Wall clock time and date at job start Mon Mar 30 2020 04:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46519 * 2 1 4 4 H 1.09002 * 109.46977 * 302.40391 * 3 2 1 5 5 C 1.50700 * 109.46538 * 182.41435 * 3 2 1 6 6 H 1.08008 * 119.99918 * 239.99808 * 5 3 2 7 7 C 1.37874 * 120.00572 * 59.99461 * 5 3 2 8 8 N 1.31516 * 119.99673 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00479 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46646 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46947 * 120.00150 * 9 7 5 12 12 H 1.48496 * 109.47318 * 240.00615 * 9 7 5 13 13 N 1.46891 * 109.47704 * 62.41388 * 3 2 1 14 14 C 1.46846 * 111.00406 * 189.68943 * 13 3 2 15 15 C 1.53034 * 109.52485 * 174.15925 * 14 13 3 16 16 C 1.53114 * 109.28226 * 59.17781 * 15 14 13 17 17 C 1.53119 * 109.21146 * 302.31556 * 16 15 14 18 18 H 1.08998 * 109.50501 * 297.73980 * 17 16 15 19 19 C 1.53001 * 109.50213 * 177.62669 * 17 16 15 20 20 H 1.09007 * 109.47056 * 299.99411 * 19 17 16 21 21 C 1.52992 * 109.47403 * 60.00020 * 19 17 16 22 22 O 1.42902 * 109.46779 * 180.02562 * 19 17 16 23 23 C 1.46852 * 111.00300 * 65.47447 * 13 3 2 24 24 H 1.09003 * 109.47215 * 294.66414 * 1 2 3 25 25 H 1.08999 * 109.47375 * 54.66468 * 1 2 3 26 26 H 1.09004 * 109.47093 * 174.66539 * 1 2 3 27 27 H 1.08993 * 109.47346 * 239.99988 * 2 1 3 28 28 H 1.08999 * 109.47067 * 119.99185 * 2 1 3 29 29 H 0.97001 * 119.99927 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.45981 * 54.14133 * 14 13 3 31 31 H 1.09002 * 109.45205 * 294.16858 * 14 13 3 32 32 H 1.09001 * 109.50159 * 299.23396 * 15 14 13 33 33 H 1.09006 * 109.50185 * 179.11923 * 15 14 13 34 34 H 1.09001 * 109.52130 * 62.24561 * 16 15 14 35 35 H 1.08994 * 109.52635 * 182.37945 * 16 15 14 36 36 H 1.08997 * 109.47458 * 59.99782 * 21 19 17 37 37 H 1.09000 * 109.47119 * 179.97438 * 21 19 17 38 38 H 1.09001 * 109.47007 * 299.99884 * 21 19 17 39 39 H 0.96702 * 114.00259 * 299.99012 * 22 19 17 40 40 H 1.08995 * 109.46131 * 305.86180 * 23 13 3 41 41 H 1.09002 * 109.45962 * 65.82596 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6417 1.9687 -0.8677 5 6 3.5457 1.4430 -0.0599 6 1 4.1176 1.8995 0.7346 7 6 4.1934 0.8607 -1.1286 8 7 3.4971 0.3053 -2.0962 9 14 6.0600 0.8619 -1.2032 10 1 6.6028 1.5450 -0.0015 11 1 6.5546 -0.5377 -1.2422 12 1 6.5062 1.5789 -2.4246 13 7 1.5985 2.1181 1.2274 14 6 1.8687 3.5599 1.1610 15 6 1.2673 4.2500 2.3874 16 6 1.8838 3.6542 3.6560 17 6 1.6300 2.1443 3.6783 18 1 0.5569 1.9562 3.7109 19 6 2.2943 1.5329 4.9135 20 1 3.3676 1.7200 4.8790 21 6 1.7062 2.1672 6.1755 22 8 2.0574 0.1238 4.9333 23 6 2.2209 1.5152 2.4130 24 1 -0.3634 0.4289 0.9339 25 1 -0.3634 0.5943 -0.8383 26 1 -0.3633 -1.0233 -0.0955 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8901 29 1 3.9527 -0.1041 -2.8484 30 1 1.4213 3.9720 0.2565 31 1 2.9457 3.7269 1.1421 32 1 0.1885 4.0950 2.3996 33 1 1.4817 5.3180 2.3456 34 1 2.9573 3.8431 3.6627 35 1 1.4276 4.1132 4.5330 36 1 0.6330 1.9800 6.2100 37 1 2.1792 1.7312 7.0555 38 1 1.8873 3.2419 6.1601 39 1 1.1215 -0.1174 4.9640 40 1 2.0294 0.4422 2.4177 41 1 3.2963 1.6918 2.3880 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708330168.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:54 Heat of formation + Delta-G solvation = -90.150619 kcal Electronic energy + Delta-G solvation = -18986.171492 eV Core-core repulsion = 16285.155442 eV Total energy + Delta-G solvation = -2701.016050 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.49051 -38.24679 -36.15655 -33.95597 -32.93541 -31.69580 -30.06710 -28.36718 -25.63465 -24.54913 -24.03333 -22.12367 -21.05068 -20.64185 -18.30076 -17.63452 -16.90840 -16.45512 -16.01038 -15.62690 -15.07753 -15.04734 -14.76571 -14.48689 -14.22099 -13.82114 -13.41672 -13.30806 -13.05361 -13.01020 -12.75295 -12.69064 -12.47786 -12.22972 -12.09924 -11.83850 -11.66097 -11.55880 -11.49048 -11.38147 -11.01110 -10.79581 -10.53617 -10.41575 -8.89499 -8.04433 -6.27206 1.31745 1.34616 1.44195 2.37185 3.12637 3.33277 3.60155 3.90631 4.04388 4.09522 4.24674 4.41753 4.48160 4.56750 4.62431 4.71125 4.75718 4.79983 4.89906 4.94882 5.03094 5.03684 5.07996 5.15324 5.17618 5.22355 5.34447 5.38212 5.42317 5.47894 5.51632 5.58999 5.65991 5.80015 6.07617 6.21857 6.40651 6.73723 6.94488 6.96006 7.43409 8.89991 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021811 B = 0.007908 C = 0.007570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.475255 B = 3539.799015 C = 3698.083439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.104 4.104 3 C 0.219 3.781 4 H 0.002 0.998 5 C -0.549 4.549 6 H 0.044 0.956 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.944 3.056 10 H -0.275 1.275 11 H -0.279 1.279 12 H -0.278 1.278 13 N -0.528 5.528 14 C 0.059 3.941 15 C -0.105 4.105 16 C -0.108 4.108 17 C -0.105 4.105 18 H 0.084 0.916 19 C 0.108 3.892 20 H 0.076 0.924 21 C -0.173 4.173 22 O -0.582 6.582 23 C 0.081 3.919 24 H 0.058 0.942 25 H 0.033 0.967 26 H 0.044 0.956 27 H 0.059 0.941 28 H 0.027 0.973 29 H 0.261 0.739 30 H 0.051 0.949 31 H 0.006 0.994 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.093 0.907 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.386 0.614 40 H 0.056 0.944 41 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.874 5.127 13.468 15.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.143 4.143 3 C 0.112 3.888 4 H 0.019 0.981 5 C -0.588 4.588 6 H 0.062 0.938 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.770 3.230 10 H -0.200 1.200 11 H -0.205 1.205 12 H -0.204 1.204 13 N -0.251 5.251 14 C -0.070 4.070 15 C -0.143 4.143 16 C -0.146 4.146 17 C -0.124 4.124 18 H 0.102 0.898 19 C 0.049 3.951 20 H 0.094 0.906 21 C -0.230 4.230 22 O -0.389 6.389 23 C -0.047 4.047 24 H 0.077 0.923 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.046 0.954 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.025 0.975 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.235 0.765 40 H 0.074 0.926 41 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -5.719 4.963 13.308 15.311 hybrid contribution 1.688 -0.093 -0.897 1.914 sum -4.031 4.871 12.410 13.928 Atomic orbital electron populations 1.21530 0.95964 0.99567 1.00840 1.21414 0.94694 0.98115 1.00036 1.19044 0.91299 0.91489 0.87017 0.98054 1.22000 0.94221 1.36723 1.05872 0.93759 1.25601 1.01875 0.95016 0.95422 1.70005 1.36251 1.38440 1.10319 0.85732 0.81673 0.77798 0.77801 1.20002 1.20522 1.20387 1.62350 1.57317 1.02382 1.03038 1.21940 0.97070 0.89393 0.98594 1.21545 1.00663 0.98999 0.93087 1.21603 1.00329 0.94128 0.98507 1.21904 1.00838 0.96001 0.93696 0.89814 1.21899 0.99370 0.80246 0.93612 0.90602 1.22433 1.01927 1.02068 0.96609 1.86562 1.31911 1.23390 1.97051 1.21781 0.94655 0.98331 0.89940 0.92333 0.94805 0.93694 0.92232 0.95393 0.92920 0.93089 0.97542 0.90898 0.90374 0.93393 0.88857 0.91021 0.91937 0.90251 0.76512 0.92567 0.98114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.93 9.71 71.98 0.70 -4.23 16 2 C -0.10 -5.12 5.09 30.60 0.16 -4.97 16 3 C 0.22 11.24 1.73 44.17 0.08 11.31 16 4 H 0.00 0.09 7.99 -2.39 -0.02 0.07 16 5 C -0.55 -30.80 7.23 25.60 0.18 -30.61 16 6 H 0.04 2.54 5.84 -2.91 -0.02 2.52 16 7 C 0.02 1.16 5.30 84.65 0.45 1.61 16 8 N -0.91 -53.23 11.30 21.45 0.24 -52.99 16 9 Si 0.94 45.02 29.54 68.60 2.03 47.05 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 13 N -0.53 -22.38 4.05 -875.25 -3.54 -25.92 16 14 C 0.06 2.28 5.18 86.33 0.45 2.72 16 15 C -0.11 -2.92 6.09 30.64 0.19 -2.74 16 16 C -0.11 -2.71 4.85 30.67 0.15 -2.57 16 17 C -0.11 -2.97 2.13 -10.70 -0.02 -2.99 16 18 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 19 C 0.11 2.73 3.17 30.59 0.10 2.82 16 20 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 21 C -0.17 -3.03 9.18 71.98 0.66 -2.37 16 22 O -0.58 -16.15 12.70 -148.98 -1.89 -18.04 16 23 C 0.08 3.22 3.92 86.37 0.34 3.56 16 24 H 0.06 2.20 7.84 -2.39 -0.02 2.18 16 25 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 27 H 0.06 3.31 6.01 -2.39 -0.01 3.29 16 28 H 0.03 1.37 6.31 -2.39 -0.02 1.36 16 29 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 30 H 0.05 2.03 8.02 -2.39 -0.02 2.01 16 31 H 0.01 0.27 7.27 -2.39 -0.02 0.26 16 32 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.09 1.73 6.57 -2.39 -0.02 1.71 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.21 6.49 -2.39 -0.02 1.19 16 39 H 0.39 7.75 9.05 -74.06 -0.67 7.08 16 40 H 0.06 2.41 5.74 -2.39 -0.01 2.40 16 41 H 0.00 0.03 6.39 -2.39 -0.02 0.01 16 Total: -1.00 -63.58 307.60 0.58 -63.00 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.32 Total: 15.34 kcal Atomic # 6 Polarization: -31.86 SS G_CDS: 3.42 Total: -28.44 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -3.30 Total: -78.91 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -1.89 Total: -18.04 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -63.58 0.58 -63.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708330168.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.152 kcal (2) G-P(sol) polarization free energy of solvation -63.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds