Wall clock time and date at job start Mon Mar 30 2020 04:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53008 * 109.47109 * 2 1 4 4 H 1.09000 * 109.47151 * 181.98467 * 3 2 1 5 5 C 1.50704 * 109.46968 * 61.98631 * 3 2 1 6 6 H 1.08002 * 119.99447 * 245.08304 * 5 3 2 7 7 C 1.37875 * 120.00355 * 65.08178 * 5 3 2 8 8 N 1.31505 * 120.00173 * 195.95600 * 7 5 3 9 9 Si 1.86801 * 119.99815 * 15.95565 * 7 5 3 10 10 H 1.48503 * 109.47236 * 94.61259 * 9 7 5 11 11 H 1.48497 * 109.47201 * 214.61383 * 9 7 5 12 12 H 1.48504 * 109.47051 * 334.61086 * 9 7 5 13 13 N 1.46899 * 109.47040 * 301.98200 * 3 2 1 14 14 C 1.47898 * 110.99729 * 79.14644 * 13 3 2 15 15 C 1.53995 * 107.22751 * 214.25263 * 14 13 3 16 16 H 1.08995 * 110.31142 * 120.04066 * 15 14 13 17 17 C 1.52995 * 110.30873 * 242.21170 * 15 14 13 18 18 C 1.54604 * 105.13569 * 1.12610 * 15 14 13 19 19 C 1.52997 * 110.72405 * 263.42231 * 18 15 14 20 20 C 1.53001 * 110.72275 * 140.31614 * 18 15 14 21 21 O 1.42900 * 109.46929 * 180.02562 * 20 18 15 22 22 C 1.48799 * 111.18576 * 321.80890 * 13 3 2 23 23 H 1.09000 * 109.47380 * 307.00628 * 1 2 3 24 24 H 1.09006 * 109.47230 * 67.00813 * 1 2 3 25 25 H 1.09000 * 109.47278 * 187.00655 * 1 2 3 26 26 H 1.09001 * 109.47258 * 240.00285 * 2 1 3 27 27 H 1.09002 * 109.47320 * 119.99780 * 2 1 3 28 28 H 0.97001 * 120.00149 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.91961 * 94.79953 * 14 13 3 30 30 H 1.09000 * 109.92133 * 333.70414 * 14 13 3 31 31 H 1.08994 * 109.47529 * 58.54506 * 17 15 14 32 32 H 1.09009 * 109.46970 * 178.54018 * 17 15 14 33 33 H 1.08996 * 109.47286 * 298.54013 * 17 15 14 34 34 H 1.09000 * 109.47100 * 59.99817 * 19 18 15 35 35 H 1.08996 * 109.47317 * 180.02562 * 19 18 15 36 36 H 1.09010 * 109.47029 * 300.00129 * 19 18 15 37 37 H 1.08998 * 109.47094 * 300.00271 * 20 18 15 38 38 H 1.09000 * 109.47275 * 59.99799 * 20 18 15 39 39 H 0.96698 * 113.99721 * 179.97438 * 21 20 18 40 40 H 1.09002 * 110.52499 * 41.06877 * 22 13 3 41 41 H 1.09002 * 110.84258 * 278.08880 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1293 1.4428 -0.0356 5 6 1.5782 2.1386 1.2544 6 1 0.8887 2.9673 1.1894 7 6 2.0359 1.7175 2.4849 8 7 1.4159 2.0950 3.5815 9 14 3.5367 0.6106 2.5943 10 1 4.7486 1.4402 2.8140 11 1 3.3724 -0.3355 3.7270 12 1 3.6820 -0.1528 1.3288 13 7 1.5115 2.1487 -1.1748 14 6 0.1115 2.5711 -0.9538 15 6 -0.6132 2.4751 -2.3093 16 1 -1.4479 1.7774 -2.2434 17 6 -1.1067 3.8557 -2.7464 18 6 0.4506 1.9473 -3.2992 19 6 1.0965 3.1025 -4.0667 20 6 -0.1654 0.9345 -4.2666 21 8 0.8393 0.4644 -5.1675 22 6 1.4799 1.2596 -2.3675 23 1 -0.3634 0.6185 0.8206 24 1 -0.3634 0.4014 -0.9461 25 1 -0.3634 -1.0200 0.1254 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.7382 1.7990 4.4472 29 1 0.0864 3.5987 -0.5913 30 1 -0.3659 1.9105 -0.2300 31 1 -0.2599 4.5380 -2.8194 32 1 -1.5941 3.7764 -3.7183 33 1 -1.8179 4.2363 -2.0133 34 1 1.5769 3.7825 -3.3632 35 1 1.8414 2.7082 -4.7578 36 1 0.3308 3.6401 -4.6262 37 1 -0.5701 0.0937 -3.7033 38 1 -0.9658 1.4122 -4.8316 39 1 0.5191 -0.1827 -5.8107 40 1 1.1415 0.2610 -2.0909 41 1 2.4595 1.2142 -2.8435 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703777120.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:03 Heat of formation + Delta-G solvation = -29.186865 kcal Electronic energy + Delta-G solvation = -19389.138042 eV Core-core repulsion = 16690.765579 eV Total energy + Delta-G solvation = -2698.372463 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.95719 -36.84047 -35.04722 -32.15553 -30.62571 -30.41482 -27.83488 -26.50876 -25.76960 -23.92913 -22.64372 -20.58175 -19.12690 -18.34715 -17.17549 -16.13621 -15.76334 -14.98107 -14.55636 -14.44537 -14.05345 -13.43605 -13.24950 -12.86136 -12.75685 -12.44432 -12.17382 -11.90861 -11.45261 -11.35119 -11.21333 -11.05972 -10.88422 -10.57265 -10.55327 -10.33317 -10.13599 -10.05101 -9.92378 -9.67823 -9.55713 -9.40691 -9.06471 -8.33709 -7.13710 -6.08884 -4.01442 3.29945 3.39446 3.43199 4.27436 4.44466 4.91856 5.00218 5.10445 5.22025 5.31257 5.48522 5.51964 5.63996 5.73227 5.82258 5.96020 6.04085 6.05029 6.10492 6.18871 6.23710 6.29689 6.39210 6.42953 6.53819 6.58151 6.65351 6.74471 6.80195 6.86525 7.02422 7.07101 7.22112 7.31918 7.56889 7.67193 8.00084 8.20521 8.65461 9.00217 9.57893 11.03291 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.032430 B = 0.008002 C = 0.007328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.187222 B = 3498.447604 C = 3819.987902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.152 4.152 3 C 0.176 3.824 4 H 0.036 0.964 5 C -0.512 4.512 6 H 0.083 0.917 7 C 0.077 3.923 8 N -0.892 5.892 9 Si 0.862 3.138 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.256 1.256 13 N -0.500 5.500 14 C 0.034 3.966 15 C -0.098 4.098 16 H 0.065 0.935 17 C -0.139 4.139 18 C -0.060 4.060 19 C -0.124 4.124 20 C 0.090 3.910 21 O -0.567 6.567 22 C 0.036 3.964 23 H 0.079 0.921 24 H 0.050 0.950 25 H 0.027 0.973 26 H 0.037 0.963 27 H 0.055 0.945 28 H 0.263 0.737 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.046 0.954 37 H 0.042 0.958 38 H 0.041 0.959 39 H 0.371 0.629 40 H 0.055 0.945 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.554 -2.565 -14.360 15.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.191 4.191 3 C 0.067 3.933 4 H 0.054 0.946 5 C -0.550 4.550 6 H 0.101 0.899 7 C -0.125 4.125 8 N -0.530 5.530 9 Si 0.689 3.311 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.181 1.181 13 N -0.223 5.223 14 C -0.093 4.093 15 C -0.117 4.117 16 H 0.083 0.917 17 C -0.196 4.196 18 C -0.060 4.060 19 C -0.181 4.181 20 C 0.012 3.988 21 O -0.372 6.372 22 C -0.092 4.092 23 H 0.098 0.902 24 H 0.069 0.931 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.217 0.783 40 H 0.073 0.927 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.835 -1.696 -13.860 14.480 hybrid contribution -0.042 -1.804 0.161 1.811 sum -3.876 -3.500 -13.699 14.661 Atomic orbital electron populations 1.22086 0.96928 0.99538 1.02060 1.22473 0.96169 1.01096 0.99342 1.19835 0.95368 0.88599 0.89465 0.94575 1.21013 1.28363 1.17441 0.88194 0.89945 1.24855 0.96357 0.95602 0.95679 1.69963 1.38691 1.46300 0.98010 0.87202 0.84687 0.81140 0.78084 1.20685 1.21586 1.18062 1.64984 1.18282 1.35235 1.03813 1.23255 0.89404 1.02188 0.94458 1.22111 0.96828 0.96808 0.95994 0.91687 1.21878 1.01010 0.96849 0.99894 1.21493 0.95930 0.94865 0.93758 1.21671 0.99841 0.97190 0.99371 1.22244 0.89650 0.96014 0.90876 1.86531 1.38387 1.63491 1.48757 1.23468 0.98316 0.95831 0.91603 0.90208 0.93134 0.95437 0.94472 0.92692 0.92767 0.91466 0.89961 0.91726 0.93621 0.92956 0.91479 0.92791 0.93493 0.94011 0.94119 0.78293 0.92732 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 7.81 37.15 0.29 -2.68 16 2 C -0.15 -3.29 4.45 -26.73 -0.12 -3.41 16 3 C 0.18 4.15 2.32 -68.86 -0.16 3.99 16 4 H 0.04 0.91 6.70 -51.93 -0.35 0.56 16 5 C -0.51 -13.87 7.04 -34.44 -0.24 -14.11 16 6 H 0.08 2.41 6.37 -52.49 -0.33 2.07 16 7 C 0.08 2.18 5.34 -17.82 -0.10 2.08 16 8 N -0.89 -26.57 13.96 55.43 0.77 -25.80 16 9 Si 0.86 21.26 25.82 -169.99 -4.39 16.87 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.26 -6.02 5.51 56.52 0.31 -5.71 16 13 N -0.50 -10.46 5.39 -223.65 -1.20 -11.66 16 14 C 0.03 0.67 3.93 -2.76 -0.01 0.66 16 15 C -0.10 -1.51 2.51 -89.26 -0.22 -1.73 16 16 H 0.06 0.94 7.49 -51.93 -0.39 0.55 16 17 C -0.14 -1.86 7.76 37.16 0.29 -1.57 16 18 C -0.06 -0.90 0.68 -152.64 -0.10 -1.01 16 19 C -0.12 -1.81 7.16 37.16 0.27 -1.54 16 20 C 0.09 1.14 5.87 37.16 0.22 1.36 16 21 O -0.57 -7.04 12.74 -35.23 -0.45 -7.49 16 22 C 0.04 0.65 4.40 -1.75 -0.01 0.64 16 23 H 0.08 1.79 6.08 -51.93 -0.32 1.48 16 24 H 0.05 0.91 3.91 -51.93 -0.20 0.71 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.04 0.75 6.19 -51.93 -0.32 0.42 16 27 H 0.05 1.26 5.06 -51.93 -0.26 1.00 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.07 1.39 7.20 -51.93 -0.37 1.02 16 30 H 0.08 1.72 3.39 -51.93 -0.18 1.55 16 31 H 0.06 0.90 6.51 -51.93 -0.34 0.56 16 32 H 0.04 0.53 7.80 -51.92 -0.41 0.12 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 1.08 7.59 -51.93 -0.39 0.68 16 35 H 0.05 0.80 7.59 -51.93 -0.39 0.41 16 36 H 0.05 0.60 6.76 -51.92 -0.35 0.25 16 37 H 0.04 0.52 8.10 -51.93 -0.42 0.10 16 38 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.37 2.78 9.12 45.56 0.42 3.20 16 40 H 0.05 1.00 4.08 -51.93 -0.21 0.79 16 41 H 0.07 1.29 8.06 -51.93 -0.42 0.88 16 LS Contribution 287.63 15.07 4.33 4.33 Total: -1.00 -29.75 287.63 -6.57 -36.32 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -5.74 Total: 4.74 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 0.10 Total: -17.32 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: -0.43 Total: -37.46 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.45 Total: -7.49 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.39 Total: 16.87 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.75 -6.57 -36.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703777120.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.131 kcal (2) G-P(sol) polarization free energy of solvation -29.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds