0.961 26 H 0.011 0.989 27 H 0.090 0.910 28 H 0.259 0.741 29 H 0.033 0.967 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.048 0.952 38 H 0.036 0.964 39 H 0.372 0.628 40 H 0.042 0.958 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.919 5.181 -12.583 13.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.148 4.148 3 C 0.103 3.897 4 H 0.015 0.985 5 C -0.531 4.531 6 H 0.078 0.922 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.721 3.279 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.234 5.234 14 C -0.086 4.086 15 C -0.106 4.106 16 H 0.095 0.905 17 C -0.199 4.199 18 C -0.072 4.072 19 C -0.188 4.188 20 C 0.017 3.983 21 O -0.372 6.372 22 C -0.058 4.058 23 H 0.033 0.967 24 H 0.079 0.921 25 H 0.058 0.942 26 H 0.030 0.970 27 H 0.108 0.892 28 H 0.069 0.931 29 H 0.051 0.949 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.217 0.783 40 H 0.060 0.940 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.966 4.629 -12.109 12.999 hybrid contribution 0.162 0.747 0.645 1.000 sum -0.804 5.375 -11.463 12.687 Atomic orbital electron populations 1.21466 0.97313 0.97506 1.01450 1.21529 0.95212 0.98171 0.99896 1.19442 0.92785 0.91067 0.86368 0.98534 1.20998 1.30793 1.11682 0.89627 0.92245 1.24897 0.95318 0.95124 0.98840 1.69877 1.37397 1.23065 1.23054 0.86644 0.79259 0.79742 0.82280 1.20294 1.21458 1.20394 1.64861 1.55320 1.01079 1.02144 1.23176 0.98019 0.96323 0.91046 1.22113 0.99200 0.94374 0.94913 0.90528 1.21841 0.99724 1.00716 0.97621 1.21542 0.95168 0.93059 0.97407 1.21837 0.94904 1.01442 1.00617 1.22196 0.97541 0.85335 0.93266 1.86543 1.63629 1.20389 1.66593 1.22601 0.99133 0.92145 0.91936 0.96673 0.92138 0.94221 0.96982 0.89174 0.93063 0.94876 0.91087 0.92306 0.92959 0.93033 0.92230 0.92887 0.93130 0.93404 0.94569 0.78276 0.93982 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 9.53 37.16 0.35 -2.36 16 2 C -0.11 -2.67 5.22 -26.73 -0.14 -2.81 16 3 C 0.21 5.33 1.44 -68.87 -0.10 5.23 16 4 H 0.00 -0.08 7.99 -51.93 -0.41 -0.50 16 5 C -0.49 -13.55 6.77 -34.44 -0.23 -13.79 16 6 H 0.06 1.67 7.42 -52.48 -0.39 1.28 16 7 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 8 N -0.89 -25.70 11.32 55.43 0.63 -25.08 16 9 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 N -0.51 -11.07 4.45 -223.78 -0.99 -12.06 16 14 C 0.04 0.79 4.86 -1.81 -0.01 0.78 16 15 C -0.09 -1.30 3.14 -88.67 -0.28 -1.58 16 16 H 0.08 1.10 7.86 -51.93 -0.41 0.70 16 17 C -0.14 -1.73 8.02 37.16 0.30 -1.43 16 18 C -0.07 -1.13 0.71 -153.15 -0.11 -1.24 16 19 C -0.13 -1.95 6.91 37.16 0.26 -1.69 16 20 C 0.09 1.30 5.64 37.16 0.21 1.51 16 21 O -0.57 -7.90 12.57 -35.23 -0.44 -8.35 16 22 C 0.07 1.44 4.94 -2.75 -0.01 1.42 16 23 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 24 H 0.06 1.49 7.04 -51.93 -0.37 1.12 16 25 H 0.04 0.85 7.76 -51.93 -0.40 0.44 16 26 H 0.01 0.26 6.90 -51.93 -0.36 -0.10 16 27 H 0.09 2.45 6.08 -51.93 -0.32 2.13 16 28 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.03 0.64 7.88 -51.93 -0.41 0.23 16 30 H 0.07 1.28 7.64 -51.93 -0.40 0.89 16 31 H 0.06 0.74 6.64 -51.93 -0.34 0.40 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.56 7.63 -51.93 -0.40 0.16 16 34 H 0.06 0.94 7.70 -51.93 -0.40 0.54 16 35 H 0.05 0.83 7.54 -51.93 -0.39 0.43 16 36 H 0.05 0.64 6.80 -51.93 -0.35 0.29 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.37 3.30 9.12 45.56 0.42 3.72 16 40 H 0.04 0.96 7.23 -51.93 -0.38 0.58 16 41 H 0.07 1.56 7.34 -51.93 -0.38 1.18 16 LS Contribution 309.12 15.07 4.66 4.66 Total: -1.00 -29.61 309.12 -7.54 -37.15 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.51 Total: 1.36 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 0.14 Total: -14.42 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: -0.37 Total: -37.14 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: -0.44 Total: -8.35 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.61 -7.54 -37.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703777116.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.271 kcal (2) G-P(sol) polarization free energy of solvation -29.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds