Wall clock time and date at job start Mon Mar 30 2020 04:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53008 * 109.47109 * 2 1 4 4 H 1.09000 * 109.47151 * 181.98467 * 3 2 1 5 5 C 1.50704 * 109.46968 * 61.98631 * 3 2 1 6 6 H 1.08002 * 119.99447 * 245.08304 * 5 3 2 7 7 C 1.37875 * 120.00355 * 65.08178 * 5 3 2 8 8 N 1.31505 * 120.00173 * 195.95600 * 7 5 3 9 9 Si 1.86801 * 119.99815 * 15.95565 * 7 5 3 10 10 H 1.48503 * 109.47236 * 94.61259 * 9 7 5 11 11 H 1.48497 * 109.47201 * 214.61383 * 9 7 5 12 12 H 1.48504 * 109.47051 * 334.61086 * 9 7 5 13 13 N 1.46899 * 109.47040 * 301.98200 * 3 2 1 14 14 C 1.47898 * 110.99729 * 79.14644 * 13 3 2 15 15 C 1.53995 * 107.22751 * 214.25263 * 14 13 3 16 16 H 1.08995 * 110.31142 * 120.04066 * 15 14 13 17 17 C 1.52995 * 110.30873 * 242.21170 * 15 14 13 18 18 C 1.54604 * 105.13569 * 1.12610 * 15 14 13 19 19 C 1.52997 * 110.72405 * 263.42231 * 18 15 14 20 20 C 1.53001 * 110.72275 * 140.31614 * 18 15 14 21 21 O 1.42900 * 109.46929 * 180.02562 * 20 18 15 22 22 C 1.48799 * 111.18576 * 321.80890 * 13 3 2 23 23 H 1.09000 * 109.47380 * 307.00628 * 1 2 3 24 24 H 1.09006 * 109.47230 * 67.00813 * 1 2 3 25 25 H 1.09000 * 109.47278 * 187.00655 * 1 2 3 26 26 H 1.09001 * 109.47258 * 240.00285 * 2 1 3 27 27 H 1.09002 * 109.47320 * 119.99780 * 2 1 3 28 28 H 0.97001 * 120.00149 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.91961 * 94.79953 * 14 13 3 30 30 H 1.09000 * 109.92133 * 333.70414 * 14 13 3 31 31 H 1.08994 * 109.47529 * 58.54506 * 17 15 14 32 32 H 1.09009 * 109.46970 * 178.54018 * 17 15 14 33 33 H 1.08996 * 109.47286 * 298.54013 * 17 15 14 34 34 H 1.09000 * 109.47100 * 59.99817 * 19 18 15 35 35 H 1.08996 * 109.47317 * 180.02562 * 19 18 15 36 36 H 1.09010 * 109.47029 * 300.00129 * 19 18 15 37 37 H 1.08998 * 109.47094 * 300.00271 * 20 18 15 38 38 H 1.09000 * 109.47275 * 59.99799 * 20 18 15 39 39 H 0.96698 * 113.99721 * 179.97438 * 21 20 18 40 40 H 1.09002 * 110.52499 * 41.06877 * 22 13 3 41 41 H 1.09002 * 110.84258 * 278.08880 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1293 1.4428 -0.0356 5 6 1.5782 2.1386 1.2544 6 1 0.8887 2.9673 1.1894 7 6 2.0359 1.7175 2.4849 8 7 1.4159 2.0950 3.5815 9 14 3.5367 0.6106 2.5943 10 1 4.7486 1.4402 2.8140 11 1 3.3724 -0.3355 3.7270 12 1 3.6820 -0.1528 1.3288 13 7 1.5115 2.1487 -1.1748 14 6 0.1115 2.5711 -0.9538 15 6 -0.6132 2.4751 -2.3093 16 1 -1.4479 1.7774 -2.2434 17 6 -1.1067 3.8557 -2.7464 18 6 0.4506 1.9473 -3.2992 19 6 1.0965 3.1025 -4.0667 20 6 -0.1654 0.9345 -4.2666 21 8 0.8393 0.4644 -5.1675 22 6 1.4799 1.2596 -2.3675 23 1 -0.3634 0.6185 0.8206 24 1 -0.3634 0.4014 -0.9461 25 1 -0.3634 -1.0200 0.1254 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.7382 1.7990 4.4472 29 1 0.0864 3.5987 -0.5913 30 1 -0.3659 1.9105 -0.2300 31 1 -0.2599 4.5380 -2.8194 32 1 -1.5941 3.7764 -3.7183 33 1 -1.8179 4.2363 -2.0133 34 1 1.5769 3.7825 -3.3632 35 1 1.8414 2.7082 -4.7578 36 1 0.3308 3.6401 -4.6262 37 1 -0.5701 0.0937 -3.7033 38 1 -0.9658 1.4122 -4.8316 39 1 0.5191 -0.1827 -5.8107 40 1 1.1415 0.2610 -2.0909 41 1 2.4595 1.2142 -2.8435 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703777120.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:03 Heat of formation + Delta-G solvation = -52.455075 kcal Electronic energy + Delta-G solvation = -19390.147028 eV Core-core repulsion = 16690.765579 eV Total energy + Delta-G solvation = -2699.381448 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.39919 -38.05696 -36.36948 -34.20925 -32.03341 -31.86411 -29.59004 -27.72686 -27.19991 -25.50099 -24.21591 -22.05068 -20.92461 -19.64820 -18.36434 -17.87352 -17.34921 -16.39692 -16.11351 -15.78263 -15.58905 -15.01339 -14.63519 -14.54899 -14.14889 -13.98720 -13.43800 -13.33999 -13.04929 -12.80953 -12.76128 -12.48016 -12.39842 -12.33586 -12.16911 -11.96965 -11.59109 -11.35083 -11.21837 -11.17295 -11.08687 -11.04973 -10.71772 -10.47367 -8.80039 -8.27245 -6.22626 1.31202 1.37137 1.45241 2.36079 3.07230 3.27594 3.53366 3.77620 3.84725 4.13766 4.28110 4.31568 4.41246 4.44988 4.51414 4.53805 4.64867 4.66386 4.77762 4.87678 4.93801 4.94871 5.03951 5.09244 5.12901 5.15926 5.25871 5.29902 5.36483 5.38912 5.44581 5.53967 5.56398 5.63175 5.69089 6.10355 6.42191 6.70742 6.81908 7.02919 7.39657 8.88060 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.032430 B = 0.008002 C = 0.007328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.187222 B = 3498.447604 C = 3819.987902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.149 4.149 3 C 0.177 3.823 4 H 0.022 0.978 5 C -0.505 4.505 6 H 0.047 0.953 7 C 0.025 3.975 8 N -0.938 5.938 9 Si 0.919 3.081 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.236 1.236 13 N -0.516 5.516 14 C 0.037 3.963 15 C -0.090 4.090 16 H 0.082 0.918 17 C -0.136 4.136 18 C -0.057 4.057 19 C -0.117 4.117 20 C 0.095 3.905 21 O -0.585 6.585 22 C 0.037 3.963 23 H 0.045 0.955 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.041 0.959 28 H 0.263 0.737 29 H 0.040 0.960 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.051 0.949 34 H 0.043 0.957 35 H 0.050 0.950 36 H 0.068 0.932 37 H 0.048 0.952 38 H 0.065 0.935 39 H 0.394 0.606 40 H 0.057 0.943 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.066 -4.026 -17.062 18.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.188 4.188 3 C 0.068 3.932 4 H 0.040 0.960 5 C -0.543 4.543 6 H 0.065 0.935 7 C -0.173 4.173 8 N -0.578 5.578 9 Si 0.744 3.256 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.160 1.160 13 N -0.239 5.239 14 C -0.091 4.091 15 C -0.109 4.109 16 H 0.100 0.900 17 C -0.193 4.193 18 C -0.057 4.057 19 C -0.174 4.174 20 C 0.017 3.983 21 O -0.393 6.393 22 C -0.091 4.091 23 H 0.064 0.936 24 H 0.087 0.913 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.243 0.757 40 H 0.074 0.926 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.350 -3.171 -16.602 17.453 hybrid contribution 0.092 -1.270 0.958 1.594 sum -4.258 -4.442 -15.644 16.810 Atomic orbital electron populations 1.21954 0.95579 1.00378 1.01699 1.22385 0.97387 0.99375 0.99696 1.19663 0.94588 0.89842 0.89076 0.96032 1.21171 1.26934 1.16238 0.89915 0.93461 1.25573 0.98908 0.97498 0.95357 1.70085 1.40501 1.48583 0.98609 0.86269 0.80877 0.79569 0.78854 1.20837 1.21338 1.15956 1.64857 1.19321 1.35965 1.03750 1.23152 0.89058 1.00042 0.96841 1.22051 0.96890 0.98600 0.93389 0.89985 1.21845 1.00794 0.95252 1.01386 1.21488 0.94820 0.95579 0.93833 1.21603 1.00269 0.96742 0.98828 1.22127 0.89765 0.95579 0.90791 1.86472 1.38922 1.64483 1.49393 1.23492 0.99091 0.95649 0.90871 0.93577 0.91331 0.93099 0.92216 0.94049 0.92769 0.94141 0.91753 0.92739 0.90728 0.92943 0.93776 0.93059 0.91278 0.93413 0.91652 0.75681 0.92555 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.37 7.81 71.98 0.56 -4.81 16 2 C -0.15 -6.29 4.45 30.59 0.14 -6.16 16 3 C 0.18 8.41 2.32 44.17 0.10 8.52 16 4 H 0.02 1.09 6.70 -2.39 -0.02 1.07 16 5 C -0.50 -28.26 7.04 25.60 0.18 -28.08 16 6 H 0.05 2.93 6.37 -2.91 -0.02 2.91 16 7 C 0.02 1.43 5.34 84.66 0.45 1.88 16 8 N -0.94 -57.86 13.96 21.44 0.30 -57.56 16 9 Si 0.92 44.39 25.82 68.60 1.77 46.16 16 10 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 11 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 12 H -0.24 -10.56 5.51 99.48 0.55 -10.01 16 13 N -0.52 -21.60 5.39 -861.48 -4.64 -26.24 16 14 C 0.04 1.44 3.93 86.45 0.34 1.78 16 15 C -0.09 -2.57 2.51 -9.91 -0.02 -2.60 16 16 H 0.08 2.09 7.49 -2.39 -0.02 2.08 16 17 C -0.14 -3.31 7.76 71.98 0.56 -2.76 16 18 C -0.06 -1.55 0.68 -50.97 -0.03 -1.59 16 19 C -0.12 -3.16 7.16 71.98 0.52 -2.64 16 20 C 0.10 2.00 5.87 71.98 0.42 2.42 16 21 O -0.58 -12.17 12.74 -148.98 -1.90 -14.07 16 22 C 0.04 1.26 4.40 86.60 0.38 1.64 16 23 H 0.05 2.09 6.08 -2.39 -0.01 2.08 16 24 H 0.07 2.35 3.91 -2.38 -0.01 2.34 16 25 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.06 2.25 6.19 -2.39 -0.01 2.24 16 27 H 0.04 1.84 5.06 -2.39 -0.01 1.83 16 28 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 29 H 0.04 1.76 7.20 -2.39 -0.02 1.74 16 30 H 0.06 2.75 3.39 -2.39 -0.01 2.74 16 31 H 0.05 1.44 6.51 -2.39 -0.02 1.43 16 32 H 0.07 1.42 7.80 -2.38 -0.02 1.40 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.04 1.37 7.59 -2.39 -0.02 1.36 16 35 H 0.05 1.40 7.59 -2.39 -0.02 1.39 16 36 H 0.07 1.54 6.76 -2.38 -0.02 1.53 16 37 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 38 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.39 4.23 9.12 -74.06 -0.68 3.56 16 40 H 0.06 1.92 4.08 -2.39 -0.01 1.91 16 41 H 0.06 2.20 8.06 -2.39 -0.02 2.18 16 Total: -1.00 -66.02 287.63 -0.68 -66.70 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 0.19 Total: 17.40 kcal Atomic # 6 Polarization: -35.98 SS G_CDS: 3.59 Total: -32.39 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -4.34 Total: -83.80 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -1.90 Total: -14.07 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.77 Total: 46.16 kcal Total: -66.02 -0.68 -66.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703777120.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.244 kcal (2) G-P(sol) polarization free energy of solvation -66.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds