Wall clock time and date at job start Mon Mar 30 2020 04:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46519 * 2 1 4 4 H 1.09002 * 109.46977 * 302.40391 * 3 2 1 5 5 C 1.50700 * 109.46538 * 182.41435 * 3 2 1 6 6 H 1.08008 * 119.99918 * 239.99808 * 5 3 2 7 7 C 1.37874 * 120.00572 * 59.99461 * 5 3 2 8 8 N 1.31516 * 119.99673 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00479 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46646 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46947 * 120.00150 * 9 7 5 12 12 H 1.48496 * 109.47318 * 240.00615 * 9 7 5 13 13 N 1.46891 * 109.47704 * 62.41388 * 3 2 1 14 14 C 1.46846 * 111.00406 * 189.68943 * 13 3 2 15 15 C 1.53034 * 109.52485 * 174.15925 * 14 13 3 16 16 C 1.53114 * 109.28226 * 59.17781 * 15 14 13 17 17 C 1.53119 * 109.21146 * 302.31556 * 16 15 14 18 18 H 1.08998 * 109.50501 * 297.73980 * 17 16 15 19 19 C 1.53001 * 109.50213 * 177.62669 * 17 16 15 20 20 H 1.09007 * 109.47056 * 299.99411 * 19 17 16 21 21 C 1.52992 * 109.47403 * 60.00020 * 19 17 16 22 22 O 1.42902 * 109.46779 * 180.02562 * 19 17 16 23 23 C 1.46852 * 111.00300 * 65.47447 * 13 3 2 24 24 H 1.09003 * 109.47215 * 294.66414 * 1 2 3 25 25 H 1.08999 * 109.47375 * 54.66468 * 1 2 3 26 26 H 1.09004 * 109.47093 * 174.66539 * 1 2 3 27 27 H 1.08993 * 109.47346 * 239.99988 * 2 1 3 28 28 H 1.08999 * 109.47067 * 119.99185 * 2 1 3 29 29 H 0.97001 * 119.99927 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.45981 * 54.14133 * 14 13 3 31 31 H 1.09002 * 109.45205 * 294.16858 * 14 13 3 32 32 H 1.09001 * 109.50159 * 299.23396 * 15 14 13 33 33 H 1.09006 * 109.50185 * 179.11923 * 15 14 13 34 34 H 1.09001 * 109.52130 * 62.24561 * 16 15 14 35 35 H 1.08994 * 109.52635 * 182.37945 * 16 15 14 36 36 H 1.08997 * 109.47458 * 59.99782 * 21 19 17 37 37 H 1.09000 * 109.47119 * 179.97438 * 21 19 17 38 38 H 1.09001 * 109.47007 * 299.99884 * 21 19 17 39 39 H 0.96702 * 114.00259 * 299.99012 * 22 19 17 40 40 H 1.08995 * 109.46131 * 305.86180 * 23 13 3 41 41 H 1.09002 * 109.45962 * 65.82596 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6417 1.9687 -0.8677 5 6 3.5457 1.4430 -0.0599 6 1 4.1176 1.8995 0.7346 7 6 4.1934 0.8607 -1.1286 8 7 3.4971 0.3053 -2.0962 9 14 6.0600 0.8619 -1.2032 10 1 6.6028 1.5450 -0.0015 11 1 6.5546 -0.5377 -1.2422 12 1 6.5062 1.5789 -2.4246 13 7 1.5985 2.1181 1.2274 14 6 1.8687 3.5599 1.1610 15 6 1.2673 4.2500 2.3874 16 6 1.8838 3.6542 3.6560 17 6 1.6300 2.1443 3.6783 18 1 0.5569 1.9562 3.7109 19 6 2.2943 1.5329 4.9135 20 1 3.3676 1.7200 4.8790 21 6 1.7062 2.1672 6.1755 22 8 2.0574 0.1238 4.9333 23 6 2.2209 1.5152 2.4130 24 1 -0.3634 0.4289 0.9339 25 1 -0.3634 0.5943 -0.8383 26 1 -0.3633 -1.0233 -0.0955 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8901 29 1 3.9527 -0.1041 -2.8484 30 1 1.4213 3.9720 0.2565 31 1 2.9457 3.7269 1.1421 32 1 0.1885 4.0950 2.3996 33 1 1.4817 5.3180 2.3456 34 1 2.9573 3.8431 3.6627 35 1 1.4276 4.1132 4.5330 36 1 0.6330 1.9800 6.2100 37 1 2.1792 1.7312 7.0555 38 1 1.8873 3.2419 6.1601 39 1 1.1215 -0.1174 4.9640 40 1 2.0294 0.4422 2.4177 41 1 3.2963 1.6918 2.3880 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708330168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:54 Heat of formation + Delta-G solvation = -70.773647 kcal Electronic energy + Delta-G solvation = -18985.331243 eV Core-core repulsion = 16285.155442 eV Total energy + Delta-G solvation = -2700.175801 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.07593 -36.86827 -34.55677 -32.10913 -31.40961 -30.16928 -28.88030 -26.44164 -23.97252 -23.17178 -22.39764 -20.83864 -19.53204 -18.87343 -16.34639 -16.28041 -15.47996 -14.92837 -14.45084 -14.09936 -13.86442 -13.34411 -13.16230 -12.91922 -12.72261 -12.46021 -12.10120 -11.76488 -11.69214 -11.34274 -11.13582 -11.02692 -10.84918 -10.63374 -10.46428 -10.39443 -10.20462 -9.99581 -9.89794 -9.59742 -9.37287 -9.16530 -8.97736 -8.32643 -7.03985 -5.94995 -4.07876 3.27740 3.36318 3.39741 4.42623 4.53838 4.81093 5.13366 5.22751 5.27597 5.30802 5.42658 5.46448 5.58744 5.85994 5.93824 5.98133 6.08769 6.17648 6.24137 6.29072 6.37912 6.39954 6.50319 6.52903 6.64512 6.71146 6.79631 6.90257 6.98758 7.16998 7.24919 7.42522 7.66914 7.81698 7.85954 8.04995 8.21994 8.39734 8.54669 9.02843 9.59516 11.04118 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021811 B = 0.007908 C = 0.007570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.475255 B = 3539.799015 C = 3698.083439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.111 4.111 3 C 0.214 3.786 4 H 0.036 0.964 5 C -0.540 4.540 6 H 0.056 0.944 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.534 5.534 14 C 0.062 3.938 15 C -0.115 4.115 16 C -0.111 4.111 17 C -0.116 4.116 18 H 0.072 0.928 19 C 0.106 3.894 20 H 0.093 0.907 21 C -0.183 4.183 22 O -0.561 6.561 23 C 0.074 3.926 24 H 0.045 0.955 25 H 0.038 0.962 26 H 0.024 0.976 27 H 0.090 0.910 28 H 0.034 0.966 29 H 0.260 0.740 30 H 0.061 0.939 31 H 0.033 0.967 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.371 0.629 40 H 0.075 0.925 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.977 4.245 11.390 13.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.149 4.149 3 C 0.108 3.892 4 H 0.054 0.946 5 C -0.579 4.579 6 H 0.074 0.926 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.713 3.287 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.258 5.258 14 C -0.067 4.067 15 C -0.153 4.153 16 C -0.149 4.149 17 C -0.136 4.136 18 H 0.090 0.910 19 C 0.047 3.953 20 H 0.111 0.889 21 C -0.241 4.241 22 O -0.365 6.365 23 C -0.054 4.054 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.043 0.957 27 H 0.109 0.891 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.218 0.782 40 H 0.093 0.907 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -4.808 4.075 11.217 12.867 hybrid contribution 1.406 0.192 -0.224 1.436 sum -3.403 4.267 10.993 12.274 Atomic orbital electron populations 1.21682 0.98923 0.98219 1.00427 1.21591 0.92110 0.99196 1.01990 1.19262 0.92600 0.91003 0.86326 0.94605 1.21788 0.92805 1.37059 1.06230 0.92588 1.24906 0.97859 0.95117 0.95577 1.69888 1.34812 1.37881 1.09914 0.86646 0.86432 0.77740 0.77832 1.19998 1.20987 1.21080 1.62363 1.57874 1.01536 1.04058 1.21839 0.98351 0.90152 0.96332 1.21592 1.00453 0.98163 0.95052 1.21584 1.00533 0.95104 0.97657 1.21981 1.00555 0.95310 0.95720 0.91005 1.21932 1.00150 0.80438 0.92783 0.88895 1.22539 1.01227 1.01715 0.98619 1.86597 1.30269 1.22699 1.96978 1.21836 0.96402 0.98954 0.88217 0.93613 0.94308 0.95709 0.89144 0.94728 0.93016 0.92092 0.94910 0.91963 0.92718 0.92517 0.92634 0.92547 0.92407 0.91495 0.78246 0.90684 0.94734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.71 37.16 0.36 -2.41 16 2 C -0.11 -2.65 5.09 -26.73 -0.14 -2.78 16 3 C 0.21 5.30 1.73 -68.87 -0.12 5.18 16 4 H 0.04 0.99 7.99 -51.93 -0.42 0.57 16 5 C -0.54 -14.56 7.23 -34.44 -0.25 -14.81 16 6 H 0.06 1.54 5.84 -52.48 -0.31 1.23 16 7 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 8 N -0.89 -25.15 11.30 55.43 0.63 -24.53 16 9 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 N -0.53 -11.18 4.05 -228.00 -0.92 -12.10 16 14 C 0.06 1.19 5.18 -3.84 -0.02 1.17 16 15 C -0.11 -1.74 6.09 -26.65 -0.16 -1.90 16 16 C -0.11 -1.56 4.85 -26.61 -0.13 -1.69 16 17 C -0.12 -1.75 2.13 -90.47 -0.19 -1.95 16 18 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 19 C 0.11 1.44 3.17 -26.73 -0.08 1.36 16 20 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 21 C -0.18 -1.95 9.18 37.15 0.34 -1.61 16 22 O -0.56 -8.16 12.70 -35.23 -0.45 -8.61 16 23 C 0.07 1.46 3.92 -3.76 -0.01 1.44 16 24 H 0.04 0.89 7.84 -51.93 -0.41 0.48 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.09 2.43 6.01 -51.93 -0.31 2.11 16 28 H 0.03 0.83 6.31 -51.93 -0.33 0.50 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.06 1.19 8.02 -51.93 -0.42 0.78 16 31 H 0.03 0.69 7.27 -51.93 -0.38 0.31 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.66 6.57 -51.93 -0.34 0.31 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.66 6.49 -51.93 -0.34 0.33 16 39 H 0.37 4.09 9.05 45.56 0.41 4.51 16 40 H 0.07 1.58 5.74 -51.93 -0.30 1.28 16 41 H 0.03 0.76 6.39 -51.93 -0.33 0.43 16 LS Contribution 307.60 15.07 4.64 4.64 Total: -1.00 -28.47 307.60 -8.03 -36.50 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -6.40 Total: 3.89 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -0.50 Total: -16.22 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: -0.30 Total: -36.63 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -0.45 Total: -8.61 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.47 -8.03 -36.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708330168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.276 kcal (2) G-P(sol) polarization free energy of solvation -28.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds