Wall clock time and date at job start Mon Mar 30 2020 04:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46859 * 2 1 4 4 H 1.08996 * 109.46859 * 179.44711 * 3 2 1 5 5 C 1.50701 * 109.47098 * 59.44697 * 3 2 1 6 6 H 1.08003 * 119.99835 * 239.99524 * 5 3 2 7 7 C 1.37879 * 120.00381 * 59.99882 * 5 3 2 8 8 N 1.31517 * 119.99368 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00313 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46805 * 59.99562 * 9 7 5 11 11 H 1.48489 * 109.46975 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46903 * 299.99830 * 9 7 5 13 13 N 1.46893 * 109.47100 * 299.44491 * 3 2 1 14 14 C 1.48529 * 111.00179 * 300.06782 * 13 3 2 15 15 C 1.55101 * 103.28618 * 200.33408 * 14 13 3 16 16 H 1.09004 * 110.71032 * 278.99352 * 15 14 13 17 17 C 1.53006 * 110.81213 * 155.66087 * 15 14 13 18 18 C 1.54590 * 102.84835 * 37.30616 * 15 14 13 19 19 C 1.53005 * 110.31006 * 97.11520 * 18 15 14 20 20 C 1.53001 * 110.31375 * 219.18770 * 18 15 14 21 21 O 1.42895 * 109.47063 * 178.60947 * 20 18 15 22 22 C 1.47909 * 111.00190 * 182.67181 * 13 3 2 23 23 H 1.09006 * 109.46666 * 184.52603 * 1 2 3 24 24 H 1.08996 * 109.46983 * 304.52733 * 1 2 3 25 25 H 1.08998 * 109.46633 * 64.52928 * 1 2 3 26 26 H 1.08999 * 109.46786 * 239.99864 * 2 1 3 27 27 H 1.08998 * 109.46735 * 120.00071 * 2 1 3 28 28 H 0.97006 * 119.99432 * 179.97438 * 8 7 5 29 29 H 1.08998 * 110.67112 * 318.71622 * 14 13 3 30 30 H 1.09004 * 110.66958 * 81.67845 * 14 13 3 31 31 H 1.08994 * 109.47463 * 306.54368 * 17 15 14 32 32 H 1.09003 * 109.46945 * 66.54064 * 17 15 14 33 33 H 1.08996 * 109.47118 * 186.53532 * 17 15 14 34 34 H 1.09002 * 109.47180 * 181.39472 * 19 18 15 35 35 H 1.09002 * 109.46792 * 301.39179 * 19 18 15 36 36 H 1.08997 * 109.47223 * 61.39298 * 19 18 15 37 37 H 1.09000 * 109.46843 * 58.60631 * 20 18 15 38 38 H 1.08997 * 109.46690 * 298.61124 * 20 18 15 39 39 H 0.96706 * 113.99495 * 179.97438 * 21 20 18 40 40 H 1.09001 * 109.91305 * 26.49278 * 22 13 3 41 41 H 1.08996 * 110.07778 * 265.29222 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0099 5 6 1.5265 2.1568 1.2236 6 1 0.9065 3.0346 1.1160 7 6 1.8481 1.6899 2.4804 8 7 2.6027 0.6207 2.6113 9 14 1.2121 2.5757 3.9970 10 1 -0.2728 2.5763 3.9835 11 1 1.6954 1.8792 5.2161 12 1 1.7077 3.9756 3.9967 13 7 1.5613 2.1311 -1.2060 14 6 2.0475 1.4527 -2.4347 15 6 1.9208 2.5512 -3.5222 16 1 0.8949 2.6182 -3.8847 17 6 2.8885 2.2867 -4.6774 18 6 2.3168 3.8366 -2.7603 19 6 3.7890 4.1700 -3.0106 20 6 1.4279 5.0049 -3.1914 21 8 1.7876 6.1746 -2.4536 22 6 2.0879 3.5116 -1.2725 23 1 -0.3633 -1.0245 0.0811 24 1 -0.3633 0.5825 0.8466 25 1 -0.3632 0.4419 -0.9278 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.8293 0.2924 3.4955 29 1 3.0869 1.1458 -2.3190 30 1 1.4190 0.5951 -2.6750 31 1 3.8983 2.1663 -4.2852 32 1 2.5909 1.3775 -5.1998 33 1 2.8657 3.1277 -5.3703 34 1 4.0599 5.0635 -2.4480 35 1 4.4106 3.3349 -2.6876 36 1 3.9452 4.3492 -4.0743 37 1 0.3842 4.7586 -2.9961 38 1 1.5641 5.1910 -4.2567 39 1 1.2637 6.9564 -2.6762 40 1 3.0306 3.5759 -0.7291 41 1 1.3659 4.2084 -0.8470 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703777116.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:56 Heat of formation + Delta-G solvation = -79.372046 kcal Electronic energy + Delta-G solvation = -19011.725282 eV Core-core repulsion = 16311.176626 eV Total energy + Delta-G solvation = -2700.548656 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.89991 -37.84059 -36.47605 -34.04254 -32.49048 -31.75907 -28.79500 -27.66280 -26.62411 -25.92416 -24.20013 -22.26251 -20.80995 -19.39590 -18.14392 -17.98914 -17.12849 -16.71784 -16.00817 -15.45137 -15.28983 -15.24105 -14.58369 -14.24104 -14.12361 -13.71478 -13.45888 -13.27885 -13.03550 -12.95260 -12.80590 -12.62282 -12.45296 -12.40222 -12.19397 -11.80529 -11.61389 -11.50337 -11.30891 -11.24242 -11.12850 -10.81764 -10.71735 -10.48696 -8.97570 -8.09657 -6.19288 1.39071 1.40448 1.48035 2.41574 3.17696 3.30652 3.50515 3.69647 3.80464 4.16756 4.31105 4.36340 4.53883 4.56548 4.60507 4.66757 4.72480 4.77137 4.79986 4.85128 4.87096 4.93243 5.03836 5.08986 5.14944 5.23844 5.28282 5.34221 5.37188 5.46436 5.48802 5.59585 5.72454 5.76123 5.86265 6.28454 6.38981 6.69643 6.92490 7.02476 7.48001 8.95861 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024598 B = 0.008104 C = 0.006830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.014302 B = 3454.350878 C = 4098.753454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.105 4.105 3 C 0.218 3.782 4 H -0.049 1.049 5 C -0.503 4.503 6 H 0.048 0.952 7 C 0.013 3.987 8 N -0.919 5.919 9 Si 0.951 3.049 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.277 1.277 13 N -0.514 5.514 14 C 0.038 3.962 15 C -0.075 4.075 16 H 0.091 0.909 17 C -0.137 4.137 18 C -0.070 4.070 19 C -0.124 4.124 20 C 0.099 3.901 21 O -0.590 6.590 22 C 0.074 3.926 23 H 0.037 0.963 24 H 0.034 0.966 25 H 0.051 0.949 26 H 0.028 0.972 27 H 0.060 0.940 28 H 0.260 0.740 29 H 0.019 0.981 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.045 0.955 35 H 0.036 0.964 36 H 0.082 0.918 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.393 0.607 40 H 0.004 0.996 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.958 5.875 -14.714 15.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.143 4.143 3 C 0.110 3.890 4 H -0.031 1.031 5 C -0.542 4.542 6 H 0.066 0.934 7 C -0.185 4.185 8 N -0.559 5.559 9 Si 0.777 3.223 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.202 1.202 13 N -0.238 5.238 14 C -0.090 4.090 15 C -0.094 4.094 16 H 0.110 0.890 17 C -0.194 4.194 18 C -0.070 4.070 19 C -0.181 4.181 20 C 0.021 3.979 21 O -0.398 6.398 22 C -0.055 4.055 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.046 0.954 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.037 0.963 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.101 0.899 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.243 0.757 40 H 0.022 0.978 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.020 5.340 -14.259 15.360 hybrid contribution 0.511 0.544 1.305 1.503 sum -1.509 5.884 -12.954 14.307 Atomic orbital electron populations 1.21314 0.95583 0.98603 1.00917 1.21397 0.96604 0.97149 0.99174 1.19199 0.89960 0.92128 0.87672 1.03124 1.21170 1.30609 1.11462 0.90926 0.93406 1.25621 0.95531 0.95822 1.01537 1.70009 1.38220 1.24132 1.23580 0.85715 0.78958 0.78592 0.79034 1.19537 1.20771 1.20212 1.64757 1.55232 1.01722 1.02115 1.23288 0.97124 0.97764 0.90805 1.22093 1.00979 0.91800 0.94499 0.89027 1.21815 0.98307 1.02549 0.96726 1.21555 0.96589 0.95025 0.93880 1.21777 0.93871 1.00119 1.02352 1.22137 0.96513 0.84363 0.94891 1.86494 1.64558 1.21468 1.67274 1.22520 0.96409 0.91207 0.95334 0.94366 0.94639 0.92962 0.95361 0.92151 0.93063 0.96299 0.90392 0.93083 0.91498 0.90511 0.93576 0.94494 0.89894 0.93604 0.91093 0.75726 0.97762 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.78 9.53 71.98 0.69 -4.09 16 2 C -0.10 -5.21 5.22 30.60 0.16 -5.05 16 3 C 0.22 11.53 1.44 44.17 0.06 11.60 16 4 H -0.05 -2.95 7.99 -2.39 -0.02 -2.97 16 5 C -0.50 -28.74 6.77 25.60 0.17 -28.56 16 6 H 0.05 2.78 7.42 -2.91 -0.02 2.76 16 7 C 0.01 0.76 5.30 84.65 0.45 1.21 16 8 N -0.92 -54.49 11.32 21.45 0.24 -54.24 16 9 Si 0.95 45.42 29.54 68.60 2.03 47.44 16 10 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 13 N -0.51 -22.78 4.45 -861.91 -3.83 -26.61 16 14 C 0.04 1.38 4.86 86.71 0.42 1.81 16 15 C -0.07 -2.04 3.14 -9.53 -0.03 -2.07 16 16 H 0.09 2.28 7.86 -2.39 -0.02 2.27 16 17 C -0.14 -2.83 8.02 71.98 0.58 -2.25 16 18 C -0.07 -2.13 0.71 -51.30 -0.04 -2.16 16 19 C -0.12 -3.54 6.91 71.98 0.50 -3.04 16 20 C 0.10 2.43 5.64 71.98 0.41 2.84 16 21 O -0.59 -15.39 12.57 -148.98 -1.87 -17.26 16 22 C 0.07 3.11 4.94 86.45 0.43 3.54 16 23 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 24 H 0.03 1.74 7.04 -2.39 -0.02 1.72 16 25 H 0.05 2.17 7.76 -2.39 -0.02 2.15 16 26 H 0.03 1.27 6.90 -2.39 -0.02 1.25 16 27 H 0.06 3.37 6.08 -2.39 -0.01 3.36 16 28 H 0.26 14.72 8.31 -92.70 -0.77 13.95 16 29 H 0.02 0.73 7.88 -2.39 -0.02 0.71 16 30 H 0.08 2.69 7.64 -2.38 -0.02 2.68 16 31 H 0.05 1.15 6.64 -2.39 -0.02 1.14 16 32 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.25 7.63 -2.39 -0.02 1.23 16 34 H 0.05 1.43 7.70 -2.39 -0.02 1.41 16 35 H 0.04 1.15 7.54 -2.39 -0.02 1.13 16 36 H 0.08 1.83 6.80 -2.39 -0.02 1.81 16 37 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.39 6.09 9.12 -74.05 -0.68 5.41 16 40 H 0.00 0.19 7.23 -2.39 -0.02 0.17 16 41 H 0.05 2.38 7.34 -2.39 -0.02 2.36 16 Total: -1.00 -66.53 309.12 0.67 -65.85 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.31 Total: 11.07 kcal Atomic # 6 Polarization: -30.04 SS G_CDS: 3.79 Total: -26.25 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -3.59 Total: -80.85 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -1.87 Total: -17.26 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -66.53 0.67 -65.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703777116.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.518 kcal (2) G-P(sol) polarization free energy of solvation -66.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds