Wall clock time and date at job start Mon Mar 30 2020 05:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 115.56347 * 2 1 4 4 C 1.53002 * 117.49958 * 214.31620 * 2 1 3 5 5 C 1.52998 * 117.50154 * 145.68983 * 2 1 3 6 6 C 1.52991 * 117.52173 * 214.97113 * 5 2 1 7 7 C 1.53004 * 117.49413 * 0.02562 * 5 2 1 8 8 N 1.46902 * 109.46837 * 180.02562 * 7 5 2 9 9 C 1.46897 * 111.00275 * 293.95466 * 8 7 5 10 10 C 1.46905 * 111.00011 * 170.00250 * 8 7 5 11 11 C 1.52997 * 109.47150 * 190.00236 * 10 8 7 12 12 O 1.42898 * 109.47319 * 64.99949 * 11 10 8 13 13 C 1.42902 * 114.00186 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47205 * 179.97438 * 13 12 11 15 15 H 1.08008 * 120.00105 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00129 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99722 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00218 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46964 * 89.99643 * 18 16 14 20 20 H 1.48499 * 109.47045 * 209.99599 * 18 16 14 21 21 H 1.48495 * 109.46904 * 329.99888 * 18 16 14 22 22 H 1.08993 * 109.47323 * 274.31161 * 1 2 3 23 23 H 1.09002 * 109.47098 * 34.31328 * 1 2 3 24 24 H 1.08997 * 109.46583 * 154.30490 * 1 2 3 25 25 H 1.08998 * 117.50220 * 145.02110 * 4 2 1 26 26 H 1.09003 * 117.51784 * 359.97438 * 4 2 1 27 27 H 1.08999 * 109.47114 * 180.11239 * 6 5 2 28 28 H 1.08996 * 109.47220 * 300.12186 * 6 5 2 29 29 H 1.09005 * 109.46770 * 60.11761 * 6 5 2 30 30 H 1.09000 * 109.47005 * 60.01302 * 7 5 2 31 31 H 1.08992 * 109.47234 * 300.01519 * 7 5 2 32 32 H 1.08999 * 109.47085 * 296.04836 * 9 8 7 33 33 H 1.09006 * 109.47338 * 56.04452 * 9 8 7 34 34 H 1.08998 * 109.47507 * 176.04779 * 9 8 7 35 35 H 1.09001 * 109.47063 * 69.99633 * 10 8 7 36 36 H 1.09004 * 109.46681 * 310.00258 * 10 8 7 37 37 H 1.09002 * 109.47153 * 304.99641 * 11 10 8 38 38 H 1.09001 * 109.46832 * 184.99832 * 11 10 8 39 39 H 1.09001 * 109.46918 * 299.99649 * 13 12 11 40 40 H 1.08999 * 109.46857 * 59.99535 * 13 12 11 41 41 H 0.96998 * 119.99585 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2365 -1.1209 -0.7651 5 6 2.2365 -1.1210 0.7650 6 6 3.5491 -0.7765 1.4714 7 6 1.3588 -2.1565 1.4709 8 7 2.2125 -3.1436 2.1454 9 6 2.9725 -3.9364 1.1698 10 6 1.4190 -4.0119 3.0255 11 6 2.3575 -4.8535 3.8925 12 8 3.0924 -3.9970 4.7691 13 6 4.0037 -4.6869 5.6268 14 6 4.7209 -3.6917 6.5022 15 1 4.5029 -2.6377 6.4122 16 6 5.6560 -4.1266 7.4172 17 7 5.9218 -5.4100 7.5263 18 14 6.5456 -2.8930 8.5018 19 1 5.7766 -2.6919 9.7562 20 1 7.8999 -3.4073 8.8284 21 1 6.6674 -1.5994 7.7830 22 1 -0.3633 0.0773 1.0247 23 1 -0.3633 0.8488 -0.5793 24 1 -0.3632 -0.9260 -0.4456 25 1 3.1716 -0.8751 -1.2684 26 1 1.6116 -1.8588 -1.2682 27 1 3.9376 -1.6647 1.9696 28 1 4.2748 -0.4244 0.7382 29 1 3.3701 0.0052 2.2097 30 1 0.7301 -2.6607 0.7370 31 1 0.7290 -1.6575 2.2073 32 1 2.2829 -4.5178 0.5579 33 1 3.5510 -3.2691 0.5310 34 1 3.6477 -4.6107 1.6967 35 1 0.7953 -4.6700 2.4204 36 1 0.7852 -3.3983 3.6658 37 1 3.0506 -5.4000 3.2530 38 1 1.7723 -5.5600 4.4812 39 1 3.4530 -5.3902 6.2515 40 1 4.7309 -5.2296 5.0229 41 1 6.5795 -5.7160 8.1703 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704054259.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:39 Heat of formation + Delta-G solvation = -26.986192 kcal Electronic energy + Delta-G solvation = -17792.110977 eV Core-core repulsion = 15093.833943 eV Total energy + Delta-G solvation = -2698.277035 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.26330 -37.17441 -35.55760 -32.63506 -30.32881 -29.06293 -27.52491 -26.93586 -26.72332 -23.89771 -22.21633 -21.16788 -20.58878 -18.41388 -16.32560 -16.01971 -15.69713 -15.23987 -14.88638 -14.55659 -14.05932 -13.96303 -13.50711 -13.16355 -12.95182 -12.78645 -12.28669 -12.06283 -11.84075 -11.78843 -11.63651 -11.43781 -11.36601 -11.11748 -10.91966 -10.77678 -10.64682 -10.35964 -9.96550 -9.73530 -9.41497 -9.01519 -8.72583 -8.07729 -7.97573 -6.04518 -4.05148 3.34703 3.39435 3.45620 3.65709 4.11225 4.41042 4.63252 4.77864 4.84388 4.98907 5.17671 5.21820 5.32067 5.39579 5.50773 5.56763 5.62666 5.66757 5.68636 5.74909 5.82288 5.89111 5.90487 6.01807 6.06807 6.12757 6.16924 6.22688 6.26437 6.32102 6.38300 6.77460 7.18009 7.33246 7.34392 7.51305 7.87679 8.24358 8.70044 9.10072 9.59593 11.07264 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029536 B = 0.004759 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.774343 B = 5881.809084 C = 6382.112740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.152 4.152 3 H 0.102 0.898 4 C -0.178 4.178 5 C -0.107 4.107 6 C -0.114 4.114 7 C 0.095 3.905 8 N -0.522 5.522 9 C 0.023 3.977 10 C 0.061 3.939 11 C 0.067 3.933 12 O -0.379 6.379 13 C 0.194 3.806 14 C -0.509 4.509 15 H 0.067 0.933 16 C 0.055 3.945 17 N -0.901 5.901 18 Si 0.906 3.094 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.271 1.271 22 H 0.060 0.940 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.043 0.957 29 H 0.055 0.945 30 H 0.028 0.972 31 H 0.076 0.924 32 H 0.016 0.984 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.036 0.964 36 H 0.079 0.921 37 H 0.036 0.964 38 H 0.037 0.963 39 H 0.001 0.999 40 H 0.003 0.997 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.576 6.195 -15.656 19.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.171 4.171 3 H 0.120 0.880 4 C -0.215 4.215 5 C -0.108 4.108 6 C -0.171 4.171 7 C -0.033 4.033 8 N -0.245 5.245 9 C -0.125 4.125 10 C -0.067 4.067 11 C -0.011 4.011 12 O -0.298 6.298 13 C 0.119 3.881 14 C -0.547 4.547 15 H 0.085 0.915 16 C -0.146 4.146 17 N -0.541 5.541 18 Si 0.734 3.266 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.196 1.196 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.109 0.891 26 H 0.106 0.894 27 H 0.109 0.891 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.094 0.906 32 H 0.034 0.966 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.054 0.946 36 H 0.098 0.902 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.019 0.981 40 H 0.020 0.980 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.146 6.515 -15.248 18.937 hybrid contribution -0.008 -0.289 0.035 0.291 sum -9.153 6.227 -15.213 18.815 Atomic orbital electron populations 1.21329 0.93216 1.01491 1.01811 1.22439 0.95010 0.94530 1.05121 0.88020 1.23309 1.02277 1.01458 0.94469 1.21559 0.98631 0.98413 0.92154 1.21327 0.93197 1.03277 0.99292 1.21553 0.93118 0.92323 0.96269 1.61805 1.26612 1.16172 1.19921 1.22454 0.97999 0.97374 0.94663 1.22146 0.94724 0.95177 0.94621 1.22249 0.94007 0.92535 0.92353 1.87947 1.56370 1.33661 1.51870 1.20168 0.86922 0.93056 0.87909 1.21070 1.20961 0.94300 1.18365 0.91521 1.24942 0.96783 0.95548 0.97288 1.69971 1.34226 1.13569 1.36307 0.86360 0.78661 0.81165 0.80454 1.20544 1.21166 1.19596 0.92116 0.92510 0.92799 0.89106 0.89387 0.89129 0.93801 0.92618 0.95377 0.90595 0.96594 0.91174 0.90993 0.94581 0.90246 0.94554 0.94464 0.98095 0.97967 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 9.21 37.16 0.34 -0.74 16 2 C -0.15 -1.56 6.13 -90.62 -0.56 -2.12 16 3 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.18 -1.84 9.32 -26.73 -0.25 -2.09 16 5 C -0.11 -1.29 1.56 -154.51 -0.24 -1.53 16 6 C -0.11 -1.56 9.27 37.15 0.34 -1.21 16 7 C 0.10 1.22 4.12 -3.82 -0.02 1.21 16 8 N -0.52 -7.97 3.47 -242.91 -0.84 -8.81 16 9 C 0.02 0.32 8.60 60.06 0.52 0.84 16 10 C 0.06 0.94 5.34 -3.82 -0.02 0.92 16 11 C 0.07 1.27 5.99 37.16 0.22 1.49 16 12 O -0.38 -9.38 10.27 -35.23 -0.36 -9.74 16 13 C 0.19 5.45 5.69 36.00 0.20 5.65 16 14 C -0.51 -15.29 9.43 -34.44 -0.32 -15.62 16 15 H 0.07 2.00 7.81 -52.48 -0.41 1.59 16 16 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.40 13.29 55.43 0.74 -26.67 16 18 Si 0.91 22.22 29.54 -169.99 -5.02 17.20 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 H 0.06 0.55 8.02 -51.93 -0.42 0.13 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.46 7.77 -51.93 -0.40 0.06 16 25 H 0.09 0.89 8.05 -51.93 -0.42 0.48 16 26 H 0.09 0.86 7.96 -51.93 -0.41 0.45 16 27 H 0.09 1.48 6.06 -51.93 -0.31 1.16 16 28 H 0.04 0.53 7.90 -51.93 -0.41 0.12 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.03 0.33 7.75 -51.93 -0.40 -0.07 16 31 H 0.08 0.99 7.80 -51.93 -0.41 0.58 16 32 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.07 0.92 6.41 -51.93 -0.33 0.59 16 34 H 0.07 1.10 6.37 -51.93 -0.33 0.77 16 35 H 0.04 0.47 8.12 -51.93 -0.42 0.05 16 36 H 0.08 1.23 7.93 -51.93 -0.41 0.82 16 37 H 0.04 0.68 6.34 -51.93 -0.33 0.35 16 38 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 40 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 327.62 15.07 4.94 4.94 Total: -1.00 -31.25 327.62 -7.94 -39.19 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -7.51 Total: -4.43 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 0.13 Total: -11.68 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: -0.11 Total: -35.48 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -0.36 Total: -9.74 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.25 -7.94 -39.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704054259.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.204 kcal (2) G-P(sol) polarization free energy of solvation -31.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds